Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 3.4e-208 728.0 350 100.0
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.4e-177 626.3 351 85.2
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 6.9e-177 624.0 351 84.9
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.3e-175 619.8 351 84.3
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 3.8e-175 618.2 352 84.1
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 5.0e-175 617.8 352 84.7
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 6.1e-173 610.9 352 83.2
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 7.9e-173 610.5 350 84.6
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 7.9e-173 610.5 339 85.5
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 1.7e-170 602.8 362 81.5
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 5.5e-166 587.8 351 80.1
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.1e-165 585.9 351 80.3
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 3.2e-150 535.4 352 73.6
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.3e-146 523.5 358 69.8
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 8.2e-146 520.8 359 69.4
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 7.7e-144 514.2 358 69.3
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 2.2e-143 512.7 352 69.9
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 5.5e-142 508.1 362 68.8
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 9.4e-142 507.3 362 70.2
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 9.4e-142 507.3 358 66.8
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 3.6e-141 505.4 344 70.6
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 4.7e-141 505.0 360 68.6
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 6.1e-141 504.6 360 68.9
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.4e-140 503.4 366 67.5
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 3.0e-140 502.3 361 67.6
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 6.8e-140 501.1 359 67.4
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 2.4e-137 492.7 367 66.2
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 3.1e-137 492.3 361 65.1
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 7.0e-137 491.1 358 66.5
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 1.6e-136 490.0 366 64.5
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.6e-136 490.0 362 66.9
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.5e-136 488.8 359 66.3
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.3e-135 486.9 362 66.6
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.8e-135 485.3 366 63.9
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.5e-134 482.6 362 65.5
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 4.2e-134 481.9 372 65.9
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 5.5e-134 481.5 365 66.0
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 5.5e-134 481.5 360 64.7
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 5.5e-134 481.5 352 67.3
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 9.5e-134 480.7 351 67.5
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 9.5e-134 480.7 339 65.8
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.2e-133 480.3 363 63.9
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 3.6e-133 478.8 357 65.0
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 8.0e-133 477.6 362 65.5
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.0e-132 475.7 320 69.4
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 5.2e-132 474.9 359 64.1
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 6.8e-132 474.6 363 64.5
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.2e-131 473.8 356 63.8
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.6e-131 472.6 359 64.9
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 3.4e-131 472.2 343 65.9
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 2.2e-130 469.5 341 65.4
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 3.1e-129 465.7 336 65.5
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.1e-129 465.3 358 64.0
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 9.2e-129 464.2 344 65.1
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.6e-128 463.4 343 63.3
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.6e-128 463.4 352 61.6
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.0e-128 463.0 340 64.1
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 2.7e-128 462.6 340 63.8
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 5.9e-128 461.5 340 62.9
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.9e-128 461.5 407 57.0
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 7.8e-128 461.1 341 62.8
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.0e-127 460.7 342 63.5
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 5.0e-127 458.4 367 61.6
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 8.6e-127 457.6 356 64.6
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 2.5e-126 456.1 352 62.2
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 2.5e-126 456.1 341 62.8
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 4.3e-126 455.3 341 62.2
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 5.6e-126 454.9 367 61.6
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.2e-125 453.8 355 60.6
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.6e-125 453.4 341 63.0
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.6e-125 453.4 341 63.0
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.6e-125 452.2 343 61.2
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 4.7e-125 451.8 352 63.6
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 4.7e-125 451.8 352 63.6
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 6.1e-125 451.4 341 62.2
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.4e-124 450.3 489 50.9
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.3e-124 449.5 341 61.6
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.5e-123 446.8 359 63.2
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 2.0e-123 446.4 339 62.5
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 2.6e-123 446.0 339 62.5
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.6e-123 446.0 338 62.1
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 3.4e-123 445.7 347 64.0
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 7.5e-123 444.5 340 61.5
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 7.5e-123 444.5 432 53.0
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.2e-122 443.0 361 61.2
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 7.0e-121 438.0 360 60.0
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.2e-120 437.2 354 63.0
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 3.5e-120 435.6 322 67.1
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 4.6e-120 435.3 343 64.1
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 2.3e-119 433.0 431 53.1
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 6.2e-117 424.9 383 55.1
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 4.0e-116 422.2 302 67.5
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.2e-116 421.8 356 60.1
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 2.7e-112 409.5 337 58.5
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 4.3e-110 402.1 367 56.4
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 9.5e-110 401.0 237 76.8
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 3.1e-108 396.0 356 54.5
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.2e-107 394.0 359 56.3
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 2.0e-107 393.3 297 63.0
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 7.1e-105 384.8 353 56.9
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.0e-103 380.9 355 51.5
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 3.9e-103 379.0 383 49.9
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.9e-102 376.7 361 56.5
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 2.4e-97 359.8 318 56.9
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 7.1e-97 358.2 357 54.6
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.0e-95 354.4 246 67.9
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 5.6e-94 348.6 205 79.0
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 8.1e-93 344.7 431 42.7
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 9.9e-91 337.8 291 60.1
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.9e-89 333.6 208 74.0
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 2.6e-83 313.2 291 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 7.9e-80 301.6 409 40.6
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 1.1e-78 297.7 154 85.1
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.3e-78 296.2 345 43.2
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 5.6e-78 295.4 345 47.0
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 9.9e-75 284.6 376 40.7
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 4.3e-70 269.2 225 60.0
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 6.5e-66 255.4 134 85.1
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 6.0e-64 248.8 127 85.8
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 2.4e-52 210.3 260 43.8
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.4e-52 210.3 260 43.8
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 4.8e-45 186.0 188 50.5
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 4.8e-45 186.0 188 50.5
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 1.7e-42 177.6 280 37.5
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 6.1e-40 169.1 193 48.2
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 6.1e-40 169.1 156 54.5
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.5e-38 164.5 83 88.0
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 4.0e-31 139.8 77 81.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 2.7e-24 117.1 112 53.6
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.0e-22 110.9 117 49.6
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.1e-20 105.1 199 33.2
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.6e-16 90.1 122 41.0
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.0e-07 62.0 108 41.7


User provided reference genes

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