Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A123T30 Lonicera japonica HOM05D000725 ORTHO05D003141 2.7e-73 278.5 135 100.0
Lj5A193T102 Lonicera japonica HOM05D000725 ORTHO05D003141 4.1e-45 184.9 136 70.6
Dinv42034 Davidia involucrata HOM05D000725 ORTHO05D003141 9.2e-37 157.1 106 68.9
Dinv23485 Davidia involucrata HOM05D000725 ORTHO05D003141 7.8e-36 154.1 124 62.9
Rhsim11G0180800 Rhododendron simsii HOM05D000725 ORTHO05D003141 2.1e-33 146.0 122 59.8
vmacro17455 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 2.1e-33 146.0 105 61.9
Actinidia27877 Actinidia chinensis HOM05D000725 ORTHO05D003141 4.0e-32 141.7 114 60.5
Oeu041616.1 Olea europaea HOM05D000725 ORTHO05D003141 3.4e-31 138.7 107 65.4
QL11p045293 Quercus lobata HOM05D000725 ORTHO05D003141 5.8e-31 137.9 109 62.4
DCAR_028963 Daucus carota HOM05D000725 ORTHO05D003141 1.7e-30 136.3 99 66.7
Actinidia02233 Actinidia chinensis HOM05D000725 ORTHO05D003141 3.8e-30 135.2 114 59.6
Nitab4.5_0012853g0020 Nicotiana tabacum HOM05D000725 ORTHO05D003141 4.9e-30 134.8 122 58.2
QL11p045305 Quercus lobata HOM05D000725 ORTHO05D003141 8.4e-30 134.0 108 59.3
CiPaw.05G070200 Carya illinoinensis HOM05D000725 ORTHO05D003141 1.1e-29 133.7 116 57.8
Peaxi162Scf00016g00426 Petunia axillaris HOM05D000725 ORTHO05D003141 1.1e-29 133.7 115 58.3
ECA234G1026 Erigeron canadensis HOM05D000725 ORTHO05D003141 1.9e-29 132.9 105 57.1
Cc02_g17200 Coffea canephora HOM05D000725 ORTHO05D003141 3.2e-29 132.1 104 61.5
PGSC0003DMG400030952 Solanum tuberosum HOM05D000725 ORTHO05D003141 1.2e-28 130.2 120 55.8
Nitab4.5_0003234g0070 Nicotiana tabacum HOM05D000725 ORTHO05D003141 2.1e-28 129.4 120 56.7
Sopen01g052160 Solanum pennellii HOM05D000725 ORTHO05D003141 2.1e-28 129.4 115 57.4
CiPaw.06G132300 Carya illinoinensis HOM05D000725 ORTHO05D003141 3.5e-28 128.6 121 52.9
Sc14g0002030 Simmondsia chinensis HOM05D000725 ORTHO05D003141 4.6e-28 128.3 105 59.0
MSTRG.16829 Avicennia marina HOM05D000725 ORTHO05D003141 6.0e-28 127.9 104 61.5
Cc00_g19470 Coffea canephora HOM05D000725 ORTHO05D003141 6.0e-28 127.9 121 52.9
Solyc01g109970.3 Solanum lycopersicum HOM05D000725 ORTHO05D003141 1.0e-27 127.1 115 56.5
Manes.11G082500 Manihot esculenta HOM05D000725 ORTHO05D003141 1.3e-27 126.7 121 52.9
Cpa.g.sc1026.2 Carica papaya HOM05D000725 ORTHO05D003141 1.7e-27 126.3 98 62.2
ECA240G2411 Erigeron canadensis HOM05D000725 ORTHO05D003141 3.9e-27 125.2 114 56.1
Thecc.02G079900 Theobroma cacao HOM05D000725 ORTHO05D003141 6.6e-27 124.4 104 59.6
Rhsim05G0070700 Rhododendron simsii HOM05D000725 ORTHO05D003141 8.7e-27 124.0 97 66.0
Manes.04G086500 Manihot esculenta HOM05D000725 ORTHO05D003141 1.5e-26 123.2 110 59.1
CSS0026816 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 2.5e-26 122.5 118 51.7
CSS0026935 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 2.5e-26 122.5 118 51.7
Ciclev10027795m.g Citrus clementina HOM05D000725 ORTHO05D003141 2.5e-26 122.5 122 54.9
GSVIVG01024225001 Vitis vinifera HOM05D000725 ORTHO05D003141 3.3e-26 122.1 105 57.1
