Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 0.0e+00 2361.6 1390 100.0
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1211.1 1422 60.7
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1173.7 1428 58.7
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1171.0 1429 58.7
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1156.0 1433 58.1
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1138.6 1418 58.5
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1135.2 1418 58.5
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1112.1 1508 56.4
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1087.8 1418 56.2
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1086.6 1436 58.4
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 4.7e-309 1065.1 1452 57.5
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 5.2e-308 1061.6 1420 55.5
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.1e-305 1052.4 1446 56.7
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 1.6e-304 1050.0 1445 57.0
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 2.1e-301 1039.6 1432 55.3
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 4.7e-301 1038.5 1437 55.7
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 4.4e-299 1031.9 1445 57.4
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 5.7e-299 1031.6 1252 62.9
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 5.7e-299 1031.6 1443 56.4
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 2.4e-297 1026.2 1424 54.1
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.7e-296 1022.7 1460 55.6
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.5e-296 1021.9 1255 55.9
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.0e-295 1020.8 1420 53.0
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 2.9e-295 1019.2 1408 54.5
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 5.5e-294 1015.0 1477 57.2
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.2e-291 1007.3 1426 50.8
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 7.5e-291 1004.6 1425 56.5
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 2.8e-290 1002.7 1426 54.3
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.1e-289 1000.7 1446 55.7
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 1.8e-289 1000.0 1444 54.4
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.5e-288 995.3 1449 54.0
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 4.0e-284 982.2 1423 55.3
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 8.9e-284 981.1 1452 55.3
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 2.0e-283 979.9 1363 54.5
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.8e-282 976.1 1216 53.2
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 6.3e-282 974.9 1463 55.4
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.4e-281 973.8 1429 51.4
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 4.5e-280 968.8 1412 52.8
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 3.0e-276 956.1 1205 54.9
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 4.0e-276 955.7 1486 53.5
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 2.4e-273 946.4 1413 52.4
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 7.8e-272 941.4 1277 51.8
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 6.6e-271 938.3 939 59.2
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 1.6e-269 933.7 1421 51.7
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 2.3e-268 929.9 1422 52.0
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 8.3e-266 921.4 1418 50.7
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 2.4e-265 919.8 1413 50.5
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 4.1e-265 919.1 1415 52.2
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.5e-264 916.0 1453 53.6
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 6.0e-264 915.2 1419 50.2
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 1.3e-263 914.1 1274 50.8
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 1.7e-263 913.7 1418 45.9
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 2.3e-263 913.3 1435 52.4
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 5.8e-259 898.7 1413 51.2
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 7.5e-259 898.3 1461 53.5
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 9.9e-259 897.9 1434 51.0
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 9.9e-259 897.9 1444 50.6
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 1.3e-258 897.5 1426 49.3
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 2.2e-258 896.7 1405 50.0
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.9e-258 895.6 1443 52.7
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 2.4e-257 893.3 1463 52.4
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 2.1e-256 890.2 1422 48.8
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 7.8e-256 888.3 1442 48.4
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 5.1e-255 885.6 1425 49.3
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 1.9e-254 883.6 1561 47.5
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 2.5e-254 883.2 1451 49.3
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 5.6e-254 882.1 1419 46.8
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 7.3e-254 881.7 1448 47.9
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 1.6e-253 880.6 1416 48.5
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 4.4e-251 872.5 1486 45.4
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 9.9e-251 871.3 1446 49.7
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 3.8e-250 869.4 1427 48.2
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 8.4e-250 868.2 1436 51.0
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.3e-242 844.3 1386 50.1
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.4e-241 840.9 1399 46.0
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.9e-241 840.5 1408 49.4
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 2.4e-241 840.1 1081 51.4
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 4.2e-241 839.3 1275 48.2
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 8.1e-237 825.1 1425 46.0
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.9e-233 813.9 877 58.0
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 8.7e-231 805.1 1460 45.9
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 4.3e-230 802.7 1439 46.4
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 9.6e-230 801.6 1415 45.9
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 3.1e-228 796.6 1430 46.4
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 1.1e-225 788.1 1213 54.4
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 1.6e-224 784.3 1432 44.3
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 1.3e-223 781.2 1470 42.9
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 2.3e-223 780.4 1439 44.5
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 5.1e-223 779.2 1464 44.3
