Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A630G46 Lonicera japonica HOM05D007105 ORTHO05D009304 9.7e-186 653.3 318 100.0
Dinv37443 Davidia involucrata HOM05D007105 ORTHO05D009304 3.0e-134 482.3 308 76.3
Oeu031946.1 Olea europaea HOM05D007105 ORTHO05D009304 8.3e-129 464.2 304 75.3
vmacro00108 Vaccinium macrocarpon HOM05D007105 ORTHO05D009304 7.0e-128 461.1 308 72.1
Oeu047792.1 Olea europaea HOM05D007105 ORTHO05D009304 1.6e-127 459.9 304 75.0
Rhsim11G0040200 Rhododendron simsii HOM05D007105 ORTHO05D009304 2.3e-126 456.1 307 71.3
CSS0044734 Camellia sinensis var. sinensis HOM05D007105 ORTHO05D009304 3.0e-126 455.7 310 71.9
CSS0008904 Camellia sinensis var. sinensis HOM05D007105 ORTHO05D009304 8.6e-126 454.1 310 71.6
GSVIVG01036908001 Vitis vinifera HOM05D007105 ORTHO05D004932 3.3e-125 452.2 306 71.2
TAR375G0424 Trochodendron aralioides HOM05D007105 ORTHO05D009304 6.2e-124 448.0 305 70.2
Hma1.2p1_0294F.1_g116480 Hydrangea macrophylla HOM05D007105 ORTHO05D009304 3.4e-122 442.2 305 71.5
QL12p002830 Quercus lobata HOM05D007105 ORTHO05D009304 1.3e-121 440.3 309 68.9
CiPaw.11G077800 Carya illinoinensis HOM05D007105 ORTHO05D009304 4.9e-121 438.3 307 69.4
MD06G1012100 Malus domestica HOM05D007105 ORTHO05D009304 4.1e-120 435.3 308 68.8
COL.COLO4_16732 Corchorus olitorius HOM05D007105 ORTHO05D009304 9.2e-120 434.1 303 69.3
Cfa012630 Carpinus fangiana HOM05D007105 ORTHO05D009304 1.2e-119 433.7 307 69.7
Nn1g09319 Nelumbo nucifera HOM05D007105 ORTHO05D009304 1.6e-119 433.3 303 69.6
RcHm_v2.0_Chr7g0215051 Rosa chinensis HOM05D007105 ORTHO05D009304 1.6e-119 433.3 305 69.8
Migut.A00485 Erythranthe guttata HOM05D007105 ORTHO05D009304 7.8e-119 431.0 304 69.4
FAN08G0498 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.0e-118 430.6 304 69.4
FvH4_5g24670 Fragaria vesca HOM05D007105 ORTHO05D009304 2.3e-118 429.5 304 69.4
FAN13G0608 Fragaria x ananassa HOM05D007105 ORTHO05D009304 3.0e-118 429.1 304 69.4
FAN18G4245 Fragaria x ananassa HOM05D007105 ORTHO05D009304 3.0e-118 429.1 304 69.4
DCAR_000711 Daucus carota HOM05D007105 ORTHO05D009304 6.6e-118 427.9 309 68.3
TWI60G0782 Tripterygium wilfordii HOM05D007105 ORTHO05D009304 6.6e-118 427.9 307 68.7
Prupe.5G014800 Prunus persica HOM05D007105 ORTHO05D009304 1.1e-117 427.2 309 66.3
FAN04G2788 Fragaria x ananassa HOM05D007105 ORTHO05D009304 7.3e-117 424.5 303 69.6
Thecc.03G321700 Theobroma cacao HOM05D007105 ORTHO05D009304 2.1e-116 422.9 303 68.0
Nitab4.5_0006955g0010 Nicotiana tabacum HOM05D007105 ORTHO05D009304 4.7e-116 421.8 307 69.1
Haze_08036 Corylus avellana HOM05D007105 ORTHO05D009304 1.2e-114 417.2 303 69.6
