Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A267T37 Lonicera japonica HOM05D000688 ORTHO05D005697 1.6e-24 115.2 54 100.0
MSTRG.23938 Avicennia marina HOM05D000688 ORTHO05D005697 2.8e-08 61.2 28 92.9
DCAR_019382 Daucus carota HOM05D000688 ORTHO05D005697 2.8e-08 61.2 27 100.0
Peaxi162Scf00058g00317 Petunia axillaris HOM05D000688 ORTHO05D005697 2.8e-08 61.2 28 92.9
Dinv32011 Davidia involucrata HOM05D000688 ORTHO05D005697 4.7e-08 60.5 28 92.9
GSVIVG01036642001 Vitis vinifera HOM05D000688 ORTHO05D005697 4.7e-08 60.5 28 92.9
EL10Ac2g02765 Beta vulgaris HOM05D000688 ORTHO05D005697 6.1e-08 60.1 28 89.3
CSS0007151 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D005697 8.0e-08 59.7 28 89.3
CSS0026386 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D005697 8.0e-08 59.7 28 89.3
Eucgr.G03213 Eucalyptus grandis HOM05D000688 ORTHO05D005697 8.0e-08 59.7 28 89.3
Nitab4.5_0001542g0120 Nicotiana tabacum HOM05D000688 ORTHO05D005697 8.0e-08 59.7 28 89.3
Rhsim07G0068800 Rhododendron simsii HOM05D000688 ORTHO05D005697 8.0e-08 59.7 28 89.3
vmacro13766 Vaccinium macrocarpon HOM05D000688 ORTHO05D005697 8.0e-08 59.7 28 89.3
Cpa.g.sc169.38 Carica papaya HOM05D000688 ORTHO05D005697 1.0e-07 59.3 28 89.3
ClCG08G010800 Citrullus lanatus HOM05D000688 ORTHO05D005697 1.0e-07 59.3 28 89.3
MELO3C011383.2 Cucumis melo HOM05D000688 ORTHO05D005697 1.0e-07 59.3 28 89.3
CsaV3_6G035750 Cucumis sativus L. HOM05D000688 ORTHO05D005697 1.0e-07 59.3 28 89.3
SGA_v2.0_scaffold260G45868 Striga asiatica HOM05D000688 ORTHO05D005697 1.0e-07 59.3 28 89.3
Migut.B01339 Erythranthe guttata HOM05D000688 ORTHO05D005697 1.4e-07 58.9 28 89.3
Nn1g02628 Nelumbo nucifera HOM05D000688 ORTHO05D005697 1.4e-07 58.9 28 89.3
CAN.G1393.16 Capsicum annuum HOM05D000688 ORTHO05D005697 1.8e-07 58.5 28 85.7
Solyc01g086710.4 Solanum lycopersicum HOM05D000688 ORTHO05D005697 1.8e-07 58.5 28 85.7
Sopen01g033710 Solanum pennellii HOM05D000688 ORTHO05D005697 1.8e-07 58.5 28 85.7
TWI15G1069 Tripterygium wilfordii HOM05D000688 ORTHO05D005697 1.8e-07 58.5 28 89.3
TAR633G0469 Trochodendron aralioides HOM05D000688 ORTHO05D005697 1.8e-07 58.5 28 85.7
Ah.10g030020 Amaranthus hybridus HOM05D000688 ORTHO05D005697 2.3e-07 58.2 28 82.1
THA.LOC104799325 Tarenaya hassleriana HOM05D000688 ORTHO05D005697 2.3e-07 58.2 28 85.7
CANSAT01G0672 Cannabis sativa HOM05D000688 ORTHO05D005697 3.1e-07 57.8 28 82.1
Sc10g0004560 Simmondsia chinensis HOM05D000688 ORTHO05D005697 4.0e-07 57.4 28 82.1
Aa31LG10G7670 Aethionema arabicum HOM05D000688 ORTHO05D005697 5.2e-07 57.0 28 82.1
