Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P650T7 Lonicera japonica HOM05D000123 ORTHO05D000064 2.2e-49 198.7 105 100.0
Potri.018G079901 Populus trichocarpa HOM05D000123 ORTHO05D000064 1.5e-21 106.3 88 65.9
Sabra18G0067800 Salix brachista HOM05D000123 ORTHO05D000064 1.6e-20 102.8 99 57.6
Cfa003257 Carpinus fangiana HOM05D000123 ORTHO05D000064 8.0e-20 100.5 127 51.2
COL.COLO4_34926 Corchorus olitorius HOM05D000123 ORTHO05D000064 1.8e-19 99.4 89 65.2
Thecc.09G110500 Theobroma cacao HOM05D000123 ORTHO05D000064 3.0e-19 98.6 81 69.1
Gohir.D06G060900 Gossypium hirsutum HOM05D000123 ORTHO05D000064 8.8e-19 97.1 69 75.4
Gorai.010G070900 Gossypium raimondii HOM05D000123 ORTHO05D000064 8.8e-19 97.1 69 75.4
Dinv36632 Davidia involucrata HOM05D000123 ORTHO05D000064 2.0e-18 95.9 64 78.1
Gohir.A06G062600 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.0e-18 95.9 69 73.9
Duzib150G0657 Durio zibethinus HOM05D000123 ORTHO05D000064 1.3e-17 93.2 69 71.0
Manes.16G116200 Manihot esculenta HOM05D000123 ORTHO05D000064 2.2e-17 92.4 124 47.6
Gohir.D05G024600 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.8e-17 92.0 70 70.0
Gorai.009G024700 Gossypium raimondii HOM05D000123 ORTHO05D000064 2.8e-17 92.0 70 70.0
Prupe.7G231100 Prunus persica HOM05D000123 ORTHO05D000064 2.8e-17 92.0 130 46.2
FvH4_1g04810 Fragaria vesca HOM05D000123 ORTHO05D000064 3.7e-17 91.7 136 45.6
FAN19G0779 Fragaria x ananassa HOM05D000123 ORTHO05D000064 3.7e-17 91.7 136 45.6
Hma1.2p1_0018F.1_g013540 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 4.8e-17 91.3 66 68.2
Gohir.A05G023100 Gossypium hirsutum HOM05D000123 ORTHO05D000064 6.3e-17 90.9 67 68.7
Atru.chr7.1350 Acer truncatum HOM05D000123 ORTHO05D000064 1.1e-16 90.1 57 78.9
Aqoxy7G01673 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 1.1e-16 90.1 79 59.5
Dinv41603 Davidia involucrata HOM05D000123 ORTHO05D000064 1.4e-16 89.7 67 73.1
Phvul.004G163300 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 2.4e-16 89.0 70 68.6
Nitab4.5_0002904g0100 Nicotiana tabacum HOM05D000123 ORTHO05D000064 3.1e-16 88.6 129 49.6
A07p07800 Brassica napus HOM05D000123 ORTHO05D000064 4.1e-16 88.2 66 63.6
BraA07t28571Z Brassica rapa HOM05D000123 ORTHO05D000064 4.1e-16 88.2 66 63.6
CSS0030667 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 4.1e-16 88.2 135 45.9
VMungo0464G0995 Vigna mungo HOM05D000123 ORTHO05D000064 4.1e-16 88.2 81 60.5
DCAR_006741 Daucus carota HOM05D001502 ORTHO05D002066 5.4e-16 87.8 123 47.2
BcaB03g14579 Brassica carinata HOM05D000123 ORTHO05D000064 7.0e-16 87.4 66 65.2
BcaC06g35718 Brassica carinata HOM05D000123 ORTHO05D000064 7.0e-16 87.4 108 48.1
C07p11710 Brassica napus HOM05D000123 ORTHO05D000064 7.0e-16 87.4 108 48.1
BolC7t41645H Brassica oleracea HOM05D000123 ORTHO05D000064 7.0e-16 87.4 108 48.1
Solyc12g007070.2 Solanum lycopersicum HOM05D000123 ORTHO05D000064 7.0e-16 87.4 128 48.4
