Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 1.2e-114 416.4 198 100.0
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 4.3e-67 258.5 220 63.2
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 3.4e-64 248.8 247 57.9
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 1.4e-62 243.4 126 92.9
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 3.2e-62 242.3 246 56.1
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 4.2e-62 241.9 238 55.9
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 2.7e-61 239.2 232 56.5
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 3.5e-61 238.8 232 56.0
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 6.0e-61 238.0 232 56.5
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 6.0e-61 238.0 232 56.5
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 1.3e-60 236.9 295 48.1
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.8e-60 236.5 232 56.5
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 3.0e-60 235.7 233 55.8
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 1.1e-59 233.8 233 55.4
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 1.1e-59 233.8 232 55.6
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 1.1e-59 233.8 232 54.7
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 1.9e-59 233.0 232 55.2
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 4.3e-59 231.9 232 54.7
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 1.3e-58 230.3 232 55.2
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 2.1e-58 229.6 233 54.5
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.1e-58 229.6 232 53.9
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 2.1e-58 229.6 232 53.9
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 2.8e-58 229.2 232 55.2
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 3.7e-58 228.8 232 55.2
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 6.3e-58 228.0 232 53.9
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 8.2e-58 227.6 232 53.9
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 1.1e-57 227.3 232 54.3
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 1.8e-57 226.5 232 54.3
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 2.4e-57 226.1 231 54.5
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 3.1e-57 225.7 232 54.3
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 4.1e-57 225.3 238 53.4
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 6.9e-57 224.6 232 54.7
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 9.0e-57 224.2 232 54.7
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 9.0e-57 224.2 232 54.3
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 9.0e-57 224.2 232 54.3
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 9.0e-57 224.2 233 52.8
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 9.0e-57 224.2 232 53.4
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.2e-56 223.8 231 53.2
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 1.5e-56 223.4 232 53.9
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 1.5e-56 223.4 230 52.6
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 2.6e-56 222.6 232 54.3
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 2.6e-56 222.6 231 54.5
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 4.5e-56 221.9 232 53.9
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 5.9e-56 221.5 232 53.4
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 5.9e-56 221.5 232 53.0
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 7.6e-56 221.1 255 49.4
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.0e-55 220.7 230 53.5
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.0e-55 220.7 232 52.6
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 1.3e-55 220.3 232 53.4
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 3.8e-55 218.8 232 53.0
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 3.8e-55 218.8 272 47.1
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 3.8e-55 218.8 230 53.0
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 5.0e-55 218.4 230 51.7
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 6.5e-55 218.0 232 52.2
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 1.1e-54 217.2 232 52.6
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.4e-54 216.9 227 53.7
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 1.4e-54 216.9 230 52.6
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.4e-54 216.9 232 51.7
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 2.5e-54 216.1 230 53.0
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.5e-54 216.1 232 51.7
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 2.5e-54 216.1 264 48.1
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 3.2e-54 215.7 230 53.0
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 4.2e-54 215.3 230 52.6
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 7.2e-54 214.5 230 52.2
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 9.3e-54 214.2 230 52.6
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 1.6e-53 213.4 230 52.6
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 2.7e-53 212.6 232 53.0
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 3.5e-53 212.2 230 52.2
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 3.5e-53 212.2 230 52.2
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 3.5e-53 212.2 230 52.2
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 3.5e-53 212.2 213 54.5
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 6.1e-53 211.5 232 51.7
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 7.9e-53 211.1 245 50.2
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 7.9e-53 211.1 230 51.7
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.0e-52 210.7 232 51.7
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 1.0e-52 210.7 232 52.2
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 3.3e-51 205.7 262 47.3
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 9.7e-51 204.1 238 47.9
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.3e-50 203.8 233 48.9
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.3e-50 203.8 233 48.9
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.3e-50 203.8 233 48.9
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 4.8e-50 201.8 231 47.2
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 6.3e-50 201.4 210 54.3
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 8.2e-50 201.1 233 48.5
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 3.1e-49 199.1 132 73.5
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 5.3e-49 198.4 209 53.6
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 1.5e-48 196.8 211 53.1
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 7.7e-48 194.5 219 53.9
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 1.0e-47 194.1 210 51.9
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 1.1e-46 190.7 286 40.9
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 1.9e-46 189.9 210 52.9
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 4.2e-46 188.7 241 46.5
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 5.5e-46 188.3 247 45.3
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 9.4e-46 187.6 212 50.9
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 2.7e-45 186.0 234 46.6
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 7.9e-45 184.5 210 51.9
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 1.4e-44 183.7 236 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 3.0e-44 182.6 234 44.4
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 3.0e-44 182.6 209 50.2
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 3.9e-44 182.2 213 48.4
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 5.1e-44 181.8 222 49.5
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 1.1e-43 180.6 210 50.5
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.5e-43 179.5 210 49.0
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 3.7e-42 175.6 209 49.8
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 4.8e-42 175.3 231 43.7
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.8e-41 173.3 231 45.0
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.8e-41 173.3 229 41.9
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 2.4e-41 172.9 150 60.7
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 5.3e-41 171.8 234 43.2
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.6e-40 169.5 163 60.1
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 7.2e-38 161.4 231 41.1
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.5e-35 153.7 148 56.1
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 3.7e-34 149.1 149 55.0
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 1.3e-31 140.6 230 37.8
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 5.0e-31 138.7 104 66.3
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 1.9e-30 136.7 88 73.9
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.2e-29 134.0 104 65.4
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 2.7e-29 132.9 116 61.2
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 3.6e-29 132.5 128 55.5
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 3.0e-28 129.4 202 39.1
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 6.7e-28 128.3 159 47.2
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 3.3e-27 125.9 254 32.7
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 9.1e-25 117.9 202 37.6
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 7.7e-24 114.8 219 32.4
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 3.4e-19 99.4 99 53.5
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.3e-18 97.4 220 30.0
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 3.1e-17 92.8 110 50.9
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 5.0e-15 85.5 146 38.4
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 1.5e-14 84.0 101 49.5
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 2.7e-13 79.7 84 54.8
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.3e-12 76.6 160 33.8
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 1.5e-11 73.9 61 57.4
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-10 70.9 157 30.6
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.2e-10 70.1 188 29.8
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 1.1e-09 67.8 42 66.7
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-09 67.8 188 29.3
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 7.0e-09 65.1 72 47.2
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.6e-08 63.9 188 28.2
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 2.9e-07 59.7 77 46.8
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 2.9e-07 59.7 129 31.0
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.8e-07 59.3 163 28.8
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.0e-07 58.9 155 27.7
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 9.5e-06 54.7 145 33.1


User provided reference genes

Program Settings