Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 1.1e-295 1019.2 529 100.0
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 1.0e-216 756.9 549 75.0
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 4.2e-210 734.9 547 74.2
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 8.8e-208 727.2 535 72.0
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 6.9e-205 717.6 560 70.2
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 4.7e-201 704.9 533 71.9
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 4.7e-201 704.9 534 69.7
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.0e-200 703.7 532 69.2
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.1e-199 700.3 516 73.1
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 9.7e-199 697.2 517 73.5
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 4.8e-198 694.9 539 73.7
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 4.1e-197 691.8 531 71.6
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 2.0e-196 689.5 531 71.2
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 1.9e-194 682.9 520 68.7
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 4.2e-194 681.8 501 72.1
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 4.2e-194 681.8 501 71.7
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 1.2e-193 680.2 518 72.2
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.1e-193 679.5 500 70.6
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 2.1e-193 679.5 525 71.2
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 3.6e-193 678.7 516 72.1
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 1.0e-192 677.2 514 70.4
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 1.0e-192 677.2 488 74.4
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 2.3e-192 676.0 538 69.9
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 2.3e-192 676.0 530 67.5
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 2.0e-191 672.9 531 70.8
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 2.0e-191 672.9 525 68.0
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 1.7e-190 669.8 499 68.7
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 4.8e-190 668.3 499 71.3
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 8.2e-190 667.5 492 71.1
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.1e-189 667.2 521 67.4
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 1.8e-189 666.4 506 68.2
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 7.0e-189 664.5 521 67.0
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 9.1e-189 664.1 521 67.4
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 1.6e-188 663.3 494 70.0
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.7e-188 662.5 521 66.8
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 2.7e-188 662.5 522 70.3
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 5.9e-188 661.4 524 67.6
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 7.7e-188 661.0 516 70.0
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 7.7e-188 661.0 488 71.5
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 1.7e-187 659.8 517 67.7
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 2.9e-187 659.1 488 71.5
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 5.0e-187 658.3 498 70.3
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 5.0e-187 658.3 529 65.8
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 8.5e-187 657.5 488 71.5
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 4.2e-186 655.2 508 67.9
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 9.4e-186 654.1 516 69.8
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 1.2e-185 653.7 501 68.9
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 1.6e-185 653.3 456 76.3
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.6e-185 653.3 493 69.4
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 6.1e-185 651.4 559 64.0
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 6.1e-185 651.4 485 72.2
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 8.0e-185 651.0 492 70.1
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.8e-184 649.8 490 70.4
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 3.0e-184 649.0 530 67.2
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 5.2e-184 648.3 525 65.7
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.2e-183 647.1 503 69.8
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.6e-183 646.0 475 69.1
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 3.4e-183 645.6 530 66.8
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 2.2e-182 642.9 502 68.5
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 3.7e-182 642.1 484 69.2
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 4.1e-181 638.6 509 64.2
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 2.7e-180 636.0 493 69.6
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 5.9e-180 634.8 508 66.7
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 7.7e-180 634.4 455 71.6
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 7.7e-180 634.4 496 70.2
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 1.3e-179 633.6 515 65.8
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 6.5e-179 631.3 488 67.4
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 1.5e-178 630.2 488 67.2
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 4.2e-178 628.6 488 67.8
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 5.5e-178 628.2 488 67.8
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 5.5e-178 628.2 489 67.7
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 7.2e-178 627.9 498 67.1
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 2.1e-177 626.3 488 67.6
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 3.6e-177 625.5 507 66.9
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 8.0e-177 624.4 501 64.7
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.0e-176 624.0 503 66.2
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 3.4e-175 619.0 501 65.7
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 2.8e-174 615.9 488 68.9
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 3.7e-174 615.5 481 66.7
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 3.1e-173 612.5 516 65.1
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.0e-171 607.4 485 67.6
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 1.1e-170 604.0 499 65.1
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.5e-170 602.8 530 62.6
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 3.3e-170 602.4 542 63.3
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 5.6e-170 601.7 532 62.8
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 2.3e-168 596.3 497 64.2
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 1.2e-164 583.9 494 63.8
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 8.9e-160 567.8 393 72.3
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 9.8e-159 564.3 500 63.8
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 2.7e-156 556.2 440 66.4
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 6.8e-152 541.6 424 66.0
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 2.2e-150 536.6 497 59.2
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 3.5e-148 529.3 432 64.4
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 7.1e-141 505.0 498 55.8
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 4.3e-138 495.7 516 54.8
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 3.1e-96 356.7 312 62.8
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 6.1e-92 342.4 318 56.3
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 2.5e-85 320.5 458 43.9
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 8.2e-81 305.4 244 64.8
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 1.9e-77 294.3 496 40.9
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 2.3e-75 287.3 167 82.0
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.3e-75 287.3 258 59.7
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 4.8e-73 279.6 302 52.6
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.8e-67 261.2 229 62.0
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 5.9e-63 246.1 509 35.8
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 5.0e-62 243.0 204 62.7
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 4.2e-61 240.0 403 37.2
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 2.3e-54 217.6 265 49.8
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 3.8e-54 216.9 167 74.3
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 6.6e-54 216.1 151 71.5
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 6.6e-54 216.1 125 77.6
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 9.5e-53 212.2 125 79.2
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 1.2e-47 195.3 144 63.9
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 5.2e-43 179.9 343 37.0
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 3.3e-37 160.6 141 64.5
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 3.7e-33 147.1 80 83.8
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 3.0e-30 137.5 112 68.8
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 1.6e-28 131.7 226 39.4
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 4.0e-19 100.5 85 55.3
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 1.2e-18 99.0 87 66.7
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 3.2e-16 90.9 118 49.2
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 4.2e-16 90.5 53 79.2
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 5.4e-16 90.1 102 57.8
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 1.3e-14 85.5 95 50.5
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 3.0e-14 84.3 143 43.4
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 3.1e-11 74.3 49 63.3
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 5.3e-11 73.6 80 55.0
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 2.2e-09 68.2 76 56.6
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 7.9e-07 59.7 131 40.5
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 1.3e-06 58.9 32 84.4


User provided reference genes

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