Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 0.0e+00 2011.1 1052 100.0
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 0.0e+00 1194.5 1102 62.0
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1178.7 1072 62.0
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 0.0e+00 1159.8 1150 58.5
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1145.2 1069 59.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1133.2 1133 58.0
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 0.0e+00 1131.7 961 66.7
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 0.0e+00 1128.2 1125 58.4
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1117.8 1071 58.7
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1103.2 1072 58.4
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 0.0e+00 1099.7 995 62.8
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1094.0 1074 59.8
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 0.0e+00 1092.8 1059 59.1
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 0.0e+00 1089.3 1084 58.3
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1084.7 1119 56.3
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 0.0e+00 1083.2 1068 57.9
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 0.0e+00 1080.1 1120 57.1
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 0.0e+00 1077.8 1137 55.9
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 0.0e+00 1075.5 1173 55.4
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 3.6e-311 1071.6 1061 59.4
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 6.0e-309 1064.3 1073 56.9
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 7.9e-309 1063.9 1078 57.5
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 1.3e-308 1063.1 1073 56.8
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 1.1e-307 1060.1 1067 57.8
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 3.3e-307 1058.5 1062 58.6
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.3e-306 1056.6 1073 56.3
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 1.4e-305 1053.1 1137 55.2
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.4e-305 1052.4 1103 57.1
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.5e-304 1048.1 1076 57.4
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 4.5e-304 1048.1 1070 58.5
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 4.5e-304 1048.1 1096 57.1
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 9.9e-304 1047.0 1076 57.2
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 3.8e-303 1045.0 1110 55.4
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 4.2e-302 1041.6 1093 55.7
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 9.3e-302 1040.4 1107 56.0
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 2.7e-301 1038.9 1072 57.2
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 2.3e-300 1035.8 1064 56.9
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 3.9e-300 1035.0 1112 55.0
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 3.9e-300 1035.0 1073 56.5
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 1.1e-299 1033.5 1067 56.9
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 2.5e-299 1032.3 1070 57.1
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 6.2e-298 1027.7 1133 53.6
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 8.2e-298 1027.3 1093 56.5
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 2.4e-297 1025.8 1091 55.6
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 3.1e-297 1025.4 1072 56.3
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 1.2e-296 1023.5 1062 57.0
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 2.5e-294 1015.8 1023 58.1
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.2e-293 1013.4 1073 56.8
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 1.6e-293 1013.1 1093 56.1
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 3.5e-293 1011.9 1069 55.6
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 1.3e-292 1010.0 1079 55.6
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 1.9e-291 1006.1 1079 55.4
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.0e-287 993.8 1070 55.9
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 3.8e-287 991.9 1059 56.7
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 1.2e-285 986.9 1070 55.5
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 1.3e-284 983.4 1060 55.5
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.1e-283 980.3 1124 53.0
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 3.3e-283 978.8 1122 53.2
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 1.7e-282 976.5 1051 55.4
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 4.8e-282 974.9 1110 53.2
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 3.1e-281 972.2 1050 57.2
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 1.1e-278 963.8 1077 55.2
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 7.9e-277 957.6 1037 55.6
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 5.1e-276 954.9 1058 54.9
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 2.6e-275 952.6 1248 49.0
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 4.8e-274 948.3 1152 53.0
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 5.3e-273 944.9 1077 53.7
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 4.5e-272 941.8 1073 52.9
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 5.0e-271 938.3 857 62.0
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.1e-267 927.2 1076 52.7
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.6e-267 926.0 802 64.0
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 6.3e-266 921.4 1184 49.9
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 7.7e-264 914.4 1016 54.8
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 2.2e-263 912.9 1063 52.1
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 3.8e-263 912.1 1075 52.0
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 2.5e-262 909.4 1046 53.1
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.3e-258 897.1 1038 53.0
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 1.4e-257 893.6 1073 50.4
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 2.0e-256 889.8 1048 52.6
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 1.1e-254 884.0 1070 50.5
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 6.8e-252 874.8 1103 49.6
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 6.8e-252 874.8 1073 50.0
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 2.4e-249 866.3 1071 50.4
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 2.4e-249 866.3 1071 50.4
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 8.6e-247 857.8 1066 49.5
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 1.6e-245 853.6 925 54.7
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 1.0e-244 850.9 1062 50.4
