Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014276 Lotus japonicus HOM05D000327 ORTHO05D000218 5.2e-65 251.1 149 100.0
Lj6g0018846 Lotus japonicus HOM05D000327 ORTHO05D000218 5.7e-64 247.7 149 99.3
Glyma.15G126500 Glycine max HOM05D000327 ORTHO05D000218 3.6e-42 175.3 137 68.6
Lj6g0022216 Lotus japonicus HOM05D000327 ORTHO05D000218 3.6e-42 175.3 138 73.9
Glyma.09G020000 Glycine max HOM05D000327 ORTHO05D000218 2.0e-40 169.5 107 81.3
Medtr2g028870 Medicago truncatula HOM05D000327 ORTHO05D000218 2.6e-40 169.1 101 83.2
Ca_11353_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 1.3e-39 166.8 101 82.2
Lalb_Chr09g0328781 Lupinus albus HOM05D000327 ORTHO05D000218 1.7e-39 166.4 141 63.8
VMungo0540G1796 Vigna mungo HOM05D000327 ORTHO05D000218 8.3e-39 164.1 137 65.7
Phvul.006G131900 Phaseolus vulgaris HOM05D000327 ORTHO05D000218 5.4e-38 161.4 137 65.0
TPR.G17509 Trifolium pratense HOM05D000327 ORTHO05D000218 1.2e-37 160.2 101 78.2
Lalb_Chr16g0385331 Lupinus albus HOM05D000327 ORTHO05D000218 1.6e-37 159.8 138 66.7
Ca_18777_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 2.3e-36 156.0 115 66.1
Haze_06012 Corylus avellana HOM05D000327 ORTHO05D000218 3.9e-36 155.2 140 62.1
Cfa000730 Carpinus fangiana HOM05D000327 ORTHO05D000218 6.6e-36 154.5 141 61.0
Prupe.4G108300 Prunus persica HOM05D000327 ORTHO05D000218 6.6e-36 154.5 106 70.8
Duzib235G0173 Durio zibethinus HOM05D000327 ORTHO05D000218 3.6e-34 148.7 141 55.3
FAN16G2218 Fragaria x ananassa HOM05D000327 ORTHO05D000218 6.2e-34 147.9 106 67.9
RcHm_v2.0_Chr5g0019691 Rosa chinensis HOM05D000327 ORTHO05D000218 6.2e-34 147.9 106 67.9
Duzib160G0717 Durio zibethinus HOM05D000327 ORTHO05D000218 8.1e-34 147.5 106 68.9
FvH4_3g12010 Fragaria vesca HOM05D000327 ORTHO05D000218 8.1e-34 147.5 106 67.0
FAN21G1375 Fragaria x ananassa HOM05D000327 ORTHO05D000218 1.4e-33 146.7 106 67.0
FAN25G1512 Fragaria x ananassa HOM05D000327 ORTHO05D000218 2.4e-33 146.0 106 67.0
MD10G1236000 Malus domestica HOM05D000327 ORTHO05D000218 3.1e-33 145.6 110 68.2
Sabra12G0089700 Salix brachista HOM05D000327 ORTHO05D000218 4.0e-33 145.2 106 68.9
Duzib192G0490 Durio zibethinus HOM05D000327 ORTHO05D000218 5.2e-33 144.8 106 66.0
CiPaw.10G065900 Carya illinoinensis HOM05D000327 ORTHO05D000218 1.2e-32 143.7 137 56.9
MD05G1255900 Malus domestica HOM05D000327 ORTHO05D000218 1.2e-32 143.7 110 67.3
Gohir.D05G146800 Gossypium hirsutum HOM05D000327 ORTHO05D000218 1.5e-32 143.3 106 67.0
Thecc.06G138800 Theobroma cacao HOM05D000327 ORTHO05D000218 1.5e-32 143.3 141 55.3
CiPaw.09G079300 Carya illinoinensis HOM05D000327 ORTHO05D000218 2.0e-32 142.9 106 67.0