Carub.0001s2816 Capsella rubella HOM05D000688 ORTHO05D005697 5.2e-07 57.0 28 82.1
CARHR029500 Cardamine hirsuta HOM05D000688 ORTHO05D005697 5.2e-07 57.0 28 82.1
Thhalv10006599m.g Eutrema salsugineum HOM05D000688 ORTHO05D005697 5.2e-07 57.0 28 82.1
Hma1.2p1_1796F.1_g302740 Hydrangea macrophylla HOM05D000688 ORTHO05D005697 5.2e-07 57.0 28 85.7
MD08G1237100 Malus domestica HOM05D000688 ORTHO05D005697 5.2e-07 57.0 28 85.7
Duzib106G0283 Durio zibethinus HOM05D000688 ORTHO05D005697 6.8e-07 56.6 28 85.7
Sed0023837 Sechium edule HOM05D000688 ORTHO05D005697 6.8e-07 56.6 28 82.1
TPR.G8542 Trifolium pratense HOM05D000688 ORTHO05D005697 6.8e-07 56.6 28 82.1
arahy.Tifrunner.gnm1.ann1.078WK3 Arachis hypogaea HOM05D000688 ORTHO05D005697 8.9e-07 56.2 28 82.1
arahy.Tifrunner.gnm1.ann1.91DTPA Arachis hypogaea HOM05D000688 ORTHO05D005697 8.9e-07 56.2 28 82.1
Cc11_g03150 Coffea canephora HOM05D000688 ORTHO05D005697 8.9e-07 56.2 28 82.1
Lalb_Chr03g0032171 Lupinus albus HOM05D000688 ORTHO05D005697 8.9e-07 56.2 28 82.1
Lalb_Chr19g0130451 Lupinus albus HOM05D000688 ORTHO05D005697 8.9e-07 56.2 28 82.1
Sp1g25790 Schrenkiella parvula HOM05D000688 ORTHO05D005697 8.9e-07 56.2 28 78.6
AL1G43780 Arabidopsis lyrata HOM05D000688 ORTHO05D005697 1.2e-06 55.8 27 85.2
AT1G29940 Arabidopsis thaliana HOM05D000688 ORTHO05D005697 1.2e-06 55.8 27 85.2
Oeu030631.3 Olea europaea HOM05D000688 ORTHO05D005697 1.2e-06 55.8 28 82.1
Os10g0495600 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D005697 1.2e-06 55.8 28 78.6
RcHm_v2.0_Chr1g0339591 Rosa chinensis HOM05D000688 ORTHO05D005697 1.2e-06 55.8 28 82.1
Atru.chr12.1270 Acer truncatum HOM05D000688 ORTHO05D005697 1.5e-06 55.5 30 76.7
Cfa010946 Carpinus fangiana HOM05D000688 ORTHO05D005697 1.5e-06 55.5 28 82.1
AUR62015017 Chenopodium quinoa HOM05D000688 ORTHO05D005697 1.5e-06 55.5 33 72.7
Haze_03000 Corylus avellana HOM05D000688 ORTHO05D005697 1.5e-06 55.5 28 82.1
Thhalv10006600m.g Eutrema salsugineum HOM05D000688 ORTHO05D005697 1.5e-06 55.5 28 75.0
Gohir.A10G189000 Gossypium hirsutum HOM05D000688 ORTHO05D005697 1.5e-06 55.5 28 82.1
Gohir.D10G196900 Gossypium hirsutum HOM05D000688 ORTHO05D005697 1.5e-06 55.5 28 82.1
Gorai.011G220100 Gossypium raimondii HOM05D000688 ORTHO05D005697 1.5e-06 55.5 28 82.1
AUR62029096 Chenopodium quinoa HOM05D000688 ORTHO05D005697 2.0e-06 55.1 27 85.2
Prupe.1G574600 Prunus persica HOM05D000688 ORTHO05D005697 2.0e-06 55.1 28 82.1
PGR031G2571 Punica granatum HOM05D000688 ORTHO05D005697 2.0e-06 55.1 28 78.6
