Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1946.0 1034 100.0
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1353.6 1039 71.4
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1323.5 1061 68.6
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1307.0 1034 69.0
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1290.0 1037 67.9
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1285.8 1038 66.6
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1273.5 1035 67.3
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1261.5 1034 66.6
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1255.0 1040 66.8
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1251.9 1036 66.2
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1250.3 1039 66.3
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1250.3 1034 64.9
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1250.0 1034 64.9
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1248.4 1044 64.8
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1247.3 1039 65.4
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1246.1 1034 65.3
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1243.0 1036 65.7
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1241.9 1050 67.0
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1241.5 1034 65.5
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1237.6 1034 64.5
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1236.9 1038 66.0
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1236.5 1034 64.9
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1235.3 1034 65.3
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1234.6 1035 64.6
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1234.6 1052 63.8
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1233.0 1044 65.5
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1231.9 1110 63.0
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1231.9 1036 64.7
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1231.5 1049 65.3
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 1036 64.6
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 1036 64.6
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 1035 65.6
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 1093 64.5
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1227.6 1093 62.1
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1226.1 1090 63.4
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1226.1 1204 58.5
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1224.2 1038 66.5
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1223.8 1040 65.8
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1223.8 1039 65.5
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1221.8 1052 64.0
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1221.5 1089 63.4
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1218.0 1038 64.1
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1216.8 1078 62.6
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1216.1 1074 62.9
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1211.1 1067 62.7
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1206.0 1080 63.3
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1204.5 1063 62.7
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1201.4 1038 64.5
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1190.6 1075 62.5
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1184.9 1045 61.6
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1183.7 1035 64.0
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1182.5 1040 62.5
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1179.9 1041 62.9
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1176.4 1037 63.4
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1172.5 1035 63.6
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1171.8 1039 61.9
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1168.3 1038 62.1
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 0.0e+00 1165.6 1049 61.3
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1164.4 1035 62.7
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1161.0 1035 62.0
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1159.4 1047 61.6
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1159.4 1036 61.1
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1158.7 1035 61.6
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1158.7 1035 61.6
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1158.7 1035 61.9
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1158.7 1035 60.8
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1158.3 1035 61.7
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1157.5 1037 61.8
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1157.5 1035 61.6
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1156.4 1034 62.7
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1156.4 1031 61.7
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1155.2 1049 60.2
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1153.3 1037 61.5
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1153.3 1038 61.8
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1153.3 1039 60.0
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1152.5 1040 62.0
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1152.5 1039 61.7
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1150.6 1037 61.5
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1147.1 1037 61.2
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1141.7 1023 60.4
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1124.4 1040 60.6
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1121.7 1036 61.1
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1105.9 868 69.7
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1103.6 892 68.3
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1090.1 1034 58.7
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 3.6e-306 1055.0 1007 64.7
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 1.3e-303 1046.6 965 62.0
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 1.2e-301 1040.0 920 63.4
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 2.7e-301 1038.9 868 65.7
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.1e-282 976.1 1045 53.4
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 4.1e-278 961.8 1034 53.7
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.7e-276 956.4 1107 50.1
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 3.0e-276 955.7 1034 55.9
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 3.7e-271 938.7 1095 49.9
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 4.0e-265 918.7 1036 50.9
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 8.7e-260 901.0 1036 52.3
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 4.2e-238 828.9 809 58.1
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.1e-219 767.7 645 66.4
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 4.2e-214 749.2 749 56.2
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 9.4e-206 721.5 627 63.2
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 4.4e-203 712.6 854 51.3
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.4e-188 664.5 575 64.3
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 8.0e-181 638.6 584 62.2
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 6.8e-172 609.0 700 52.3
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 5.6e-150 536.2 1044 33.9
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 2.6e-131 474.2 407 61.7
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 1.3e-130 471.9 383 62.4
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 5.8e-123 446.4 348 66.4
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 3.8e-122 443.7 269 82.9
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.5e-121 439.9 330 68.2
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.9e-118 431.4 274 78.5
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 4.3e-118 430.3 1033 30.7
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.2e-114 417.9 371 60.9
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 4.2e-113 413.7 270 78.5
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.1e-108 399.1 1336 27.5
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 8.5e-106 389.4 955 33.2
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 1.4e-105 388.7 298 67.1
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 2.8e-101 374.4 795 34.3
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.2e-89 333.2 299 59.5
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.5e-74 283.5 205 68.8
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.5e-73 282.3 259 59.8
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 4.2e-73 280.8 168 79.8
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.8e-71 275.4 230 65.2
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 8.0e-64 250.0 145 86.2
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.2e-56 226.1 144 76.4
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.7e-56 224.2 204 60.3
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 5.8e-54 217.2 189 62.4
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 2.2e-53 215.3 175 66.3
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 6.6e-50 203.8 254 50.0
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-49 203.0 129 76.0
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.2e-47 194.1 129 72.9
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 2.2e-45 188.7 105 87.6
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 9.2e-44 183.3 214 52.3
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 4.3e-41 174.5 98 86.7
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.5e-41 173.3 125 70.4
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 5.8e-38 164.1 122 69.7
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 9.9e-38 163.3 161 53.4
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.7e-37 162.5 109 72.5
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 3.8e-29 134.8 85 72.9
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 7.8e-27 127.1 211 43.6
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 3.4e-22 111.7 139 48.2
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 3.4e-22 111.7 85 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.1e-20 106.7 173 35.3
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 9.0e-15 87.0 42 95.2
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 1.4e-07 63.2 45 68.9
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 1.0e-05 57.0 54 51.9


User provided reference genes

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