MSTRG.13518 Avicennia marina HOM05D000123 ORTHO05D000064 9.1e-16 87.0 83 57.8
Haze_25715 Corylus avellana HOM05D000123 ORTHO05D000064 9.1e-16 87.0 65 70.8
A03p43780 Brassica napus HOM05D000123 ORTHO05D000064 1.2e-15 86.7 75 64.0
BraA03t13513Z Brassica rapa HOM05D000123 ORTHO05D000064 1.2e-15 86.7 75 64.0
CSS0022518 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 1.2e-15 86.7 139 44.6
Sp3g22310 Schrenkiella parvula HOM05D000123 ORTHO05D000064 1.2e-15 86.7 66 63.6
SpUn0226_0010 Schrenkiella parvula HOM05D000123 ORTHO05D000064 1.2e-15 86.7 66 63.6
FAN28G0001 Fragaria x ananassa HOM05D000123 ORTHO05D000064 2.0e-15 85.9 136 42.6
Hma1.2p1_0518F.1_g171110 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 2.0e-15 85.9 77 62.3
Sopen12g003060 Solanum pennellii HOM05D000123 ORTHO05D000064 2.0e-15 85.9 86 59.3
CARHR100660 Cardamine hirsuta HOM05D000123 ORTHO05D000064 2.7e-15 85.5 112 49.1
arahy.Tifrunner.gnm1.ann1.PK48VF Arachis hypogaea HOM05D000123 ORTHO05D000064 4.5e-15 84.7 69 66.7
arahy.Tifrunner.gnm1.ann1.42KS26 Arachis hypogaea HOM05D000123 ORTHO05D000064 5.9e-15 84.3 69 65.2
Cpa.g.sc1780.1 Carica papaya HOM05D000123 ORTHO05D000064 5.9e-15 84.3 67 64.2
DCAR_012077 Daucus carota HOM05D000123 ORTHO05D000064 5.9e-15 84.3 125 43.2
AL3G40060 Arabidopsis lyrata HOM05D000123 ORTHO05D000064 7.7e-15 84.0 115 46.1
RcHm_v2.0_Chr2g0090441 Rosa chinensis HOM05D000123 ORTHO05D000064 1.0e-14 83.6 92 53.3
PGSC0003DMG400000380 Solanum tuberosum HOM05D000123 ORTHO05D000064 1.0e-14 83.6 86 57.0
BcaB06g26653 Brassica carinata HOM05D000123 ORTHO05D000064 1.3e-14 83.2 63 63.5
CiPaw.03G232100 Carya illinoinensis HOM05D000123 ORTHO05D000064 1.3e-14 83.2 57 71.9
CiPaw.04G164100 Carya illinoinensis HOM05D000123 ORTHO05D000064 1.7e-14 82.8 122 46.7
Ciclev10008768m.g Citrus clementina HOM05D000123 ORTHO05D000064 1.7e-14 82.8 56 69.6
BcaC01g03278 Brassica carinata HOM05D000123 ORTHO05D000064 2.2e-14 82.4 110 48.2
Eucgr.C01043 Eucalyptus grandis HOM05D000123 ORTHO05D000064 2.2e-14 82.4 73 57.5
Nn2g11743 Nelumbo nucifera HOM05D000123 ORTHO05D000064 2.2e-14 82.4 82 51.2
Nn8g39183 Nelumbo nucifera HOM05D000123 ORTHO05D000064 2.2e-14 82.4 70 60.0
Oeu042055.1 Olea europaea HOM05D000123 ORTHO05D000064 2.2e-14 82.4 62 69.4
Sed0023721 Sechium edule HOM05D000123 ORTHO05D000064 2.2e-14 82.4 82 53.7
Aa31sc29G90 Aethionema arabicum HOM05D000123 ORTHO05D000064 2.9e-14 82.0 100 51.0
AT3G24520 Arabidopsis thaliana HOM05D000123 ORTHO05D000064 2.9e-14 82.0 56 71.4
C03p54050 Brassica napus HOM05D000123 ORTHO05D000064 3.8e-14 81.6 111 50.5
BolC3t17698H Brassica oleracea HOM05D000123 ORTHO05D000064 3.8e-14 81.6 111 50.5
MD15G1185400 Malus domestica HOM05D000123 ORTHO05D000064 3.8e-14 81.6 68 63.2
CANSAT56G2728 Cannabis sativa HOM05D000123 ORTHO05D000064 5.0e-14 81.3 64 67.2