COL.COLO4_30955 Corchorus olitorius HOM05D000327 ORTHO05D000218 3.4e-32 142.1 106 65.1
Gorai.009G150700 Gossypium raimondii HOM05D000327 ORTHO05D000218 3.4e-32 142.1 106 66.0
QL11p018227 Quercus lobata HOM05D000327 ORTHO05D000218 3.4e-32 142.1 106 66.0
Gohir.A05G144400 Gossypium hirsutum HOM05D000327 ORTHO05D000218 5.8e-32 141.4 106 65.1
Potri.012G119000 Populus trichocarpa HOM05D000327 ORTHO05D000218 7.6e-32 141.0 106 67.0
Potri.015G117600 Populus trichocarpa HOM05D000327 ORTHO05D000218 9.9e-32 140.6 106 65.1
Sabra15G0135800 Salix brachista HOM05D000327 ORTHO05D000218 1.3e-31 140.2 106 66.0
TAR626G0925 Trochodendron aralioides HOM05D000327 ORTHO05D000218 1.3e-31 140.2 103 62.1
Ciclev10014925m.g Citrus clementina HOM05D000327 ORTHO05D000218 6.4e-31 137.9 107 65.4
MELO3C021806.2 Cucumis melo HOM05D000327 ORTHO05D000218 6.4e-31 137.9 137 50.4
Atru.chr10.604 Acer truncatum HOM05D000327 ORTHO05D000218 1.9e-30 136.3 141 53.2
Cpa.g.sc135.38 Carica papaya HOM05D000327 ORTHO05D000218 1.9e-30 136.3 107 63.6
CsaV3_1G046510 Cucumis sativus L. HOM05D000327 ORTHO05D000218 4.1e-30 135.2 137 49.6
TWI38G1261 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 4.1e-30 135.2 104 64.4
Dinv11865 Davidia involucrata HOM05D000327 ORTHO05D000218 5.4e-30 134.8 141 51.1
ClCG01G009130 Citrullus lanatus HOM05D000327 ORTHO05D000218 9.2e-30 134.0 137 49.6
CANSAT35G0541 Cannabis sativa HOM05D000327 ORTHO05D000218 1.6e-29 133.3 108 61.1
Rhsim13G0129700 Rhododendron simsii HOM05D000327 ORTHO05D000218 2.1e-29 132.9 141 49.6
Lj1A1142T64 Lonicera japonica HOM05D000327 ORTHO05D000218 2.7e-29 132.5 142 52.1
Gohir.A06G142060 Gossypium hirsutum HOM05D000327 ORTHO05D000218 4.6e-29 131.7 135 52.6
PGR083G0861 Punica granatum HOM05D000327 ORTHO05D000218 6.0e-29 131.3 109 60.6
Actinidia22379 Actinidia chinensis HOM05D000327 ORTHO05D000218 7.8e-29 131.0 142 50.7
Gorai.010G169300 Gossypium raimondii HOM05D000327 ORTHO05D000218 7.8e-29 131.0 135 52.6
Manes.16G047576 Manihot esculenta HOM05D000327 ORTHO05D000218 2.3e-28 129.4 106 61.3
Sed0016472 Sechium edule HOM05D000327 ORTHO05D000218 8.7e-28 127.5 111 58.6
CSS0019482 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 1.5e-27 126.7 141 48.2
CSS0046162 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 1.5e-27 126.7 141 48.2
CDE06G0707 Ceratophyllum demersum HOM05D000327 ORTHO05D000218 2.5e-27 125.9 106 51.9
Sed0026999 Sechium edule HOM05D000327 ORTHO05D000218 2.5e-27 125.9 107 59.8
Nitab4.5_0001876g0070 Nicotiana tabacum HOM05D000327 ORTHO05D000218 3.3e-27 125.6 107 63.6
CSS0027721 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 4.3e-27 125.2 102 62.7
CSS0048794 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 4.3e-27 125.2 102 62.7
