Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 7.0e-190 667.2 345 100.0
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 9.9e-168 593.6 331 93.1
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.2e-165 586.6 323 92.9
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 2.7e-165 585.5 331 92.1
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.0e-164 583.6 331 92.1
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.3e-164 583.2 341 88.9
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.5e-163 579.7 338 89.9
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.2e-162 576.6 350 84.6
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.4e-161 573.2 350 84.3
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.8e-161 572.8 335 86.9
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 2.4e-161 572.4 333 86.5
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 6.8e-161 570.9 333 86.8
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.5e-160 569.7 350 84.0
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 2.6e-160 568.9 350 84.3
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.4e-158 562.4 325 88.6
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 9.3e-158 560.5 323 87.3
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 9.3e-158 560.5 352 81.2
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.6e-157 559.7 340 85.9
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 4.6e-157 558.1 324 86.7
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.0e-156 557.0 334 85.3
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 5.1e-156 554.7 327 86.2
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 6.6e-156 554.3 324 87.0
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.1e-155 553.5 326 87.1
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.5e-155 553.1 341 84.2
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.5e-155 553.1 324 86.7
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 2.5e-155 552.4 326 86.8
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.5e-155 552.4 324 86.4
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 3.3e-155 552.0 325 87.1
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 7.3e-155 550.8 323 85.8
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 9.6e-155 550.4 345 82.0
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.3e-154 550.1 322 86.0
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.3e-154 550.1 343 82.5
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.3e-154 550.1 324 85.8
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.6e-154 549.7 324 86.4
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 2.8e-154 548.9 338 83.7
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.8e-154 548.9 321 86.3
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 3.6e-154 548.5 326 86.2
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.6e-154 548.5 324 85.5
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 3.6e-154 548.5 346 82.1
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 6.2e-154 547.7 325 85.2
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 6.2e-154 547.7 321 86.6
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 8.1e-154 547.4 321 86.0
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.4e-153 546.6 330 85.2
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.4e-153 546.6 360 79.4
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.4e-153 546.6 351 80.9
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.4e-153 545.8 321 85.7
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 3.1e-153 545.4 351 80.6
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.0e-153 545.0 343 81.9
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 6.9e-153 544.3 352 81.8
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 6.9e-153 544.3 343 81.9
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 9.0e-153 543.9 341 82.1
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.2e-152 543.5 335 83.0
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-152 543.1 321 86.0
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 3.4e-152 542.0 324 85.5
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.4e-152 542.0 323 85.4
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.4e-152 542.0 323 85.4
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 7.6e-152 540.8 344 81.4
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 9.9e-152 540.4 336 82.7
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.9e-152 540.4 340 83.2
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-151 540.0 335 82.7
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.7e-151 539.7 335 82.4
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 1.7e-151 539.7 333 83.2
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.9e-151 538.9 325 85.5
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.9e-151 538.9 332 82.5
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 3.8e-151 538.5 346 81.8
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 3.8e-151 538.5 335 82.1
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 6.4e-151 537.7 341 80.9
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.4e-151 537.7 341 80.9
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 8.4e-151 537.3 320 85.3
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 1.1e-150 537.0 319 86.2
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.4e-150 536.6 351 80.9
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.4e-150 536.6 351 79.8
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 4.2e-150 535.0 340 79.7
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.4e-150 534.6 338 81.1
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 7.1e-150 534.3 341 80.6
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.2e-149 533.5 321 84.4
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 2.1e-149 532.7 324 83.0
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.7e-149 532.3 324 81.8
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.7e-149 532.3 343 81.0
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 3.5e-149 531.9 324 81.8
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 3.5e-149 531.9 331 81.6
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 3.5e-149 531.9 338 81.1
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.6e-149 531.6 324 82.7
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 6.0e-149 531.2 325 82.2
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 6.0e-149 531.2 324 82.4
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 6.0e-149 531.2 325 82.2
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 7.9e-149 530.8 324 81.5
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 7.9e-149 530.8 324 82.4
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.0e-148 530.4 324 82.1
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.3e-148 530.0 332 81.3