Thhalv10002872m.g Eutrema salsugineum HOM05D000123 ORTHO05D000064 5.0e-14 81.3 64 62.5
QL02p085400 Quercus lobata HOM05D000123 ORTHO05D000064 6.5e-14 80.9 65 63.1
MSTRG.828 Avicennia marina HOM05D000123 ORTHO05D000064 1.1e-13 80.1 85 56.5
AUR62010997 Chenopodium quinoa HOM05D000123 ORTHO05D000064 1.5e-13 79.7 57 68.4
Lsat_1_v5_gn_5_103200 Lactuca sativa HOM05D000123 ORTHO05D000064 1.5e-13 79.7 57 70.2
Nitab4.5_0005947g0030 Nicotiana tabacum HOM05D000123 ORTHO05D000064 1.5e-13 79.7 56 75.0
Oeu008041.1 Olea europaea HOM05D000123 ORTHO05D000064 1.5e-13 79.7 86 59.3
Peaxi162Scf00546g00118 Petunia axillaris HOM05D000123 ORTHO05D000064 1.5e-13 79.7 56 73.2
TAR624G1022 Trochodendron aralioides HOM05D000123 ORTHO05D000064 1.5e-13 79.7 86 54.7
Carub.0003s2491 Capsella rubella HOM05D000123 ORTHO05D000064 1.9e-13 79.3 56 67.9
Duzib168G1471 Durio zibethinus HOM05D000123 ORTHO05D000064 1.9e-13 79.3 65 66.2
Glyma.09G190600 Glycine max HOM05D000123 ORTHO05D000064 1.9e-13 79.3 64 67.2
PGR142G2436 Punica granatum HOM05D000123 ORTHO05D000064 1.9e-13 79.3 56 67.9
vmacro20698 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 1.9e-13 79.3 55 74.5
Migut.E00326 Erythranthe guttata HOM05D000123 ORTHO05D000064 2.5e-13 79.0 91 51.6
HanXRQChr12g0355401 Helianthus annuus HOM05D000123 ORTHO05D000064 2.5e-13 79.0 104 49.0
MBI01_g06511_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 2.5e-13 79.0 76 51.3
Ca_03974_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 3.2e-13 78.6 73 57.5
Cc06_g09660 Coffea canephora HOM05D000123 ORTHO05D000064 3.2e-13 78.6 74 59.5
FAN23G2754 Fragaria x ananassa HOM05D000123 ORTHO05D000064 3.2e-13 78.6 130 39.2
FAN26G1545 Fragaria x ananassa HOM05D000123 ORTHO05D000064 3.2e-13 78.6 130 39.2
Lalb_Chr14g0371501 Lupinus albus HOM05D000123 ORTHO05D000064 3.2e-13 78.6 61 67.2
ECA234G2347 Erigeron canadensis HOM05D000123 ORTHO05D000064 4.2e-13 78.2 81 55.6
Lsat_1_v5_gn_7_40921 Lactuca sativa HOM05D000123 ORTHO05D000064 4.2e-13 78.2 83 57.8
Psat1g043120 Pisum sativum HOM05D000123 ORTHO05D000064 4.2e-13 78.2 68 60.3
GSVIVG01015389001 Vitis vinifera HOM05D000123 ORTHO05D000064 4.2e-13 78.2 50 76.0
ClCG11G002480 Citrullus lanatus HOM05D000123 ORTHO05D000064 9.5e-13 77.0 66 62.1
Medtr6g086805 Medicago truncatula HOM05D000123 ORTHO05D000064 9.5e-13 77.0 68 60.3
Ah.14g081990 Amaranthus hybridus HOM05D000123 ORTHO05D000064 1.2e-12 76.6 57 64.9
EL10Ac8g18499 Beta vulgaris HOM05D000123 ORTHO05D000064 1.2e-12 76.6 57 66.7
Sed0019165 Sechium edule HOM05D000123 ORTHO05D000064 1.2e-12 76.6 71 59.2
Hund26183 Selenicereus undatus HOM05D000123 ORTHO05D000064 1.2e-12 76.6 56 66.1
TWI63G1740 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 1.2e-12 76.6 63 65.1
MELO3C025338.2 Cucumis melo HOM05D000123 ORTHO05D000064 2.1e-12 75.9 65 61.5
Glyma.07G086400 Glycine max HOM05D000123 ORTHO05D000064 2.1e-12 75.9 64 67.2
