Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 4.3e-112 407.9 195 100.0
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 3.2e-99 365.2 195 91.8
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 7.5e-88 327.4 195 82.6
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 1.7e-87 326.2 196 82.1
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.8e-86 322.8 195 81.0
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 7.0e-86 320.9 196 80.6
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.6e-85 319.7 195 80.0
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 2.7e-85 318.9 196 80.6
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 3.5e-85 318.5 195 79.5
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 4.5e-85 318.2 195 79.5
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.8e-81 306.2 194 77.8
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 3.0e-81 305.4 196 77.0
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 5.2e-81 304.7 196 77.6
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 5.2e-73 278.1 194 72.2
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 2.0e-72 276.2 197 69.0
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 4.9e-71 271.6 198 68.7
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 6.3e-71 271.2 198 68.2
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 1.8e-70 269.6 198 67.7
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.2e-69 266.9 198 68.7
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.2e-69 266.9 198 68.2
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.5e-69 265.4 198 67.2
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 4.5e-69 265.0 197 67.5
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 5.9e-69 264.6 198 66.7
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 5.9e-69 264.6 199 66.8
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.3e-68 262.7 198 67.2
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 3.8e-68 261.9 198 68.2
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 5.0e-68 261.5 198 67.2
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.6e-68 261.2 198 67.7
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.6e-68 261.2 198 67.7
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.6e-68 261.2 198 67.7
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 8.6e-68 260.8 198 66.7
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.1e-67 260.4 198 67.7
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 3.3e-67 258.8 200 66.5
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 7.3e-67 257.7 198 66.2
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 9.5e-67 257.3 198 65.2
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 9.5e-67 257.3 198 66.7
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 9.5e-67 257.3 210 63.8
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.2e-66 256.9 199 66.3
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.2e-66 256.9 198 66.2
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 2.1e-66 256.1 214 61.7
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 2.8e-66 255.8 198 65.2
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 2.8e-66 255.8 201 63.7
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 3.6e-66 255.4 198 65.2
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 3.6e-66 255.4 201 66.2
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 4.7e-66 255.0 198 65.2
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 4.7e-66 255.0 198 66.7
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.4e-65 253.4 198 66.2
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 1.4e-65 253.4 198 66.2
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.8e-65 253.1 199 63.8
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.8e-65 253.1 198 65.7
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 3.0e-65 252.3 198 63.1
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.0e-65 251.9 201 64.7
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 8.9e-65 250.8 222 59.9
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 8.9e-65 250.8 198 64.6
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 1.2e-64 250.4 198 61.6
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.2e-64 250.4 198 62.6
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 1.5e-64 250.0 198 65.7
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 2.0e-64 249.6 198 65.2
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 4.4e-64 248.4 198 64.6
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 5.7e-64 248.1 196 65.3
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.2e-63 246.1 200 61.0
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 2.9e-63 245.7 201 64.2
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 6.4e-63 244.6 200 62.0
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.1e-62 243.8 199 63.3
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 2.4e-62 242.7 198 64.6
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 4.1e-62 241.9 200 60.5
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 5.4e-62 241.5 173 69.9
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 1.2e-61 240.4 197 62.9
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 2.0e-61 239.6 196 62.2
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 2.7e-61 239.2 200 63.0
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.0e-60 237.3 195 64.6
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 3.0e-60 235.7 198 61.1
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 4.3e-59 231.9 199 61.3
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-57 227.3 198 59.6
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.8e-57 226.5 195 63.1
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 3.1e-57 225.7 190 61.6
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 5.2e-57 224.9 195 59.5
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 8.9e-57 224.2 197 58.4
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 5.8e-56 221.5 200 59.0
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.3e-55 220.3 201 58.7
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.3e-55 220.3 199 58.8
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 1.3e-55 220.3 199 58.8
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 1.7e-55 219.9 199 58.3
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.7e-55 219.9 190 63.2
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 2.9e-55 219.2 199 58.3
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 3.7e-55 218.8 199 60.8
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 4.9e-55 218.4 200 58.5
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 6.4e-55 218.0 201 56.7
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 3.2e-54 215.7 201 57.2
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 7.0e-54 214.5 201 58.2
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 9.2e-54 214.2 196 58.7
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.2e-53 213.8 200 59.0
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 1.6e-53 213.4 203 55.7
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 2.7e-53 212.6 200 57.0
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 3.5e-53 212.2 198 58.1
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 4.6e-53 211.8 201 58.2
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 9.5e-51 204.1 200 54.5
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 4.4e-48 195.3 141 65.2
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 4.4e-48 195.3 200 49.0
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 7.5e-48 194.5 160 64.4
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.4e-46 190.3 194 54.1
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.9e-46 189.9 201 52.2
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 2.4e-46 189.5 154 61.0
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.2e-45 187.2 141 64.5
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 6.0e-45 184.9 201 47.8
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 3.6e-42 175.6 143 56.6
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-41 174.1 138 66.7
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.0e-41 172.2 144 60.4
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 4.0e-41 172.2 163 58.3
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.9e-41 171.0 199 51.3
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 3.8e-39 165.6 110 75.5
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 4.9e-39 165.2 198 48.5
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.9e-38 163.3 213 44.6
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 9.2e-38 161.0 198 43.4
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.2e-37 160.6 145 61.4
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 6.0e-37 158.3 215 40.9
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 8.6e-36 154.5 194 46.4
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 9.6e-35 151.0 135 62.2
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.2e-34 150.6 202 42.1
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 2.4e-33 146.4 122 57.4
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.7e-29 132.9 176 40.3
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 9.6e-27 124.4 114 54.4
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 6.2e-26 121.7 134 52.2
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.3e-20 104.0 78 60.3
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 5.3e-17 92.0 142 38.0
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 3.2e-14 82.8 204 27.5
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 3.7e-10 69.3 50 74.0


User provided reference genes

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