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.8e-148 529.6 324 82.4
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 2.3e-148 529.3 333 80.5
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 6.7e-148 527.7 325 82.5
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 6.7e-148 527.7 324 81.8
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 6.7e-148 527.7 333 81.4
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 8.7e-148 527.3 324 82.4
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.5e-147 526.6 325 81.5
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.5e-147 526.6 325 83.1
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.9e-147 526.2 355 77.2
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 2.5e-147 525.8 324 81.8
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 3.3e-147 525.4 323 82.4
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 3.3e-147 525.4 325 81.5
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 3.3e-147 525.4 321 82.9
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 5.6e-147 524.6 322 83.9
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 5.6e-147 524.6 324 81.8
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 5.6e-147 524.6 324 81.8
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 9.6e-147 523.9 298 87.9
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 9.6e-147 523.9 343 79.0
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.3e-146 523.5 335 80.6
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 2.1e-146 522.7 324 81.5
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 3.6e-146 521.9 344 77.9
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 4.8e-146 521.5 324 81.2
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 4.8e-146 521.5 324 81.2
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 8.1e-146 520.8 332 81.6
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.1e-146 520.8 300 86.7
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 8.1e-146 520.8 351 78.1
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-145 520.0 341 79.2
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-145 520.0 341 79.2
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 6.9e-145 517.7 344 77.3
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.5e-144 516.5 340 80.0
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.5e-144 516.5 430 66.7
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.8e-144 514.6 370 74.1
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 5.8e-144 514.6 336 78.3
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.3e-143 513.5 362 73.8
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 2.2e-143 512.7 388 70.9
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.9e-143 512.3 333 77.5
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 4.9e-143 511.5 367 73.0
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.4e-142 509.2 321 81.6
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 9.3e-142 507.3 321 81.3
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.5e-141 505.4 287 88.2
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.3e-140 503.4 322 79.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.3e-140 503.4 287 87.8
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 6.9e-137 491.1 298 83.9
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.0e-135 487.3 325 76.9
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 1.7e-135 486.5 325 76.0
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 6.5e-135 484.6 325 76.0
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.4e-134 483.4 330 76.1
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.0e-133 478.0 324 74.7
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 3.0e-132 475.7 324 75.9
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.3e-131 472.2 327 73.1
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.4e-131 471.1 324 73.8
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.6e-130 469.9 338 71.3
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 3.7e-130 468.8 329 73.6
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 4.8e-130 468.4 299 78.9
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 6.3e-130 468.0 301 77.7
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 3.2e-126 455.7 333 70.9
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.6e-125 452.2 289 81.3
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.1e-117 426.4 324 67.3
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 9.4e-110 401.0 250 81.6
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.8e-108 396.7 322 63.4
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.1e-105 387.5 241 84.6
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.2e-104 384.0 251 80.5
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 8.2e-98 361.3 289 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.6e-93 347.1 236 75.8
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 4.0e-84 315.8 295 63.4
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 4.6e-72 275.8 170 82.9
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.6e-69 267.3 160 85.0
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 8.0e-69 265.0 308 50.0
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 8.6e-63 245.0 349 46.4
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 4.3e-54 216.1 112 94.6
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 4.6e-48 196.1 113 87.6
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.7e-42 177.6 170 60.6
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.7e-42 177.6 170 60.6
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.7e-42 177.6 170 60.6
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 5.4e-33 146.0 284 34.9
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 2.7e-32 143.7 104 68.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.8e-31 141.0 102 69.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.8e-31 141.0 102 69.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 5.1e-31 139.4 101 68.3
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.1e-30 138.3 102 68.6
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 9.6e-30 135.2 106 65.1
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 3.1e-28 130.2 107 60.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 4.5e-27 126.3 106 60.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.4e-19 100.1 67 80.6
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.3e-18 98.2 64 73.4
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 4.6e-16 89.7 49 87.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 8.7e-15 85.5 61 75.4
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 2.3e-07 60.8 38 71.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 2.5e-06 57.4 38 68.4


User provided reference genes

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