Ciclev10024768m.g Citrus clementina HOM05D000688 ORTHO05D005697 2.6e-06 54.7 28 78.6
unitig_8.g3855 Utricularia gibba HOM05D000688 ORTHO05D005697 2.6e-06 54.7 28 78.6
COL.COLO4_20729 Corchorus olitorius HOM05D000688 ORTHO05D005697 3.4e-06 54.3 28 82.1
FvH4_5g25870 Fragaria vesca HOM05D000688 ORTHO05D005697 3.4e-06 54.3 28 78.6
FvH4_7g07420 Fragaria vesca HOM05D000688 ORTHO05D005697 3.4e-06 54.3 28 78.6
FAN01G1757 Fragaria x ananassa HOM05D000688 ORTHO05D005697 3.4e-06 54.3 28 78.6
FAN06G2747 Fragaria x ananassa HOM05D000688 ORTHO05D005697 3.4e-06 54.3 28 78.6
FAN08G1568 Fragaria x ananassa HOM05D000688 ORTHO05D005697 3.4e-06 54.3 28 78.6
FAN10G3028 Fragaria x ananassa HOM05D000688 ORTHO05D005697 3.4e-06 54.3 28 78.6
FAN18G2219 Fragaria x ananassa HOM05D000688 ORTHO05D005697 3.4e-06 54.3 28 78.6
HanXRQChr04g0119011 Helianthus annuus HOM05D000688 ORTHO05D005697 3.4e-06 54.3 27 85.2
MBI06_g17216_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D005697 3.4e-06 54.3 27 85.2
Zm00001eb044710 Zea mays HOM05D000688 ORTHO05D005697 3.4e-06 54.3 28 75.0
BcaB03g13851 Brassica carinata HOM05D000688 ORTHO05D005697 4.4e-06 53.9 28 75.0
BcaC06g35474 Brassica carinata HOM05D000688 ORTHO05D005697 4.4e-06 53.9 28 75.0
A07p10140 Brassica napus HOM05D000688 ORTHO05D005697 4.4e-06 53.9 28 75.0
C07p15670 Brassica napus HOM05D000688 ORTHO05D005697 4.4e-06 53.9 28 75.0
BolC7t42057H Brassica oleracea HOM05D000688 ORTHO05D005697 4.4e-06 53.9 28 75.0
BraA07t28807Z Brassica rapa HOM05D000688 ORTHO05D005697 4.4e-06 53.9 28 75.0
Ca_00571_v3 Cicer arietinum L. HOM05D000688 ORTHO05D005697 4.4e-06 53.9 28 75.0
SHI03904 Sapria himalayana HOM05D000688 ORTHO05D005697 4.4e-06 53.9 28 75.0
Thecc.10G143000 Theobroma cacao HOM05D000688 ORTHO05D005697 4.4e-06 53.9 28 82.1
ECA236G4343 Erigeron canadensis HOM05D000688 ORTHO05D005697 5.8e-06 53.5 27 81.5
Lsat_1_v5_gn_7_31561 Lactuca sativa HOM05D000688 ORTHO05D005697 5.8e-06 53.5 27 81.5
Glyma.13G192600 Glycine max HOM05D000688 ORTHO05D005697 7.5e-06 53.1 28 75.0
Glyma.17G183400 Glycine max HOM05D000688 ORTHO05D005697 7.5e-06 53.1 28 75.0
Lj3g0023740 Lotus japonicus HOM05D000688 ORTHO05D005697 7.5e-06 53.1 28 78.6
Medtr4g124030 Medicago truncatula HOM05D000688 ORTHO05D005697 9.8e-06 52.8 28 75.0
PSO339G3101 Papaver somniferum HOM05D000688 ORTHO05D005697 9.8e-06 52.8 28 75.0
Phvul.011G201300 Phaseolus vulgaris HOM05D000688 ORTHO05D005697 9.8e-06 52.8 28 71.4
VMungo1127G0141 Vigna mungo HOM05D000688 ORTHO05D005697 9.8e-06 52.8 28 71.4


User provided reference genes

Program Settings