Peaxi162Scf00876g00218 Petunia axillaris HOM05D007105 ORTHO05D009304 1.2e-114 417.2 307 68.1
ECA233G0981 Erigeron canadensis HOM05D007105 ORTHO05D009304 3.4e-114 415.6 307 68.1
MSTRG.11847 Avicennia marina HOM05D007105 ORTHO05D009304 5.8e-114 414.8 306 67.3
Atru.chr6.2143 Acer truncatum HOM05D007105 ORTHO05D009304 1.3e-113 413.7 321 65.1
ClCG11G016210 Citrullus lanatus HOM05D007105 ORTHO05D009304 1.3e-113 413.7 308 66.6
Sopen12g032090 Solanum pennellii HOM05D007105 ORTHO05D009304 1.3e-113 413.7 307 67.1
Cpa.g.sc24.39 Carica papaya HOM05D007105 ORTHO05D009304 1.7e-113 413.3 310 67.1
Duzib068G0877 Durio zibethinus HOM05D007105 ORTHO05D009304 1.7e-113 413.3 303 66.7
Solyc12g096230.2 Solanum lycopersicum HOM05D007105 ORTHO05D009304 1.7e-113 413.3 307 66.8
SGA_v2.0_scaffold89G27361 Striga asiatica HOM05D007105 ORTHO05D009304 1.7e-113 413.3 304 67.1
VMungo1215G3143 Vigna mungo HOM05D007105 ORTHO05D009304 2.2e-113 412.9 304 67.1
PGR042G1426 Punica granatum HOM05D007105 ORTHO05D009304 4.9e-113 411.8 305 66.9
Lalb_Chr05g0215271 Lupinus albus HOM05D007105 ORTHO05D009304 1.1e-112 410.6 304 65.8
CAN.G947.23 Capsicum annuum HOM05D007105 ORTHO05D009304 1.9e-112 409.8 307 66.1
Sed0004381 Sechium edule HOM05D007105 ORTHO05D009304 1.9e-112 409.8 311 64.6
CsaV3_4G037900 Cucumis sativus L. HOM05D007105 ORTHO05D009304 7.1e-112 407.9 309 65.4
Potri.003G106300 Populus trichocarpa HOM05D007105 ORTHO05D009304 9.2e-112 407.5 312 66.0
PGSC0003DMG400029377 Solanum tuberosum HOM05D007105 ORTHO05D009304 9.2e-112 407.5 310 65.8
Gohir.A12G200800 Gossypium hirsutum HOM05D007105 ORTHO05D009304 1.6e-111 406.8 309 66.3
Gohir.D12G203600 Gossypium hirsutum HOM05D007105 ORTHO05D009304 1.6e-111 406.8 305 66.9
MELO3C010538.2 Cucumis melo HOM05D007105 ORTHO05D009304 2.7e-111 406.0 307 65.5
arahy.Tifrunner.gnm1.ann1.C0VXQN Arachis hypogaea HOM05D007105 ORTHO05D009304 7.8e-111 404.4 305 66.2
arahy.Tifrunner.gnm1.ann1.E4PV4B Arachis hypogaea HOM05D007105 ORTHO05D009304 7.8e-111 404.4 305 66.2
Gorai.008G218400 Gossypium raimondii HOM05D007105 ORTHO05D009304 1.0e-110 404.1 303 67.3
Lsat_1_v5_gn_6_17400 Lactuca sativa HOM05D007105 ORTHO05D009304 1.3e-110 403.7 304 66.8
Ciclev10004016m.g Citrus clementina HOM05D007105 ORTHO05D004932 1.7e-110 403.3 305 64.3
CANSAT35G0139 Cannabis sativa HOM05D007105 ORTHO05D009304 1.5e-109 400.2 302 65.2
THA.LOC104798532 Tarenaya hassleriana HOM05D007105 ORTHO05D009304 2.5e-109 399.4 312 65.7
Lj2g0014172 Lotus japonicus HOM05D007105 ORTHO05D009304 1.6e-108 396.7 307 65.8
