Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.6e-128 463.0 270 100.0
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 1.8e-108 396.4 258 89.5
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 6.4e-106 387.9 261 85.8
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 6.4e-106 387.9 261 87.0
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 8.4e-106 387.5 261 86.6
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 8.4e-106 387.5 261 85.1
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 1.1e-105 387.1 261 88.1
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.4e-105 386.7 261 87.0
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.9e-105 386.3 259 86.9
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.9e-105 386.3 260 87.7
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 1.9e-105 386.3 261 86.6
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.4e-105 386.0 261 83.9
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.2e-105 385.6 261 87.0
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 5.4e-105 384.8 256 87.1
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 5.4e-105 384.8 261 85.8
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 5.4e-105 384.8 261 85.4
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 7.1e-105 384.4 261 86.6
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 7.1e-105 384.4 261 85.4
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 9.3e-105 384.0 261 85.8
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 9.3e-105 384.0 261 86.6
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.2e-104 383.6 263 85.6
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 1.6e-104 383.3 261 85.8
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 2.1e-104 382.9 261 85.8
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 2.1e-104 382.9 261 85.8
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 2.7e-104 382.5 261 86.2
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 2.7e-104 382.5 256 87.5
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 2.7e-104 382.5 260 84.2
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 3.5e-104 382.1 261 86.2
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 3.5e-104 382.1 261 86.2
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.5e-104 382.1 261 86.6
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.5e-104 382.1 261 84.7
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 3.5e-104 382.1 261 84.3
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.6e-104 381.7 264 85.6
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 4.6e-104 381.7 264 83.7
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 6.0e-104 381.3 261 84.3
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 6.0e-104 381.3 261 85.8
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 7.9e-104 380.9 261 85.8
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 7.9e-104 380.9 261 85.8
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 7.9e-104 380.9 261 84.7
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.0e-103 380.6 261 85.1
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.3e-103 380.2 260 77.3
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.8e-103 379.8 274 80.3
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.8e-103 379.8 266 84.6
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.8e-103 379.8 261 84.3
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 3.0e-103 379.0 257 85.6
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 3.0e-103 379.0 261 84.7
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.9e-103 378.6 256 87.1
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 8.7e-103 377.5 261 83.9
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 8.7e-103 377.5 261 85.1
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.5e-102 376.7 260 85.0
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 1.5e-102 376.7 269 84.0
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 1.9e-102 376.3 261 84.3
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 3.3e-102 375.6 256 85.5
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.3e-102 375.2 260 84.6
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 5.6e-102 374.8 265 83.4
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 7.4e-102 374.4 257 84.4
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 9.6e-102 374.0 261 84.7
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 9.6e-102 374.0 269 82.2
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 1.3e-101 373.6 265 83.4
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.3e-101 373.6 261 82.8
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.6e-101 373.2 263 83.3
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 2.1e-101 372.9 263 82.5
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 2.8e-101 372.5 296 77.0
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 2.8e-101 372.5 275 77.8
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 3.7e-101 372.1 256 82.8
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 4.8e-101 371.7 261 82.8
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.8e-101 371.7 256 84.4
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 8.1e-101 370.9 256 84.8
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 1.1e-100 370.5 261 82.8
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.8e-100 369.8 261 83.5
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 2.4e-100 369.4 255 85.1
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 4.0e-100 368.6 260 82.7
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.0e-100 368.6 260 82.7
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 5.3e-100 368.2 261 83.9
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 5.3e-100 368.2 262 82.8
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 9.0e-100 367.5 260 82.3
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 9.0e-100 367.5 262 82.1
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 9.0e-100 367.5 261 81.2
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.2e-99 367.1 262 82.1
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.2e-99 367.1 258 85.3
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.2e-99 367.1 260 82.7
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.2e-99 367.1 261 83.9
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 1.2e-99 367.1 260 82.7
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 1.2e-99 367.1 261 81.6
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 2.0e-99 366.3 262 84.0
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 2.0e-99 366.3 263 83.3
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.6e-99 365.9 260 81.9
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 3.4e-99 365.5 256 82.8
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 4.5e-99 365.2 262 82.8
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 5.8e-99 364.8 262 82.4
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 7.6e-99 364.4 262 81.7