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 9.6e-222 775.0 1464 43.4
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 1.3e-215 754.6 1475 42.7
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 6.7e-215 752.3 1554 43.4
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 8.7e-215 751.9 1436 43.5
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 8.2e-213 745.3 1468 43.5
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 8.2e-213 745.3 1432 42.7
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 8.2e-213 745.3 1432 42.7
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.4e-212 744.6 1465 42.7
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 1.8e-212 744.2 1434 42.6
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 9.0e-212 741.9 960 51.8
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.5e-211 741.1 1544 43.8
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 7.7e-211 738.8 1065 55.0
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.0e-210 738.4 1438 42.4
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 3.6e-208 729.9 1375 43.3
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.0e-202 711.8 1446 40.0
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 6.5e-202 709.1 1421 41.1
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 5.1e-199 699.5 1349 42.7
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 2.0e-198 697.6 825 55.4
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.8e-197 693.7 1147 48.5
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.0e-194 685.3 1417 43.7
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.1e-190 671.8 955 48.2
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 7.2e-185 652.5 1123 51.1
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.9e-177 627.9 1412 38.0
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.8e-175 621.3 830 50.4
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 2.1e-168 597.8 1256 40.5
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 2.6e-166 590.9 1420 41.1
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 2.0e-158 564.7 915 44.0
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 3.3e-145 520.8 1426 39.1
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.1e-135 489.2 572 55.4
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 6.0e-131 473.4 955 37.9
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 1.6e-128 465.3 1278 35.2
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 6.0e-123 446.8 1267 34.7
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.1e-121 442.6 1343 33.4
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 2.4e-111 408.3 1446 30.6
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 2.0e-110 405.2 932 53.1
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 4.9e-109 400.6 1292 37.8
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.8e-106 392.1 320 65.0
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.8e-104 384.0 1421 31.3
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.4e-90 339.3 1428 29.9
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.0e-82 313.2 1454 30.5
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.0e-78 298.9 459 44.2
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 4.2e-76 291.2 1254 29.3
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 1.8e-66 259.2 932 28.9
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.4e-65 254.6 925 29.2
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 5.7e-65 254.2 528 39.8
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.4e-63 249.6 940 27.6
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 2.4e-63 248.8 202 64.9
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 3.1e-63 248.4 915 27.8
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 5.4e-63 247.7 876 28.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 8.5e-61 240.4 369 43.4
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.5e-57 229.6 214 61.2
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 7.0e-55 220.7 262 48.1
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 1.3e-53 216.5 929 28.0
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.7e-51 208.0 1319 29.7
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 1.0e-50 206.8 266 43.6
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 1.0e-50 206.8 928 26.9
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 2.4e-47 195.7 530 34.5
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 3.5e-46 191.8 822 28.1
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.5e-46 191.8 1131 27.7
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 1.3e-45 189.9 1009 26.3
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 2.5e-44 185.7 260 42.7
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 4.7e-43 181.4 483 38.3
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 8.3e-40 170.6 167 53.9
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.2e-38 166.8 689 27.3
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.3e-37 162.5 156 50.6
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 1.1e-36 160.2 162 53.7
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 5.2e-34 151.4 794 27.0
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 1.6e-30 139.8 977 23.5
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 3.5e-30 138.7 1042 24.0
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.7e-29 136.3 1029 23.3
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 9.5e-28 130.6 589 46.9
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 3.6e-27 128.6 850 24.2
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 1.1e-26 127.1 209 61.2
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 1.3e-24 120.2 919 23.3
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 3.7e-24 118.6 84 64.3
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 1.4e-23 116.7 183 35.5
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 6.0e-22 111.3 145 41.4
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 4.3e-20 105.1 88 58.0
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 9.9e-17 94.0 143 39.9
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 2.9e-16 92.4 132 47.0
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 4.2e-15 88.6 90 50.0
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 2.1e-14 86.3 419 28.2
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.7e-14 85.9 121 52.1
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.3e-12 79.0 372 39.2
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 2.1e-11 76.3 86 43.0
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 1.5e-09 70.1 69 53.6
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 4.9e-08 65.1 68 55.9
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.1e-07 63.9 34 82.4
Glyma.16G010466 Glycine max HOM05D001849 ORTHO05D004075 2.1e-06 59.7 34 79.4


User provided reference genes

Program Settings