Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 5.0e-125 451.1 218 100.0
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.4e-74 282.7 245 64.9
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.6e-62 243.4 245 55.9
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 1.6e-62 243.4 242 55.0
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.6e-62 243.4 197 65.0
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 4.6e-62 241.9 246 56.5
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 7.9e-62 241.1 244 55.7
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 2.3e-61 239.6 244 56.6
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 3.0e-61 239.2 246 56.1
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 6.7e-61 238.0 248 55.6
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.1e-60 237.3 247 55.9
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.5e-60 236.9 253 55.7
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 1.9e-60 236.5 249 55.0
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 5.6e-60 235.0 244 55.3
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 7.4e-60 234.6 251 55.4
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 9.6e-60 234.2 221 58.4
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 9.6e-60 234.2 248 55.6
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.3e-59 233.8 220 59.5
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 3.6e-59 232.3 246 53.3
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.8e-59 231.9 249 54.2
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 6.2e-59 231.5 247 55.9
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 1.1e-58 230.7 244 54.5
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 1.4e-58 230.3 246 54.9
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 1.4e-58 230.3 245 53.1
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 1.4e-58 230.3 249 53.8
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 1.8e-58 229.9 247 54.7
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.8e-58 229.9 238 54.6
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 2.4e-58 229.6 247 54.7
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 2.4e-58 229.6 247 54.7
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 2.4e-58 229.6 244 51.6
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 3.1e-58 229.2 248 53.2
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 5.3e-58 228.4 244 52.5
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 5.3e-58 228.4 244 52.5
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 5.3e-58 228.4 220 58.2
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 6.9e-58 228.0 221 56.1
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.9e-58 228.0 247 52.6
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.9e-58 228.0 247 52.6
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.9e-58 228.0 247 52.6
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 6.9e-58 228.0 248 53.2
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 9.0e-58 227.6 248 55.2
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 9.0e-58 227.6 247 53.4
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.2e-57 227.3 246 54.1
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.2e-57 227.3 247 54.3
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.2e-57 227.3 247 54.3
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 1.2e-57 227.3 244 53.3
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.2e-57 227.3 246 52.8
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 1.2e-57 227.3 221 56.6
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 2.0e-57 226.5 221 58.4
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 2.6e-57 226.1 245 53.5
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 2.6e-57 226.1 244 52.9
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.4e-57 225.7 248 52.4
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 3.4e-57 225.7 245 53.1
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 4.5e-57 225.3 220 57.3
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 9.9e-57 224.2 270 51.5
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 9.9e-57 224.2 221 57.5
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 9.9e-57 224.2 250 53.2
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 9.9e-57 224.2 245 54.7
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 2.2e-56 223.0 221 56.1
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 2.2e-56 223.0 221 57.0
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 2.9e-56 222.6 245 53.5
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 2.9e-56 222.6 247 51.8
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 4.9e-56 221.9 236 53.4
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 4.9e-56 221.9 236 53.4
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 4.9e-56 221.9 248 50.8
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 4.9e-56 221.9 249 52.6
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 6.4e-56 221.5 244 52.5
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 8.4e-56 221.1 249 51.0
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.1e-55 220.7 244 54.1
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.1e-55 220.7 245 52.2
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 1.4e-55 220.3 221 55.7
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 1.4e-55 220.3 249 51.8
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.9e-55 219.9 249 51.8
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 2.4e-55 219.5 243 51.0
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 3.2e-55 219.2 247 52.6
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 4.2e-55 218.8 248 50.4
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 7.1e-55 218.0 244 52.5
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.2e-54 217.2 247 50.6
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.2e-54 217.2 244 51.2
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.6e-54 216.9 245 53.9
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 1.6e-54 216.9 221 53.8
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.1e-54 216.5 241 54.4
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 2.7e-54 216.1 247 50.2
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 7.9e-54 214.5 244 51.6
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 1.0e-53 214.2 244 52.5
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 2.1e-51 206.5 198 57.6
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.8e-50 203.4 254 47.6
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 2.6e-49 199.5 205 56.1
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 4.5e-49 198.7 208 52.9
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 4.5e-49 198.7 208 52.9
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.0e-45 187.6 206 53.9
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 1.6e-43 180.3 330 40.6
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.8e-42 176.8 162 58.6
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.8e-42 176.8 132 68.2
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 5.9e-41 171.8 212 45.3
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 6.5e-40 168.3 132 67.4
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 8.5e-40 167.9 244 45.5
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.3e-35 154.1 244 38.9
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 4.8e-35 152.1 244 40.6
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 9.1e-34 147.9 279 36.9
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 4.5e-33 145.6 187 51.3
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 7.7e-33 144.8 360 31.4
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 8.5e-32 141.4 153 53.6
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.2e-31 139.4 178 47.8
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 4.2e-31 139.0 206 41.3
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 9.4e-31 137.9 97 70.1
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.5e-28 130.6 245 38.4
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 3.3e-28 129.4 245 38.0
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.4e-26 124.0 109 60.6
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.0e-24 115.5 186 41.9
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.2e-23 111.7 206 38.3
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 9.4e-23 111.3 168 44.6
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 5.5e-15 85.5 43 95.3
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 7.2e-15 85.1 112 45.5
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 2.3e-13 80.1 113 36.3
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 8.2e-11 71.6 76 53.9
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.8e-10 70.5 140 37.9
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 5.3e-10 68.9 113 39.8


User provided reference genes

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