SalBow4G3195 Salvia bowleyana HOM05D007105 ORTHO05D009304 4.7e-108 395.2 330 60.9
Hund11072 Selenicereus undatus HOM05D007105 ORTHO05D009304 6.2e-108 394.8 312 65.4
TPR.G28495 Trifolium pratense HOM05D007105 ORTHO05D009304 8.1e-108 394.4 307 64.5
PSO063G0027 Papaver somniferum HOM05D007105 ORTHO05D009304 1.8e-107 393.3 301 63.1
BcaB04g18148 Brassica carinata HOM05D007105 ORTHO05D009304 3.1e-107 392.5 306 65.0
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 4.0e-107 392.1 311 64.6
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 4.0e-107 392.1 311 64.6
Sc22g0002220 Simmondsia chinensis HOM05D007105 ORTHO05D009304 9.0e-107 391.0 306 65.0
ATR0568G201 Amborella trichopoda HOM05D007105 ORTHO05D009304 1.5e-106 390.2 308 63.0
Medtr5g026030 Medicago truncatula HOM05D007105 ORTHO05D009304 2.0e-106 389.8 306 64.1
Ca_25062_v3 Cicer arietinum L. HOM05D007105 ORTHO05D009304 2.6e-106 389.4 310 62.3
Psat2g144520 Pisum sativum HOM05D007105 ORTHO05D009304 4.4e-106 388.7 308 63.6
Sabra03G0073100 Salix brachista HOM05D007105 ORTHO05D009304 4.4e-106 388.7 351 59.0
AL1G49460 Arabidopsis lyrata HOM05D007105 ORTHO05D009304 1.7e-105 386.7 311 63.3
AUR62010501 Chenopodium quinoa HOM05D007105 ORTHO05D009304 4.9e-105 385.2 313 63.6
BraA08t33052Z Brassica rapa HOM05D007105 ORTHO05D009304 6.4e-105 384.8 308 64.3
A08p10520 Brassica napus HOM05D007105 ORTHO05D006179 9.3e-104 380.9 308 63.6
Aa31LG2G14440 Aethionema arabicum HOM05D007105 ORTHO05D009304 3.5e-103 379.0 308 64.3
CDE12G0320 Ceratophyllum demersum HOM05D007105 ORTHO05D009304 4.6e-103 378.6 312 60.3
unitig_748.g8154 Utricularia gibba HOM05D007105 ORTHO05D009304 4.6e-103 378.6 304 61.2
Sp1g27320 Schrenkiella parvula HOM05D007105 ORTHO05D009304 1.3e-102 377.1 308 63.3
Actinidia01236 Actinidia chinensis HOM05D007105 ORTHO05D004932 3.0e-102 375.9 266 68.8
Thhalv10006757m.g Eutrema salsugineum HOM05D007105 ORTHO05D004932 3.9e-102 375.6 306 63.1
Carub.0001s2995 Capsella rubella HOM05D007105 ORTHO05D009304 3.3e-101 372.5 308 62.3
AT1G31600 Arabidopsis thaliana HOM05D007105 ORTHO05D009304 1.6e-100 370.2 314 61.1
CARHR286980 Cardamine hirsuta HOM05D007105 ORTHO05D009304 1.6e-100 370.2 308 61.4
FAN13G0641 Fragaria x ananassa HOM05D007105 ORTHO05D009304 3.6e-100 369.0 302 62.3
Manes.17G002300 Manihot esculenta HOM05D007105 ORTHO05D009304 1.1e-99 367.5 306 60.5
Nitab4.5_0001159g0020 Nicotiana tabacum HOM05D007105 ORTHO05D009304 6.9e-99 364.8 307 62.2
EL10Ac5g12602 Beta vulgaris HOM05D007105 ORTHO05D009304 9.9e-98 360.9 314 61.1
TPR.G38782 Trifolium pratense HOM05D007105 ORTHO05D009304 1.7e-97 360.1 295 62.4
