Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 8.1e-266 920.2 609 100.0
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 5.5e-145 518.8 664 65.5
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 1.2e-136 491.1 667 63.9
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 2.2e-130 470.3 600 64.8
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 1.0e-127 461.5 644 61.5
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 5.1e-127 459.1 664 61.1
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 9.7e-126 454.9 635 61.7
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 1.5e-123 447.6 582 63.9
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 3.4e-123 446.4 649 61.2
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 1.0e-122 444.9 586 64.3
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 1.0e-122 444.9 661 59.9
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 1.7e-122 444.1 665 60.3
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 2.2e-122 443.7 661 59.8
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 2.9e-122 443.4 662 60.0
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 1.9e-121 440.7 632 61.9
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 5.5e-121 439.1 663 59.4
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 1.4e-119 434.5 632 61.7
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 2.6e-118 430.3 712 49.3
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 3.3e-118 429.9 633 61.0
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 5.7e-118 429.1 661 58.7
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 9.7e-118 428.3 655 58.6
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 1.1e-116 424.9 641 59.3
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 1.8e-116 424.1 641 59.6
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 3.1e-116 423.3 641 59.4
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 1.2e-115 421.4 653 59.3
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 4.5e-115 419.5 660 58.0
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 5.9e-115 419.1 558 64.7
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 1.7e-114 417.5 661 58.4
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 4.2e-113 412.9 666 57.5
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 4.2e-113 412.9 661 57.9
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 1.0e-111 408.3 590 60.8
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 1.0e-111 408.3 623 58.9
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 5.2e-111 406.0 637 58.9
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 1.1e-110 404.8 674 57.1
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 1.1e-110 404.8 648 57.3
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 2.6e-110 403.7 638 55.5
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 3.3e-110 403.3 633 55.8
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 3.3e-110 403.3 633 57.3
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 5.7e-110 402.5 638 57.2
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 1.3e-109 401.4 633 57.3
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 4.8e-109 399.4 630 55.2
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 4.8e-109 399.4 613 56.1
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 8.2e-109 398.7 617 59.8
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 8.2e-109 398.7 658 57.4
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 1.8e-108 397.5 640 58.1
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 2.0e-107 394.0 529 65.4
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 3.8e-106 389.8 622 58.8
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 3.2e-105 386.7 638 58.2
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 4.2e-105 386.3 662 56.3
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 4.2e-105 386.3 566 61.1
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 8.0e-104 382.1 618 58.1
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 1.4e-103 381.3 529 64.8
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 4.1e-100 369.8 567 61.0
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 3.5e-99 366.7 646 55.6
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 1.2e-94 351.7 224 76.8
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 9.8e-94 348.6 226 74.8
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 2.4e-92 344.0 220 76.8
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 7.0e-92 342.4 580 53.8
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 1.6e-91 341.3 527 62.0
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 4.5e-91 339.7 580 54.1
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 1.7e-90 337.8 588 56.6
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 6.5e-90 335.9 676 53.6
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 4.2e-89 333.2 640 55.2
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 5.5e-89 332.8 640 55.2
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 4.7e-88 329.7 599 54.3
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 1.4e-87 328.2 659 52.8
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 3.0e-87 327.0 544 59.4
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 2.2e-85 320.9 224 70.5
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 6.3e-85 319.3 214 71.5
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 7.8e-83 312.4 582 55.7
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 7.3e-81 305.8 582 55.0
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 4.0e-79 300.1 642 48.4
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 8.3e-77 292.4 615 39.0
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.8e-76 291.2 190 74.2
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.2e-76 290.4 219 67.6
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 1.7e-74 284.6 586 49.8
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 6.2e-72 276.2 586 47.1
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 4.4e-70 270.0 595 50.8
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 6.0e-67 259.6 581 51.3
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 1.3e-66 258.5 167 74.3
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 2.3e-66 257.7 703 47.7
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 2.8e-64 250.8 641 49.0
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 3.6e-64 250.4 594 49.3
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 2.2e-61 241.1 676 47.2
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 3.3e-57 227.3 529 53.5
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 4.9e-53 213.4 176 58.5
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 2.2e-45 188.0 258 55.0
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 3.8e-37 160.6 141 60.3
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 2.3e-34 151.4 232 40.1
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.9e-34 150.6 241 49.8
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 1.1e-33 149.1 110 63.6
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 4.3e-33 147.1 261 49.0
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 3.5e-27 127.5 269 43.9
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 5.8e-22 110.2 152 56.6
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.8e-21 107.5 155 54.2
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 3.0e-18 97.8 93 72.0
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 3.9e-18 97.4 65 70.8
Cpa.g.c42393 Carica papaya HOM05D007322 ORTHO05D009029 2.8e-16 91.3 135 44.4
Peaxi162Scf00427g00004 Petunia axillaris HOM05D007322 ORTHO05D009029 4.8e-16 90.5 89 52.8
Sabra17G0065200 Salix brachista HOM05D007322 ORTHO05D009029 1.8e-07 62.0 162 32.1
CDE05G3586 Ceratophyllum demersum HOM05D000602 ORTHO05D009029 9.1e-07 59.7 70 41.4
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 9.1e-07 59.7 45 57.8
Cpa.g.c31488 Carica papaya HOM05D007322 ORTHO05D009029 4.5e-06 57.4 60 43.3


User provided reference genes

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