Migut.B00205 Erythranthe guttata HOM05D000725 ORTHO05D003141 4.3e-26 121.7 103 59.2
Eucgr.G01701 Eucalyptus grandis HOM05D000725 ORTHO05D003141 5.6e-26 121.3 111 55.9
Gohir.A12G042200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 5.6e-26 121.3 104 58.7
Gohir.D12G030100 Gossypium hirsutum HOM05D000725 ORTHO05D003141 5.6e-26 121.3 104 58.7
CANSAT11G1287 Cannabis sativa HOM05D000725 ORTHO05D003141 9.6e-26 120.6 107 55.1
Gorai.008G031000 Gossypium raimondii HOM05D000725 ORTHO05D003141 9.6e-26 120.6 104 58.7
Atru.chr5.3086 Acer truncatum HOM05D000725 ORTHO05D003141 1.3e-25 120.2 117 55.6
CAN.G1544.11 Capsicum annuum HOM05D000725 ORTHO05D003141 3.6e-25 118.6 120 53.3
RcHm_v2.0_Chr6g0266061 Rosa chinensis HOM05D000725 ORTHO05D003141 3.6e-25 118.6 121 52.9
Lj5g0003943 Lotus japonicus HOM05D000725 ORTHO05D003141 8.1e-25 117.5 99 56.6
Lj1g0015165 Lotus japonicus HOM05D000725 ORTHO05D003141 1.4e-24 116.7 98 56.1
Lj5g0009315 Lotus japonicus HOM05D000725 ORTHO05D003141 1.4e-24 116.7 98 56.1
Lj5g0015696 Lotus japonicus HOM05D000725 ORTHO05D003141 1.4e-24 116.7 98 56.1
Lj6g0007539 Lotus japonicus HOM05D000725 ORTHO05D003141 1.4e-24 116.7 98 56.1
Potri.009G120700 Populus trichocarpa HOM05D000725 ORTHO05D003141 1.4e-24 116.7 108 53.7
TWI75G0750 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 1.8e-24 116.3 124 51.6
GSVIVG01024512001 Vitis vinifera HOM05D000725 ORTHO05D003141 1.8e-24 116.3 97 58.8
Duzib248G0474 Durio zibethinus HOM05D000725 ORTHO05D003141 3.1e-24 115.5 104 57.7
QL11p045326 Quercus lobata HOM05D000725 ORTHO05D003141 3.1e-24 115.5 112 51.8
Prupe.8G090000 Prunus persica HOM05D000725 ORTHO05D003141 4.0e-24 115.2 105 56.2
TPR.G1890 Trifolium pratense HOM05D000725 ORTHO05D003141 4.0e-24 115.2 96 56.2
HanXRQChr03g0069371 Helianthus annuus HOM05D000725 ORTHO05D003141 5.3e-24 114.8 106 54.7
AUR62011280 Chenopodium quinoa HOM05D000725 ORTHO05D003141 6.9e-24 114.4 106 51.9
CsaV3_2G015070 Cucumis sativus L. HOM05D000725 ORTHO05D003141 6.9e-24 114.4 100 60.0
Glyma.13G201800 Glycine max HOM05D000725 ORTHO05D003141 9.0e-24 114.0 94 58.5
vmacro02076 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 9.0e-24 114.0 129 48.1
FAN24G2419 Fragaria x ananassa HOM05D000725 ORTHO05D003141 2.0e-23 112.8 104 54.8
Aqoxy5G01532 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 2.6e-23 112.5 118 50.8
Aqoxy5G01538 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 2.6e-23 112.5 131 45.8
TWI79G0585 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 2.6e-23 112.5 116 50.9
Sed0009304 Sechium edule HOM05D000725 ORTHO05D003141 3.4e-23 112.1 107 54.2
VMungo1127G0892 Vigna mungo HOM05D000725 ORTHO05D003141 3.4e-23 112.1 117 47.0
Haze_02322 Corylus avellana HOM05D000725 ORTHO05D003141 4.5e-23 111.7 125 54.4
MELO3C023332.2 Cucumis melo HOM05D000725 ORTHO05D003141 5.8e-23 111.3 116 52.6
ClCG11G004110 Citrullus lanatus HOM05D000725 ORTHO05D003141 7.6e-23 110.9 107 53.3
Lj3g0000422 Lotus japonicus HOM05D000725 ORTHO05D003141 7.6e-23 110.9 99 53.5