Phvul.002G123600 Phaseolus vulgaris HOM05D007105 ORTHO05D009304 1.9e-96 356.7 259 66.4
HPP92_014403 Vanilla planifolia HOM05D007105 ORTHO05D009304 2.4e-96 356.3 304 57.9
Os04g0602700 Oryza sativa ssp. japonica HOM05D007105 ORTHO05D009304 2.5e-93 346.3 305 57.7
Aqoxy3G04039 Aquilegia oxysepala HOM05D007105 ORTHO05D009304 5.6e-93 345.1 296 60.5
Glyma.09G217100 Glycine max HOM05D007105 ORTHO05D009304 2.8e-92 342.8 304 58.6
Zm00001eb071740 Zea mays HOM05D007105 ORTHO05D009304 5.3e-91 338.6 309 56.6
AUR62017399 Chenopodium quinoa HOM05D007105 ORTHO05D009304 6.9e-91 338.2 262 65.3
Mapoly0189s0001 Marchantia polymorpha HOM05D005261 ORTHO05D006180 9.6e-85 317.8 302 53.3
Ah.02g116320 Amaranthus hybridus HOM05D007105 ORTHO05D009304 1.0e-78 297.7 311 54.7
Pp3c8_16200 Physcomitrium patens HOM05D005261 ORTHO05D006180 1.6e-76 290.4 311 50.2
SMO361G0725 Selaginella moellendorffii HOM05D007105 ORTHO05D009304 3.4e-74 282.7 293 52.2
Eucgr.E01168 Eucalyptus grandis HOM05D000346 ORTHO05D004932 8.5e-73 278.1 212 65.6
HanXRQChr07g0198471 Helianthus annuus HOM05D007105 ORTHO05D009304 4.3e-69 265.8 209 61.2
MBI04_g30794_MAGBIO Magnolia biondii HOM05D007105 ORTHO05D009304 1.0e-62 244.6 171 69.6
SEGI_34316 Sequoiadendron giganteum HOM05D007105 ORTHO05D009304 1.1e-59 234.6 207 57.5
AagrBONN_evm.TU.Sc2ySwM_344.1706 Anthoceros agrestis HOM05D007105 ORTHO05D009304 2.6e-50 203.4 178 59.0
MCO02G439 Micromonas commoda HOM05D007105 ORTHO05D009304 1.7e-49 200.7 292 43.5
CBR_g37166 Chara braunii HOM05D006810 ORTHO05D008501 9.8e-37 158.3 205 41.5
PRCOL_00005291 Prasinoderma coloniale HOM05D005261 ORTHO05D006180 2.3e-33 147.1 287 33.4
TPR.G35893 Trifolium pratense HOM05D007105 ORTHO05D009304 1.9e-32 144.1 128 60.9
Cre04.g224002 Chlamydomonas reinhardtii HOM05D005261 ORTHO05D006180 2.8e-31 140.2 300 32.7
HanXRQChr14g0444821 Helianthus annuus HOM05D007105 ORTHO05D009304 1.3e-20 104.8 106 52.8
CBR_g58096 Chara braunii HOM05D007105 ORTHO05D009304 6.2e-15 85.9 194 33.0
Eucgr.H01159 Eucalyptus grandis HOM05D006806 ORTHO05D008448 4.1e-11 73.2 203 27.6
GSVIVG01027979001 Vitis vinifera HOM05D006806 ORTHO05D008448 4.1e-11 73.2 209 27.3
Aqoxy5G00723 Aquilegia oxysepala HOM05D006806 ORTHO05D008448 3.5e-10 70.1 201 29.4
Glyma.01G151951 Glycine max HOM05D007105 ORTHO05D009304 3.0e-09 67.0 99 40.4
DCAR_002818 Daucus carota HOM05D006806 ORTHO05D008448 3.3e-08 63.5 191 26.2
Hma1.2p1_0209F.1_g088560 Hydrangea macrophylla HOM05D006806 ORTHO05D008448 4.3e-08 63.2 208 24.0
Cpa.g.sc9.212 Carica papaya HOM05D006806 ORTHO05D008448 5.6e-08 62.8 196 26.5
FvH4_2g25440 Fragaria vesca HOM05D006806 ORTHO05D008448 7.3e-08 62.4 194 27.3
