Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1819.7 977 100.0
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1365.5 985 75.2
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1362.8 1012 73.3
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1362.4 1000 74.3
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1349.3 1003 72.8
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1348.6 980 73.9
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1347.8 983 75.6
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1347.8 980 74.4
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1347.4 977 74.3
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1347.4 989 75.1
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1343.9 977 73.6
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1324.3 983 72.6
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1317.0 992 72.6
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1310.8 990 73.6
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1307.0 984 72.2
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1290.4 1013 70.7
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1286.2 1008 70.0
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1284.6 993 70.5
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1284.6 993 70.5
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1278.8 1186 62.3
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1278.5 1026 68.1
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1278.1 1012 69.5
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1277.3 995 69.7
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1273.1 1010 69.4
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1271.5 1014 69.1
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1269.2 1014 68.5
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1268.4 987 71.0
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1268.4 987 71.0
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1268.4 1069 66.1
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1266.9 1007 69.1
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1262.3 1011 68.2
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1258.0 1012 68.6
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1254.2 1018 68.6
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1252.3 1019 68.4
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1252.3 1025 68.9
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1250.0 1055 65.2
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1249.2 1012 68.0
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1248.8 1046 65.6
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 997 69.6
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1241.1 1050 64.6
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1237.6 1050 67.0
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1236.9 1068 66.0
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1236.5 1016 67.7
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1234.2 1040 66.5
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1233.8 1089 65.3
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1233.4 982 68.4
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1226.5 1060 65.9
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1226.1 1016 66.4
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1225.7 1043 64.6
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1225.3 1000 68.8
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1221.8 1005 67.1
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1216.1 1069 65.1
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1211.4 1070 65.3
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1210.3 981 68.4
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1209.9 996 67.1
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1209.1 995 66.5
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1208.0 995 67.0
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1203.3 999 67.5
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1198.7 990 66.2
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1198.7 990 66.2
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1197.6 990 66.2
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1196.0 1062 64.7
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1194.1 998 67.5
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1191.4 990 66.5
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1190.6 867 75.9
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1187.6 832 78.4
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1186.4 1008 65.2
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1185.2 983 66.8
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1184.1 994 65.5
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1183.7 989 65.7
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1183.3 990 66.1
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1183.3 990 66.1
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1180.6 994 65.1
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1179.9 993 65.6
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1177.9 991 65.5
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1175.2 1016 65.1
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1174.5 1001 65.2
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1170.6 988 65.4
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1168.3 988 65.3
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1146.0 992 64.0
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1138.6 1001 63.7
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1114.4 1010 60.2
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1092.0 1011 61.6
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1078.9 821 70.8
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1075.1 1020 59.6
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 2.7e-311 1072.0 996 62.0
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 6.6e-310 1067.4 927 65.0
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 2.5e-309 1065.4 1020 58.1
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 3.9e-302 1041.6 980 62.4
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 8.9e-299 1030.4 888 66.9
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 5.3e-267 924.9 1027 51.8
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.2e-263 913.7 1090 49.3
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 4.6e-263 911.8 1077 51.2
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 3.0e-262 909.1 1012 54.0
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 5.9e-258 894.8 993 51.4
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 9.7e-245 850.9 781 61.7
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 7.5e-237 824.7 745 62.7
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 9.4e-232 807.7 790 60.6
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 1.5e-213 747.3 596 68.5
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 4.7e-207 725.7 602 67.8
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 4.7e-207 725.7 937 50.1
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 5.6e-192 675.6 550 68.0
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 2.4e-179 633.6 607 60.3
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 7.6e-165 585.5 556 59.2
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 1.9e-152 544.3 990 35.3
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 2.9e-132 477.2 414 60.6
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 5.5e-131 473.0 386 63.2
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 1.1e-123 448.7 262 86.3
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 7.2e-123 446.0 278 82.0
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 8.0e-122 442.6 994 31.8
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.3e-121 441.0 305 71.1
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 4.1e-118 430.3 277 79.8
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.2e-117 428.7 398 57.8
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 6.1e-114 416.4 313 69.6
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 5.2e-105 386.7 907 31.3
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 6.8e-105 386.3 383 56.7
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 3.4e-104 384.0 1327 28.8
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 1.7e-92 345.1 809 32.4
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.2e-87 328.2 289 61.2
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 9.9e-80 302.8 173 85.0
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.8e-73 282.0 245 62.9
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-71 275.8 248 59.7
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.2e-71 275.0 193 69.4
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 4.3e-67 260.8 145 91.0
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 1.4e-57 229.2 150 78.0
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 6.9e-57 226.9 204 60.8
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.2e-56 226.1 146 74.7
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.5e-56 224.2 205 59.5
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.0e-49 201.1 131 74.0
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-47 196.1 131 72.5
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 1.7e-47 195.7 104 93.3
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 2.7e-45 188.3 214 52.8
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 6.0e-45 187.2 154 66.9
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 1.1e-43 183.0 161 60.9
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 5.6e-43 180.6 98 90.8
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.6e-43 179.9 130 68.5
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 1.3e-36 159.5 122 68.9
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.9e-36 157.9 109 70.6
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.3e-27 127.9 85 70.6
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 4.3e-27 127.9 225 41.3
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 2.4e-25 122.1 85 65.9
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 1.1e-22 113.2 139 48.2
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.3e-20 105.5 187 36.9
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 5.0e-15 87.8 42 95.2
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 5.0e-07 61.2 45 66.7


User provided reference genes

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