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.7e-98 363.2 256 84.4
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.7e-98 363.2 262 82.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.2e-98 362.8 261 80.5
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.9e-98 362.5 262 82.4
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 3.8e-98 362.1 262 82.1
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 3.8e-98 362.1 262 82.1
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 3.8e-98 362.1 262 82.1
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 3.8e-98 362.1 262 82.1
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 3.8e-98 362.1 262 82.1
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 3.8e-98 362.1 257 82.1
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 6.5e-98 361.3 262 81.3
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 6.5e-98 361.3 256 82.8
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 8.4e-98 360.9 261 81.6
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 1.1e-97 360.5 262 80.5
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.9e-97 359.8 262 81.7
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 7.1e-97 357.8 262 80.5
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 7.1e-97 357.8 262 80.5
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 7.1e-97 357.8 262 81.3
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 9.3e-97 357.5 260 81.2
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 9.3e-97 357.5 250 83.2
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 1.2e-96 357.1 253 82.6
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.2e-96 357.1 262 80.5
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 1.6e-96 356.7 259 81.5
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.6e-96 356.7 262 80.5
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.6e-96 356.7 262 80.5
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 1.6e-96 356.7 262 79.8
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.1e-96 356.3 262 79.8
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.7e-96 355.9 255 82.4
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 2.7e-96 355.9 255 81.6
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 3.5e-96 355.5 262 81.3
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 3.5e-96 355.5 238 86.6
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 4.6e-96 355.1 262 80.2
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 7.9e-96 354.4 259 80.7
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 7.9e-96 354.4 259 80.7
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.3e-95 353.6 252 82.1
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-95 353.6 252 82.1
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.3e-95 353.6 252 82.1
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 5.1e-95 351.7 255 80.8
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.3e-94 349.0 254 74.8
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 3.3e-94 349.0 254 78.0
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 5.7e-94 348.2 263 76.8
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 2.8e-93 345.9 256 78.5
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.7e-93 345.5 228 90.4
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 4.1e-92 342.0 235 87.2
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 6.9e-92 341.3 261 76.2
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 9.0e-92 340.9 261 77.8
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.5e-91 340.1 235 86.4
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.8e-91 338.2 231 86.1
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 6.5e-90 334.7 242 84.3
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.9e-89 333.2 237 83.1
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 3.0e-87 325.9 254 69.7
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 5.1e-87 325.1 231 82.3
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 2.5e-86 322.8 231 83.1
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.6e-85 320.1 251 72.1
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.0e-82 310.8 261 65.1
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.8e-79 300.1 257 74.3
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 5.1e-79 298.5 252 61.1
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.7e-78 295.0 251 67.3
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 6.3e-77 291.6 250 59.2
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.2e-75 287.3 237 77.2
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.7e-74 283.5 294 65.6
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.9e-74 282.7 261 68.6
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.9e-74 282.7 261 68.6
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.0e-70 270.0 234 65.0
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 3.5e-67 259.2 187 86.6
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.7e-66 256.9 191 82.2
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 5.3e-60 235.3 190 79.5
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 1.6e-59 233.8 178 86.5
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 4.5e-59 232.3 262 47.3
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 8.5e-58 228.0 168 89.3
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 7.2e-57 224.9 149 75.8
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.0e-55 219.5 125 85.6
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 3.4e-54 216.1 260 50.4
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 1.7e-50 203.8 149 71.1
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.4e-46 189.1 124 75.0
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 7.5e-38 161.8 149 74.5
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 2.3e-34 150.2 127 83.5
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.6e-32 144.1 85 88.2
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 4.7e-32 142.5 85 83.5
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.4e-31 141.0 264 39.4
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 8.3e-29 131.7 85 80.0
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 5.4e-28 129.0 84 77.4
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 7.8e-27 125.2 108 71.3
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.7e-21 107.5 73 78.1
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.8e-15 87.4 107 67.3
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.6e-14 83.6 83 77.1
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 3.7e-13 79.7 118 57.6
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 6.4e-13 79.0 136 42.6
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 3.2e-12 76.6 85 72.9
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 3.0e-10 70.1 93 43.0
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 5.2e-07 59.3 36 83.3


User provided reference genes

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