Hund06249 Selenicereus undatus HOM05D000725 ORTHO05D003141 7.6e-23 110.9 109 51.4
arahy.Tifrunner.gnm1.ann1.XRRC6E Arachis hypogaea HOM05D000725 ORTHO05D003141 2.9e-22 109.0 95 51.6
Lsat_1_v5_gn_5_120421 Lactuca sativa HOM05D000725 ORTHO05D003141 3.8e-22 108.6 100 54.0
Lalb_Chr19g0132271 Lupinus albus HOM05D000725 ORTHO05D003141 3.8e-22 108.6 95 55.8
SGA_v2.0_scaffold58G20498 Striga asiatica HOM05D000725 ORTHO05D003141 3.8e-22 108.6 116 51.7
CANSAT11G1508 Cannabis sativa HOM05D000725 ORTHO05D003141 4.9e-22 108.2 103 55.3
COL.COLO4_15200 Corchorus olitorius HOM05D000725 ORTHO05D003141 4.9e-22 108.2 106 52.8
PSO731G0040 Papaver somniferum HOM05D000725 ORTHO05D003141 4.9e-22 108.2 126 47.6
PSO832G3117 Papaver somniferum HOM05D000725 ORTHO05D003141 4.9e-22 108.2 120 50.8
arahy.Tifrunner.gnm1.ann1.S1J40P Arachis hypogaea HOM05D000725 ORTHO05D003141 6.4e-22 107.8 95 50.5
EL10Ac9g21686 Beta vulgaris HOM05D000725 ORTHO05D003141 6.4e-22 107.8 105 50.5
DCAR_003655 Daucus carota HOM05D000725 ORTHO05D003141 6.4e-22 107.8 116 53.4
PSO210G6882 Papaver somniferum HOM05D000725 ORTHO05D003141 6.4e-22 107.8 113 53.1
TAR625G0592 Trochodendron aralioides HOM05D000725 ORTHO05D003141 8.4e-22 107.5 100 52.0
Ah.01g019080 Amaranthus hybridus HOM05D000725 ORTHO05D003141 1.4e-21 106.7 96 54.2
PSO700G0205 Papaver somniferum HOM05D000725 ORTHO05D003141 1.4e-21 106.7 126 47.6
unitig_21.g20795 Utricularia gibba HOM05D000725 ORTHO05D003141 1.4e-21 106.7 98 53.1
Gorai.013G034700 Gossypium raimondii HOM05D000725 ORTHO05D003141 4.2e-21 105.1 109 54.1
Lalb_Chr01g0008001 Lupinus albus HOM05D000725 ORTHO05D003141 4.2e-21 105.1 91 57.1
VMungo1127G1148 Vigna mungo HOM05D000725 ORTHO05D003141 4.2e-21 105.1 93 53.8
Gohir.D13G030500 Gossypium hirsutum HOM05D000725 ORTHO05D003141 5.4e-21 104.8 109 54.1
Phvul.011G210600 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 5.4e-21 104.8 116 48.3
Rhsim04G0037100 Rhododendron simsii HOM05D000725 ORTHO05D003141 7.1e-21 104.4 103 51.5
Sed0003616 Sechium edule HOM05D000725 ORTHO05D003141 9.3e-21 104.0 107 51.4
Gohir.A13G032200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.2e-20 103.6 108 53.7
Lj6g0012773 Lotus japonicus HOM05D000725 ORTHO05D003141 1.2e-20 103.6 99 50.5
RcHm_v2.0_Chr1g0330471 Rosa chinensis HOM05D000725 ORTHO05D003141 1.6e-20 103.2 113 49.6
Phvul.011G210800 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 2.1e-20 102.8 112 47.3
MD10G1068100 Malus domestica HOM05D000725 ORTHO05D003141 2.7e-20 102.4 106 54.7
Medtr8g037345 Medicago truncatula HOM05D000725 ORTHO05D003141 2.7e-20 102.4 99 52.5
ECA234G2709 Erigeron canadensis HOM05D000725 ORTHO05D003141 6.0e-20 101.3 84 52.4
SHI05568 Sapria himalayana HOM05D000725 ORTHO05D003141 6.0e-20 101.3 107 50.5
Ca_23901_v3 Cicer arietinum L. HOM05D000725 ORTHO05D003141 7.9e-20 100.9 96 52.1
Prupe.8G089900 Prunus persica HOM05D000725 ORTHO05D003141 1.0e-19 100.5 77 57.1
Medtr2g437480 Medicago truncatula HOM05D000725 ORTHO05D003141 1.8e-19 99.8 74 59.5