TWI59G0641 Tripterygium wilfordii HOM05D006806 ORTHO05D008448 7.3e-08 62.4 204 26.5
ClCG10G010640 Citrullus lanatus HOM05D006806 ORTHO05D008448 1.6e-07 61.2 201 27.4
BcaB01g02036 Brassica carinata HOM05D006806 ORTHO05D008448 2.1e-07 60.8 200 25.5
Lsat_1_v5_gn_9_1100 Lactuca sativa HOM05D006806 ORTHO05D008448 2.1e-07 60.8 209 26.3
Ciclev10021759m.g Citrus clementina HOM05D006806 ORTHO05D008448 2.8e-07 60.5 201 26.9
CSS0020680 Camellia sinensis var. sinensis HOM05D006806 ORTHO05D008448 3.6e-07 60.1 240 24.6
BcaNung04058 Brassica carinata HOM05D006806 ORTHO05D008448 4.7e-07 59.7 200 25.0
A09p01940 Brassica napus HOM05D006806 ORTHO05D008448 4.7e-07 59.7 200 24.5
BolC9t53133H Brassica oleracea HOM05D006806 ORTHO05D008448 4.7e-07 59.7 200 25.0
MD11G1304900 Malus domestica HOM05D006806 ORTHO05D008448 8.1e-07 58.9 210 23.8
Os11g0657200 Oryza sativa ssp. japonica HOM05D006806 ORTHO05D008448 8.1e-07 58.9 198 25.3
CiPaw.07G106700 Carya illinoinensis HOM05D006806 ORTHO05D008448 1.1e-06 58.5 201 26.4
FAN24G3039 Fragaria x ananassa HOM05D006806 ORTHO05D008448 1.1e-06 58.5 194 26.3
Manes.05G063800 Manihot esculenta HOM05D006806 ORTHO05D008448 1.1e-06 58.5 234 25.2
COL.COLO4_23371 Corchorus olitorius HOM05D006806 ORTHO05D008448 1.4e-06 58.2 201 25.9
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 1.4e-06 58.2 177 29.9
Actinidia24336 Actinidia chinensis HOM05D006806 ORTHO05D008448 1.8e-06 57.8 196 25.0
C09p02030 Brassica napus HOM05D006806 ORTHO05D008448 1.8e-06 57.8 200 24.5
BraA09t35844Z Brassica rapa HOM05D006806 ORTHO05D008448 1.8e-06 57.8 200 24.5
MELO3C017969.2 Cucumis melo HOM05D006806 ORTHO05D008448 1.8e-06 57.8 105 37.1
Prupe.8G258600 Prunus persica HOM05D006806 ORTHO05D008448 1.8e-06 57.8 191 25.7
TAR365G0408 Trochodendron aralioides HOM05D006806 ORTHO05D008448 2.3e-06 57.4 215 22.3
RcHm_v2.0_Chr6g0293671 Rosa chinensis HOM05D006806 ORTHO05D008448 3.1e-06 57.0 202 25.7
Sp6g02400 Schrenkiella parvula HOM05D006806 ORTHO05D008448 3.1e-06 57.0 201 23.9
Haze_04900 Corylus avellana HOM05D006806 ORTHO05D008448 5.2e-06 56.2 209 24.9
FAN15G0699 Fragaria x ananassa HOM05D006806 ORTHO05D008448 5.2e-06 56.2 191 27.2
CANSAT25G0048 Cannabis sativa HOM05D006806 ORTHO05D008448 6.8e-06 55.8 98 35.7
QL12p027175 Quercus lobata HOM05D006806 ORTHO05D008448 6.8e-06 55.8 214 24.3
AL6G50560 Arabidopsis lyrata HOM05D006806 ORTHO05D008448 8.9e-06 55.5 217 24.4
Thecc.01G297500 Theobroma cacao HOM05D006806 ORTHO05D008448 8.9e-06 55.5 212 24.5


User provided reference genes

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