Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 8.9e-159 563.5 281 100.0
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 5.2e-151 537.7 275 98.2
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 5.6e-137 491.1 268 89.9
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 4.8e-136 488.0 274 88.3
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.8e-135 486.1 274 87.6
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 2.4e-135 485.7 274 89.1
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.1e-135 485.3 268 89.9
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 4.0e-135 485.0 281 86.8
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 4.0e-135 485.0 281 86.1
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.5e-134 483.0 281 86.8
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 4.5e-134 481.5 268 88.8
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 4.5e-134 481.5 274 87.6
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 5.8e-134 481.1 275 87.6
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 5.8e-134 481.1 274 86.5
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 9.9e-134 480.3 281 86.5
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 9.9e-134 480.3 281 86.8
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 9.9e-134 480.3 276 86.2
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-133 479.6 276 85.5
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.7e-133 479.6 268 89.2
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.7e-133 479.6 268 88.4
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 1.7e-133 479.6 276 87.0
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 1.7e-133 479.6 276 86.6
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 2.2e-133 479.2 281 85.8
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 3.8e-133 478.4 266 88.3
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 3.8e-133 478.4 266 88.3
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 3.8e-133 478.4 274 85.8
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 4.9e-133 478.0 274 85.8
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 4.9e-133 478.0 274 85.8
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 4.9e-133 478.0 268 88.4
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 6.4e-133 477.6 276 85.1
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 6.4e-133 477.6 276 85.5
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 8.4e-133 477.2 279 85.3
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 8.4e-133 477.2 274 86.5
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 8.4e-133 477.2 274 86.1
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 1.1e-132 476.9 273 86.4
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 1.1e-132 476.9 274 85.8
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 1.1e-132 476.9 268 87.7
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 1.4e-132 476.5 277 86.3
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.4e-132 476.5 281 85.4
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.9e-132 476.1 279 84.9
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 2.4e-132 475.7 268 87.7
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.4e-132 475.7 276 85.1
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.4e-132 475.7 268 87.3
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 2.4e-132 475.7 274 85.4
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 3.2e-132 475.3 274 86.5
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 3.2e-132 475.3 274 86.1
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 3.2e-132 475.3 268 87.3
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 3.2e-132 475.3 266 87.6
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 4.2e-132 474.9 276 85.1
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 4.2e-132 474.9 274 85.8
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 4.2e-132 474.9 266 88.0
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 4.2e-132 474.9 274 85.4
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 4.2e-132 474.9 273 86.1
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 4.2e-132 474.9 273 86.1
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 4.2e-132 474.9 273 86.1
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 5.4e-132 474.6 276 85.1
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 7.1e-132 474.2 280 83.9
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 9.3e-132 473.8 274 86.5
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 9.3e-132 473.8 266 86.8
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 9.3e-132 473.8 268 86.9
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.2e-131 473.4 274 86.5
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 1.2e-131 473.4 276 85.9
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 1.2e-131 473.4 268 87.3
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.6e-131 473.0 266 86.8
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 2.1e-131 472.6 268 87.3
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.1e-131 472.6 298 80.9
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 2.7e-131 472.2 280 84.3
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 2.7e-131 472.2 274 85.4
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 2.7e-131 472.2 274 85.8
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 3.5e-131 471.9 266 87.6
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 6.0e-131 471.1 274 85.0
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 7.9e-131 470.7 274 86.1
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 7.9e-131 470.7 266 87.6
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 1.0e-130 470.3 266 86.8
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.3e-130 469.9 274 84.3
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.8e-130 469.5 274 85.0
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.3e-130 469.2 273 84.2
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.3e-130 469.2 273 84.2
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.3e-130 469.2 274 85.4
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 2.3e-130 469.2 282 83.3
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 3.0e-130 468.8 274 84.7
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 5.1e-130 468.0 274 84.7
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 6.7e-130 467.6 274 84.7
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 8.7e-130 467.2 246 95.5
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 8.7e-130 467.2 266 87.2