COL.COLO4_25995 Corchorus olitorius HOM05D000725 ORTHO05D003141 2.3e-19 99.4 106 50.9
PSO782G2318 Papaver somniferum HOM05D000725 ORTHO05D003141 2.3e-19 99.4 126 48.4
Hund06399 Selenicereus undatus HOM05D000725 ORTHO05D003141 2.3e-19 99.4 113 43.4
AL3G52550 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 3.0e-19 99.0 119 42.9
FAN15G1535 Fragaria x ananassa HOM05D000725 ORTHO05D003141 3.0e-19 99.0 72 63.9
AT2G16390 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 3.9e-19 98.6 119 43.7
FAN27G2965 Fragaria x ananassa HOM05D000725 ORTHO05D003141 3.9e-19 98.6 111 49.5
Glyma.12G236100 Glycine max HOM05D000725 ORTHO05D003141 3.9e-19 98.6 94 50.0
PGR042G0782 Punica granatum HOM05D000725 ORTHO05D003141 3.9e-19 98.6 113 48.7
FvH4_2g09760 Fragaria vesca HOM05D000725 ORTHO05D003141 5.1e-19 98.2 111 49.5
Potri.004G159000 Populus trichocarpa HOM05D000725 ORTHO05D003141 5.1e-19 98.2 70 65.7
THA.LOC104819623 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 6.7e-19 97.8 127 43.3
DCAR_001556 Daucus carota HOM05D000725 ORTHO05D003141 8.7e-19 97.4 82 56.1
HanXRQChr12g0374341 Helianthus annuus HOM05D000725 ORTHO05D003141 1.9e-18 96.3 144 36.1
AUR62013100 Chenopodium quinoa HOM05D000725 ORTHO05D003141 3.3e-18 95.5 95 45.3
TPR.G23932 Trifolium pratense HOM05D000725 ORTHO05D003141 3.3e-18 95.5 72 59.7
RcHm_v2.0_Chr6g0266081 Rosa chinensis HOM05D000725 ORTHO05D003141 5.6e-18 94.7 67 61.2
Aa31LG8G13750 Aethionema arabicum HOM05D000725 ORTHO05D003141 1.6e-17 93.2 99 45.5
A03p45780 Brassica napus HOM05D000394 ORTHO05D003141 2.1e-17 92.8 97 47.4
BraA03t13708Z Brassica rapa HOM05D000394 ORTHO05D003141 2.1e-17 92.8 97 47.4
MBI11_g32386_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D003141 2.1e-17 92.8 96 52.1
Carub.0003s3016 Capsella rubella HOM05D000725 ORTHO05D003141 2.8e-17 92.4 117 44.4
COL.COLO4_25997 Corchorus olitorius HOM05D000725 ORTHO05D003141 1.1e-16 90.5 118 41.5
Haze_02328 Corylus avellana HOM05D000725 ORTHO05D003141 1.4e-16 90.1 121 39.7
Psat7g126840 Pisum sativum HOM05D000725 ORTHO05D003141 5.3e-16 88.2 66 57.6
PGR042G3366 Punica granatum HOM05D000725 ORTHO05D003141 5.3e-16 88.2 128 46.1
Ah.01g009440 Amaranthus hybridus HOM05D000725 ORTHO05D003141 6.9e-16 87.8 92 43.5
CDE03G0261 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 2.6e-15 85.9 72 55.6
CARHR106640 Cardamine hirsuta HOM05D000725 ORTHO05D003141 5.8e-15 84.7 97 45.4
CDE06G1623 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 5.8e-15 84.7 90 47.8
Psat4g193880 Pisum sativum HOM05D000725 ORTHO05D003141 9.9e-15 84.0 66 57.6
Sp3g29660 Schrenkiella parvula HOM05D000725 ORTHO05D003141 1.7e-14 83.2 86 44.2
BcaC01g03023 Brassica carinata HOM05D000394 ORTHO05D003141 6.4e-14 81.3 136 35.3
C03p57010 Brassica napus HOM05D000394 ORTHO05D003141 6.4e-14 81.3 136 35.3
BolC3t17979H Brassica oleracea HOM05D000394 ORTHO05D003141 6.4e-14 81.3 136 35.3
Thhalv10022532m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 3.2e-13 79.0 82 46.3
ATR0665G425 Amborella trichopoda HOM05D000725 ORTHO05D003141 4.2e-13 78.6 89 46.1