CDE02G2449 Ceratophyllum demersum HOM05D000327 ORTHO05D000218 1.2e-26 123.6 113 49.6
PSO541G6330 Papaver somniferum HOM05D000327 ORTHO05D000218 1.6e-26 123.2 95 65.3
vmacro03500 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 1.6e-26 123.2 106 58.5
Eucgr.D01052 Eucalyptus grandis HOM05D000327 ORTHO05D000218 2.1e-26 122.9 106 60.4
PSO675G0479 Papaver somniferum HOM05D000327 ORTHO05D000218 2.1e-26 122.9 95 65.3
Nitab4.5_0003027g0050 Nicotiana tabacum HOM05D000327 ORTHO05D000218 6.2e-26 121.3 97 63.9
Peaxi162Scf00623g00313 Petunia axillaris HOM05D000327 ORTHO05D000218 1.4e-25 120.2 100 63.0
Solyc02g069230.3 Solanum lycopersicum HOM05D000327 ORTHO05D000218 2.4e-25 119.4 89 68.5
CAN.G1202.9 Capsicum annuum HOM05D000327 ORTHO05D000218 3.1e-25 119.0 103 62.1
Sopen02g018390 Solanum pennellii HOM05D000327 ORTHO05D000218 3.1e-25 119.0 89 67.4
CSS0005495 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 5.2e-25 118.2 102 59.8
PGSC0003DMG400021214 Solanum tuberosum HOM05D000327 ORTHO05D000218 5.2e-25 118.2 100 62.0
TAR627G1088 Trochodendron aralioides HOM05D000327 ORTHO05D000218 9.0e-25 117.5 106 54.7
GSVIVG01026257001 Vitis vinifera HOM05D000327 ORTHO05D000218 9.0e-25 117.5 88 63.6
DCAR_004315 Daucus carota HOM05D000327 ORTHO05D000218 2.0e-24 116.3 104 56.7
Hma1.2p1_0092F.1_g046800 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 2.0e-24 116.3 142 47.9
Lsat_1_v5_gn_2_63540 Lactuca sativa HOM05D000327 ORTHO05D000218 3.4e-24 115.5 89 60.7
BolC1t01342H Brassica oleracea HOM05D000327 ORTHO05D000218 9.9e-24 114.0 116 56.0
Zm00001eb032750 Zea mays HOM05D000327 ORTHO05D000218 9.9e-24 114.0 107 57.9
AL7G34370 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 1.3e-23 113.6 111 57.7
BraA01t01107Z Brassica rapa HOM05D000327 ORTHO05D000218 3.8e-23 112.1 100 58.0
DCAR_007792 Daucus carota HOM05D000327 ORTHO05D000218 3.8e-23 112.1 92 62.0
C01p13680 Brassica napus HOM05D000327 ORTHO05D000218 4.9e-23 111.7 116 55.2
Aqoxy1G01492 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 6.4e-23 111.3 107 50.5
A01p11590 Brassica napus HOM05D000327 ORTHO05D000218 6.4e-23 111.3 100 57.0
Os12g0631200 Oryza sativa ssp. japonica HOM05D000327 ORTHO05D000218 8.4e-23 110.9 107 56.1
THA.LOC104811473 Tarenaya hassleriana HOM05D000327 ORTHO05D000218 8.4e-23 110.9 110 55.5
BcaC06g30628 Brassica carinata HOM05D000327 ORTHO05D000218 1.4e-22 110.2 96 59.4
Carub.0007s2148 Capsella rubella HOM05D000327 ORTHO05D000218 1.9e-22 109.8 96 60.4
ECA238G3547 Erigeron canadensis HOM05D000327 ORTHO05D000218 1.9e-22 109.8 89 57.3
Lalb_Chr18g0057751 Lupinus albus HOM05D000327 ORTHO05D020020 2.4e-22 109.4 81 71.6
