Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 3.4e-184 648.3 345 100.0
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.1e-139 500.4 354 72.3
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.1e-139 500.4 354 72.3
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 2.9e-135 485.7 354 71.5
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 5.7e-131 471.5 354 69.5
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 2.4e-129 466.1 361 68.1
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 4.1e-129 465.3 352 67.6
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 4.1e-129 465.3 352 67.3
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 5.9e-120 434.9 367 61.0
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 2.5e-118 429.5 350 63.1
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 4.4e-107 392.1 363 58.7
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 3.2e-102 375.9 360 58.9
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 1.1e-97 360.9 262 66.0
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 7.0e-97 358.2 264 65.5
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 9.1e-97 357.8 338 55.0
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.2e-96 357.5 339 56.3
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 7.7e-96 354.8 264 65.5
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.7e-96 354.8 264 65.5
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.3e-95 354.0 264 65.5
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 2.9e-95 352.8 342 55.6
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.1e-94 350.9 264 65.2
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 9.4e-94 347.8 341 53.1
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 4.7e-93 345.5 261 63.2
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.0e-92 344.4 338 53.3
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.4e-92 344.0 337 51.0
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.3e-92 343.2 342 53.2
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 8.8e-92 341.3 309 56.3
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.5e-91 340.5 346 53.2
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 2.0e-91 340.1 255 64.7
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 2.6e-91 339.7 267 61.0
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 5.7e-91 338.6 263 62.7
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.7e-90 337.0 337 50.1
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 2.8e-90 336.3 340 51.8
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 3.7e-90 335.9 264 59.1
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 6.3e-90 335.1 332 53.0
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 3.1e-89 332.8 261 61.3
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 4.1e-89 332.4 264 61.0
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 4.1e-89 332.4 261 61.3
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 5.4e-89 332.0 264 59.8
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 7.0e-89 331.6 264 62.1
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 9.1e-89 331.3 340 51.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.6e-88 330.5 261 59.8
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 2.7e-88 329.7 264 57.6
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 4.5e-88 328.9 341 51.9
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 7.7e-88 328.2 341 50.1
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 7.7e-88 328.2 266 60.5
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 7.7e-88 328.2 268 56.7
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 7.7e-88 328.2 309 52.8
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 1.0e-87 327.8 264 59.1
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.0e-87 327.8 340 50.6
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 1.7e-87 327.0 262 58.0
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.7e-87 327.0 262 58.0
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 3.8e-87 325.9 261 60.2
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 5.0e-87 325.5 261 60.9
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 6.5e-87 325.1 359 49.3
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 8.5e-87 324.7 264 60.6
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 8.5e-87 324.7 264 61.0
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 1.1e-86 324.3 340 51.2
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.9e-86 323.6 264 60.2
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.9e-86 323.6 340 50.6
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 2.5e-86 323.2 264 60.6
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 2.5e-86 323.2 266 61.7
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 4.2e-86 322.4 264 60.6
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 7.2e-86 321.6 268 59.0
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 1.2e-85 320.9 340 51.2
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 1.6e-85 320.5 261 57.9
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.6e-85 320.5 317 48.9
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 3.6e-85 319.3 340 49.7
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 3.6e-85 319.3 341 49.9
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 3.6e-85 319.3 341 49.9
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 4.7e-85 318.9 256 61.3
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 1.4e-84 317.4 264 57.2
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 2.3e-84 316.6 233 65.2
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 2.3e-84 316.6 255 57.6
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 3.0e-84 316.2 258 60.9
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 3.0e-84 316.2 261 57.1
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 4.0e-84 315.8 258 60.9
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 6.8e-84 315.1 340 50.3
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 8.8e-84 314.7 334 48.5
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.2e-83 314.3 339 50.1
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.5e-83 313.9 342 50.6
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.5e-83 313.9 342 50.6
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 1.5e-83 313.9 266 57.9
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 4.4e-83 312.4 256 59.8
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 4.4e-83 312.4 342 49.1
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 9.8e-83 311.2 339 49.9
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 1.7e-82 310.5 264 56.8
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 8.3e-82 308.1 339 49.3
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.4e-81 307.4 341 49.9
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 4.1e-81 305.8 343 48.4
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 5.4e-81 305.4 254 57.9
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.6e-80 303.9 246 58.1
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 3.5e-80 302.8 249 59.8
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 3.5e-80 302.8 315 49.8
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 7.8e-80 301.6 270 53.3
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.7e-79 300.4 343 46.9
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 2.9e-79 299.7 341 47.5
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 3.8e-79 299.3 307 50.2
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 1.5e-78 297.4 342 48.5
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.8e-76 290.4 343 46.4
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 3.0e-76 289.7 221 63.3
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 4.0e-76 289.3 205 67.3
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 4.0e-76 289.3 340 47.4
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.8e-73 280.4 208 65.9
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 5.4e-73 278.9 235 57.9
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 3.5e-72 276.2 397 40.3
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 3.6e-69 266.2 208 61.5
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 3.1e-68 263.1 269 50.9
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 1.4e-65 254.2 268 49.6
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 3.4e-59 233.0 165 69.1
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 6.4e-58 228.8 235 54.0
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 6.4e-58 228.8 235 54.0
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 6.4e-58 228.8 246 47.2
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.1e-57 228.0 262 47.3
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 1.6e-56 224.2 237 52.7
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.5e-54 217.6 208 51.0
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.4e-52 211.1 240 50.8
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 5.8e-51 205.7 232 46.1
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 6.6e-47 192.2 346 34.7
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 4.3e-46 189.5 207 51.2
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.9e-42 176.8 221 38.5
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.1e-41 174.9 261 37.5
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.4e-41 173.7 128 63.3
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 9.3e-41 171.8 217 44.7
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 6.9e-36 155.6 202 44.1
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 5.8e-35 152.5 217 43.8
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 7.6e-35 152.1 164 50.0
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 2.9e-34 150.2 200 40.5
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 8.4e-34 148.7 109 60.6
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 4.6e-32 142.9 238 39.1
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.8e-31 141.0 261 37.2
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 3.9e-31 139.8 202 41.6
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.1e-30 138.3 112 57.1
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 4.3e-30 136.3 110 59.1
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 3.5e-24 116.7 246 31.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 2.9e-18 97.1 195 32.3
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 1.9e-14 84.3 196 28.6
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.8e-10 70.1 133 38.3
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 6.5e-10 69.3 87 46.0
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.6e-08 64.7 54 51.9


User provided reference genes

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