BcaB08g34646 Brassica carinata HOM05D000725 ORTHO05D003141 5.5e-13 78.2 137 34.3
AUR62016777 Chenopodium quinoa HOM05D000725 ORTHO05D003141 5.5e-13 78.2 55 61.8
EL10Ac9g21454 Beta vulgaris HOM05D000725 ORTHO05D003141 1.2e-12 77.0 117 38.5
HanXRQChr03g0069421 Helianthus annuus HOM05D000725 ORTHO05D003141 3.5e-12 75.5 50 58.0
Os03g0165266 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 7.9e-12 74.3 85 42.4
Lsat_1_v5_gn_9_107821 Lactuca sativa HOM05D000725 ORTHO05D003141 6.7e-11 71.2 56 60.7
TAR381G1393 Trochodendron aralioides HOM05D000725 ORTHO05D003141 8.7e-11 70.9 56 58.9
GSVIVG01023832001 Vitis vinifera HOM05D000725 ORTHO05D003141 1.5e-10 70.1 54 59.3
A04p25600 Brassica napus HOM05D000725 ORTHO05D003141 1.9e-10 69.7 117 38.5
THA.LOC104807870 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 4.3e-10 68.6 124 33.1
Os06g0255700 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 7.4e-10 67.8 75 44.0
Os07g0434500 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 7.4e-10 67.8 75 44.0
CARHR112360 Cardamine hirsuta HOM05D000725 ORTHO05D003141 1.6e-09 66.6 86 38.4
AUR62010106 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.6e-09 66.6 42 57.1
Os08g0289400 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 2.1e-09 66.2 75 42.7
AL4G10630 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 3.7e-09 65.5 90 37.8
BolC4t27758H Brassica oleracea HOM05D000725 ORTHO05D003141 3.7e-09 65.5 63 49.2
Sabra04G0106400 Salix brachista HOM05D000725 ORTHO05D003141 3.7e-09 65.5 121 38.0
AT2G21450 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 4.8e-09 65.1 116 35.3
Sp4g15610 Schrenkiella parvula HOM05D000725 ORTHO05D003141 6.2e-09 64.7 91 42.9
CAN.G9.13 Capsicum annuum HOM05D000725 ORTHO05D003141 8.2e-09 64.3 71 43.7
BraA04t18064Z Brassica rapa HOM05D000725 ORTHO05D003141 1.1e-08 63.9 87 41.4
BcaC02g07841 Brassica carinata HOM05D000725 ORTHO05D003141 1.4e-08 63.5 63 47.6
A02p25850 Brassica napus HOM05D000725 ORTHO05D003141 1.8e-08 63.2 104 36.5
Thhalv10000722m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 1.8e-08 63.2 62 51.6
BcaB06g28666 Brassica carinata HOM05D000725 ORTHO05D003141 3.1e-08 62.4 88 34.1
Carub.0004s0050 Capsella rubella HOM05D000725 ORTHO05D003141 3.1e-08 62.4 82 40.2
Zm00001eb173050 Zea mays HOM05D000725 ORTHO05D003141 4.0e-08 62.0 74 36.5
BcaB06g28665 Brassica carinata HOM05D000725 ORTHO05D003141 5.3e-08 61.6 60 50.0
C04p62740 Brassica napus HOM05D000725 ORTHO05D003141 6.9e-08 61.2 114 34.2
PSO063G2790 Papaver somniferum HOM05D000725 ORTHO05D003141 1.2e-07 60.5 52 53.8
Zm00001eb416780 Zea mays HOM05D000725 ORTHO05D003141 1.2e-07 60.5 121 28.9
vmacro17926 Vaccinium macrocarpon HOM05D000045 ORTHO05D016003 1.5e-07 60.1 73 46.6
Aa31LG7G15070 Aethionema arabicum HOM05D000725 ORTHO05D003141 4.9e-06 55.1 36 61.1
BraA03t12293Z Brassica rapa HOM05D000725 ORTHO05D003141 6.5e-06 54.7 32 68.8


User provided reference genes

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