CARHR226490 Cardamine hirsuta HOM05D000327 ORTHO05D000218 5.4e-22 108.2 93 59.1
Lsat_1_v5_gn_8_117801 Lactuca sativa HOM05D000327 ORTHO05D000218 5.4e-22 108.2 90 60.0
HanXRQChr14g0447551 Helianthus annuus HOM05D000327 ORTHO05D000218 7.1e-22 107.8 91 54.9
Sp7g18240 Schrenkiella parvula HOM05D000327 ORTHO05D000218 7.1e-22 107.8 88 59.1
BcaC09g51386 Brassica carinata HOM05D000327 ORTHO05D000218 9.3e-22 107.5 112 54.5
AT4G19670 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 2.1e-21 106.3 98 59.2
BcaNung01758 Brassica carinata HOM05D000327 ORTHO05D000218 2.1e-21 106.3 103 54.4
Gohir.D06G145450 Gossypium hirsutum HOM05D000327 ORTHO05D000218 3.5e-21 105.5 135 48.1
Thhalv10024888m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 4.6e-21 105.1 103 53.4
Cc09_g06790 Coffea canephora HOM05D000327 ORTHO05D000218 6.0e-21 104.8 82 62.2
HanXRQChr04g0115191 Helianthus annuus HOM05D000327 ORTHO05D000218 3.0e-20 102.4 82 54.9
SGA_v2.0_scaffold535G52769 Striga asiatica HOM05D000327 ORTHO05D000218 3.0e-20 102.4 97 55.7
BcaC07g37741 Brassica carinata HOM05D000327 ORTHO05D020020 8.7e-20 100.9 105 55.2
MBI18_g04365_MAGBIO Magnolia biondii HOM05D000327 ORTHO05D000218 8.7e-20 100.9 102 49.0
Migut.M01965 Erythranthe guttata HOM05D000327 ORTHO05D000218 3.3e-19 99.0 96 57.3
MSTRG.16335 Avicennia marina HOM05D000327 ORTHO05D000218 4.8e-18 95.1 104 51.0
Aa31LG6G2220 Aethionema arabicum HOM05D000327 ORTHO05D000218 1.4e-17 93.6 98 51.0
EL10Ac7g17231 Beta vulgaris HOM05D000327 ORTHO05D000218 1.4e-17 93.6 114 43.9
Ah.08g212100 Amaranthus hybridus HOM05D000327 ORTHO05D000218 1.8e-17 93.2 95 49.5
AUR62043132 Chenopodium quinoa HOM05D000327 ORTHO05D000218 2.9e-15 85.9 109 46.8
AUR62036831 Chenopodium quinoa HOM05D000327 ORTHO05D000218 8.4e-15 84.3 94 50.0
unitig_37.g12057 Utricularia gibba HOM05D000327 ORTHO05D000218 9.3e-14 80.9 88 42.0
ATR0763G142 Amborella trichopoda HOM05D000327 ORTHO05D000218 2.1e-13 79.7 106 42.5
HPP92_028555 Vanilla planifolia HOM05D000327 ORTHO05D000218 2.1e-13 79.7 88 47.7
SEGI_07561 Sequoiadendron giganteum HOM05D000327 ORTHO05D000218 3.9e-12 75.5 83 48.2
unitig_92.g28187 Utricularia gibba HOM05D001742 ORTHO05D001689 1.1e-11 73.9 89 39.3
Nn7g38067 Nelumbo nucifera HOM05D000327 ORTHO05D000218 1.9e-11 73.2 57 56.1
C07p50510 Brassica napus HOM05D000327 ORTHO05D020020 1.6e-10 70.1 82 46.3
BcaB04g17523 Brassica carinata HOM05D000327 ORTHO05D000218 4.8e-10 68.6 60 56.7
A03p51960 Brassica napus HOM05D000327 ORTHO05D000218 8.4e-07 57.8 63 50.8
BraA03t14283Z Brassica rapa HOM05D000327 ORTHO05D000218 3.2e-06 55.8 45 57.8


User provided reference genes

Program Settings