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.1e-129 466.8 273 83.5
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.1e-129 466.8 268 85.1
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.5e-129 466.5 274 84.7
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 1.5e-129 466.5 282 84.8
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 2.5e-129 465.7 285 84.2
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 3.3e-129 465.3 274 83.6
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 3.3e-129 465.3 268 85.8
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 4.3e-129 464.9 282 84.4
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 4.3e-129 464.9 268 85.4
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 5.6e-129 464.5 273 83.2
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 5.6e-129 464.5 273 83.2
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 7.4e-129 464.2 268 85.1
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 7.4e-129 464.2 289 80.6
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 9.6e-129 463.8 258 87.6
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 3.6e-128 461.8 273 82.4
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 4.8e-128 461.5 275 85.5
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 4.8e-128 461.5 274 82.8
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 4.8e-128 461.5 281 84.7
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 4.8e-128 461.5 281 84.7
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 4.8e-128 461.5 274 85.4
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 8.1e-128 460.7 281 82.2
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 8.1e-128 460.7 268 84.7
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 1.1e-127 460.3 281 84.3
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 1.4e-127 459.9 281 84.0
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.8e-127 459.5 255 89.4
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 5.3e-127 458.0 252 88.1
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 6.9e-127 457.6 288 81.6
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 9.0e-127 457.2 252 88.5
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 1.5e-126 456.4 287 81.5
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 3.4e-126 455.3 286 82.9
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 5.8e-126 454.5 268 84.0
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 4.9e-125 451.4 342 70.5
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 2.1e-123 446.0 274 82.1
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 3.5e-123 445.3 268 83.6
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 6.0e-123 444.5 245 90.2
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 1.8e-122 443.0 282 81.9
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.8e-122 443.0 331 69.8
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 3.9e-122 441.8 274 81.8
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 3.9e-122 441.8 274 81.8
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 2.5e-121 439.1 291 78.0
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.6e-120 436.4 268 82.1
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.2e-120 434.1 245 86.9
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.2e-116 422.2 247 86.2
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 4.2e-116 421.8 246 86.2
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 9.3e-116 420.6 260 77.7
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 2.7e-115 419.1 249 83.9
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 4.6e-115 418.3 268 75.4
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.3e-114 416.0 273 77.7
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 6.3e-112 407.9 273 76.6
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 3.4e-110 402.1 274 72.3
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 1.4e-103 380.2 277 72.2
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 6.9e-103 377.9 268 73.9
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 9.4e-100 367.5 197 89.8
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 1.6e-99 366.7 267 67.8
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 3.0e-98 362.5 373 56.8
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 5.1e-98 361.7 208 85.6
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-91 338.6 277 66.4
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 4.8e-88 328.6 180 88.3
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 1.0e-85 320.9 181 85.6
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 2.7e-83 312.8 292 60.6
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-83 312.0 271 62.4
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 2.5e-76 289.7 268 60.1
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 5.2e-74 282.0 240 65.8
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 4.2e-68 262.3 197 70.6
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-66 256.9 160 76.9
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 2.2e-64 250.0 263 48.3
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-48 197.2 131 74.8
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-48 197.2 131 74.8
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 3.5e-46 189.5 190 57.4
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 4.7e-35 152.5 145 57.9
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 3.2e-31 139.8 129 62.8
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 3.8e-24 116.3 86 67.4
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 4.6e-22 109.4 79 65.8
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 1.0e-21 108.2 91 63.7
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.0e-21 108.2 91 63.7
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 5.6e-20 102.4 72 69.4
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 2.4e-18 97.1 59 81.4
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-14 84.0 46 87.0
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.3e-11 74.7 90 53.3
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.3e-11 74.7 90 53.3
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 4.8e-11 72.8 45 75.6
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 2.9e-08 63.5 33 93.9
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.9e-07 60.8 37 70.3
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 2.4e-07 60.5 34 88.2


User provided reference genes

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