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 1.5e-243 847.0 1161 47.9
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 1.5e-243 847.0 956 54.7
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 1.6e-240 837.0 710 64.5
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 4.5e-240 835.5 1018 51.8
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 1.5e-235 820.5 1081 48.5
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 2.0e-235 820.1 1077 48.6
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.2e-232 810.8 589 71.8
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 7.5e-227 791.6 995 50.3
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 2.2e-226 790.0 1058 48.7
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 1.4e-225 787.3 1058 48.7
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 7.3e-222 775.0 616 66.9
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 6.8e-220 768.5 1070 48.0
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 6.8e-220 768.5 1070 48.0
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 5.8e-219 765.4 1083 46.4
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 1.3e-218 764.2 1062 47.4
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 2.2e-218 763.5 1066 47.3
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 3.9e-215 752.7 1066 47.2
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 5.1e-215 752.3 1065 47.2
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 7.6e-211 738.4 1071 46.1
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.6e-208 730.7 688 59.7
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 4.6e-208 729.2 898 50.7
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 5.1e-199 699.1 522 69.7
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 5.6e-198 695.7 863 50.1
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.8e-186 656.4 868 48.6
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 6.2e-181 639.0 855 46.4
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 2.0e-179 634.0 872 45.9
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 4.6e-176 622.9 865 47.2
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 3.0e-175 620.2 1006 42.4
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 1.1e-174 618.2 432 75.0
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 2.6e-171 607.1 880 44.9
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 8.8e-159 565.5 1039 40.0
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 5.3e-156 556.2 364 78.0
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.4e-153 548.1 366 77.3
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 7.2e-153 545.8 959 41.3
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.2e-152 545.0 924 42.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.6e-147 527.3 547 57.6
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.2e-141 507.7 986 38.9
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 3.6e-128 463.8 833 41.8
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 2.2e-125 454.5 718 42.6
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 2.0e-123 448.0 358 69.3
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 6.6e-122 443.0 354 65.0
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 5.4e-116 423.3 334 70.4
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 1.8e-103 381.7 578 48.3
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 2.6e-102 377.9 475 50.7
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.1e-88 331.6 375 53.6
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 3.7e-72 277.7 253 59.7
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 2.0e-70 271.9 377 49.1
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 3.4e-70 271.2 378 44.4
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.2e-68 264.6 545 36.9
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.2e-68 264.6 545 36.9
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 2.5e-60 238.4 297 45.5
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 1.3e-53 216.1 285 48.1
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 6.5e-53 213.8 156 68.6
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 4.6e-51 207.6 273 49.1
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 6.1e-51 207.2 154 70.1
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 8.8e-50 203.4 343 37.3
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 9.1e-47 193.4 164 62.2
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 5.9e-46 190.7 129 70.5
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.9e-45 188.3 152 59.2
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 6.5e-45 187.2 361 41.3
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.4e-42 179.5 107 83.2
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 6.7e-42 177.2 167 60.5
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 5.3e-39 167.5 136 67.6
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 9.1e-39 166.8 288 37.8
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 5.2e-34 151.0 135 60.0
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 4.8e-32 144.4 104 72.1
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 4.1e-31 141.4 414 32.1
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 5.5e-28 131.0 75 84.0
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 3.6e-27 128.3 75 82.7
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 1.8e-26 125.9 85 74.1
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 5.2e-18 97.8 158 40.5
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 5.7e-17 94.4 68 69.1
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 5.7e-17 94.4 496 29.8
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 3.1e-15 88.6 81 54.3
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.7e-14 85.5 50 80.0
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.7e-13 82.8 99 48.5
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.3e-13 82.4 50 76.0
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.1e-12 80.1 52 69.2
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 3.3e-12 78.6 57 63.2
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 4.3e-12 78.2 105 49.5
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 5.6e-12 77.8 85 55.3
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 3.4e-09 68.6 49 67.3
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 2.9e-08 65.5 57 54.4
CsaV3_3G013900 Cucumis sativus L. HOM05D002494 ORTHO05D002673 9.2e-07 60.5 320 24.1
Sed0003410 Sechium edule HOM05D002494 ORTHO05D002673 1.6e-06 59.7 320 25.0
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 2.0e-06 59.3 242 26.4
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 3.5e-06 58.5 254 26.4
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 3.5e-06 58.5 258 26.7


User provided reference genes

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