HanXRQChr10g0318591 Helianthus annuus HOM05D000123 ORTHO05D000064 2.1e-12 75.9 72 54.2
ECA240G2075 Erigeron canadensis HOM05D000123 ORTHO05D000064 2.7e-12 75.5 82 54.9
TPR.G13712 Trifolium pratense HOM05D000123 ORTHO05D000064 2.7e-12 75.5 68 57.4
AUR62021507 Chenopodium quinoa HOM05D000123 ORTHO05D000064 3.6e-12 75.1 56 64.3
CsaV3_1G024170 Cucumis sativus L. HOM05D000123 ORTHO05D000064 3.6e-12 75.1 65 61.5
Lj2g0007764 Lotus japonicus HOM05D000123 ORTHO05D000064 3.6e-12 75.1 57 68.4
ClCG06G008540 Citrullus lanatus HOM05D000123 ORTHO05D000064 4.7e-12 74.7 66 57.6
Manes.03G020500 Manihot esculenta HOM05D000123 ORTHO05D000064 4.7e-12 74.7 129 41.1
HanXRQChr03g0061681 Helianthus annuus HOM05D000123 ORTHO05D000064 8.0e-12 73.9 84 56.0
Hund09203 Selenicereus undatus HOM05D000123 ORTHO05D000064 8.0e-12 73.9 55 65.5
Sc18g0001210 Simmondsia chinensis HOM05D000123 ORTHO05D000064 1.0e-11 73.6 56 62.5
CsaV3_2G002270 Cucumis sativus L. HOM05D000123 ORTHO05D000064 1.4e-11 73.2 66 57.6
MD02G1046900 Malus domestica HOM05D000123 ORTHO05D000064 1.4e-11 73.2 56 66.1
Peaxi162Scf00560g00011 Petunia axillaris HOM05D000123 ORTHO05D000064 1.8e-11 72.8 108 45.4
Rhsim01G0094400 Rhododendron simsii HOM05D000123 ORTHO05D000064 1.8e-11 72.8 128 43.0
MELO3C004556.2 Cucumis melo HOM05D000123 ORTHO05D000064 2.3e-11 72.4 67 56.7
Gohir.A08G241300 Gossypium hirsutum HOM05D000123 ORTHO05D000064 3.0e-11 72.0 88 47.7
Gohir.D08G262000 Gossypium hirsutum HOM05D000123 ORTHO05D000064 4.0e-11 71.6 103 44.7
SGA_v2.0_scaffold14G06847 Striga asiatica HOM05D000123 ORTHO05D000064 4.0e-11 71.6 90 50.0
PSO782G3064 Papaver somniferum HOM05D000123 ORTHO05D000064 5.2e-11 71.2 84 46.4
Gorai.004G280100 Gossypium raimondii HOM05D000123 ORTHO05D000064 6.8e-11 70.9 85 48.2
CAN.G1529.11 Capsicum annuum HOM05D000123 ORTHO05D000064 8.8e-11 70.5 69 56.5
FAN23G0779 Fragaria x ananassa HOM05D000123 ORTHO05D000064 8.8e-11 70.5 65 53.8
THA.LOC104808761 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 1.5e-10 69.7 84 51.2
PSO832G4462 Papaver somniferum HOM05D000123 ORTHO05D000064 5.7e-10 67.8 84 44.0
Lsat_1_v5_gn_8_105120 Lactuca sativa HOM05D000123 ORTHO05D000064 7.5e-10 67.4 67 52.2
Oeu041897.1 Olea europaea HOM05D000123 ORTHO05D000064 1.4e-08 63.2 95 45.3
MSTRG.2248 Avicennia marina HOM05D000123 ORTHO05D000064 4.1e-08 61.6 83 45.8
Zm00001eb159390 Zea mays HOM05D000123 ORTHO05D000064 2.7e-07 58.9 68 50.0
SalBow8G1941 Salvia bowleyana HOM05D000123 ORTHO05D000064 5.9e-07 57.8 87 41.4
Atru.chr5.1519 Acer truncatum HOM05D000123 ORTHO05D000064 1.7e-06 56.2 91 39.6
TAR383G0580 Trochodendron aralioides HOM05D000123 ORTHO05D000064 5.0e-06 54.7 56 50.0
Os03g0854500 Oryza sativa ssp. japonica HOM05D000123 ORTHO05D000064 8.6e-06 53.9 86 38.4
Zm00001eb358700 Zea mays HOM05D000123 ORTHO05D000064 8.6e-06 53.9 54 50.0


User provided reference genes

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