Gene: AT4G19670

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G19670
  • Transcript Identifier AT4G19670.2
  • Gene Type Coding gene
  • Location Chr4 : 10699383-10701342 : negative

Gene Family Information

  • ID HOM05D000327
  • #Genes/#Species 1418/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G19670.2
  • uniprot O81849

Descriptions

  • Description RING/U-box superfamily protein
  • Computational description RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60250.1); Has 3330 Blast hits to 3305 proteins in 225 species: Archae - 1; Bacteria - 6; Metazoa - 1257; Fungi - 660; Plants - 920; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0000209
IBA
Gene Ontologyprotein polyubiquitination1
GO:0006511
IBA
Gene Ontologyubiquitin-dependent protein catabolic process1
GO:0032436
IBA
Gene Ontologypositive regulation of proteasomal ubiquitin-dependent protein catabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004523
IEA
Gene OntologyRNA-DNA hybrid ribonuclease activity
GO:0004523
IEA
InterProRNA-DNA hybrid ribonuclease activity
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0031624
IBA
Gene Ontologyubiquitin conjugating enzyme binding1
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000151
IBA
Gene Ontologyubiquitin ligase complex1
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018957 Zinc finger, C3HC4 RING-type
IPR036397 Ribonuclease H superfamily
IPR031127 E3 ubiquitin ligase RBR family
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR002156 Ribonuclease H domain
IPR012337 Ribonuclease H-like superfamily
IPR002867 IBR domain
IPR001841 Zinc finger, RING-type
Mapman id Description
19.2.2.1.4.4.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.plant-specific E3 ubiquitin ligase (RSL/RFA)