Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 2452.2 1317 100.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 2036.2 1317 80.7
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 2011.1 1317 81.4
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 2001.5 1303 80.5
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1990.7 1317 80.5
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1983.0 1317 79.6
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1966.0 1317 78.8
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1939.1 1317 77.7
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1937.5 1317 76.8
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1912.5 1317 76.8
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1912.5 1317 76.2
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1888.6 1317 75.7
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1853.2 1321 75.1
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1852.4 1317 75.4
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1852.0 1317 74.7
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1852.0 1317 75.4
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1838.2 1365 72.7
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1829.3 1303 75.7
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1826.2 1549 65.8
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1816.2 1317 72.4
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1813.1 1317 71.8
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1812.7 1317 74.5
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1812.0 1317 73.0
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1809.7 1317 71.3
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1803.5 1317 72.1
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1803.1 1317 74.3
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1796.6 1337 74.7
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1795.4 1317 74.6
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1791.9 1317 71.8
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1782.3 1317 71.2
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1778.8 1317 71.4
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1777.3 1317 73.0
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1776.9 1436 67.4
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1768.4 1318 72.2
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1756.5 1317 69.1
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1750.3 1317 70.0
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1744.2 1317 69.9
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1728.0 1317 69.7
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1723.4 1317 69.6
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1721.8 1317 69.4
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1719.9 1317 71.5
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1717.2 1317 69.2
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1716.0 1325 69.0
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1715.7 1343 69.2
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1707.6 1340 68.3
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1703.3 1317 68.7
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1699.5 1332 68.3
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1699.1 1332 68.3
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1699.1 1359 67.3
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1697.6 1210 74.7
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1696.4 1317 68.0
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1695.2 1318 69.0
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1689.5 1317 68.6
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1688.7 1370 66.8
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1683.3 1317 67.4
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1664.0 1317 67.9
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1663.3 1322 69.3
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1643.2 1318 68.4
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1640.9 1210 72.1
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1637.9 1318 68.3
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1637.5 1318 68.3
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1627.8 1317 65.4
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1616.7 1401 63.9
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1616.3 1261 68.1
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1594.7 1254 68.4
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1580.1 1317 64.3
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1578.5 1303 64.8
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1573.5 1317 64.6
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1563.9 1318 65.0
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1546.9 1317 62.8
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1536.2 1317 62.9
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1535.0 1370 63.0
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1533.1 1303 62.6
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1525.0 1303 65.2
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1512.3 1317 62.1
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1258.0 1317 52.5
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1148.3 1317 49.1
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1107.4 1327 47.4
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1099.0 1062 56.2
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.1e-310 1070.5 1025 58.0
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 2.0e-309 1066.2 902 66.7
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.2e-293 1013.8 1316 46.4
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.9e-291 1006.5 743 70.9
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 2.4e-286 989.6 1059 52.8
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.6e-285 986.1 759 69.3
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.9e-280 969.9 631 79.6
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 4.3e-280 968.8 631 79.6
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 4.2e-275 952.2 888 58.3
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 2.1e-271 939.9 767 66.1
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.2e-269 934.1 1252 45.4
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.4e-259 900.6 1109 49.1
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 7.4e-256 888.3 669 71.6
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 6.3e-255 885.2 631 75.0
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.4e-253 879.4 594 79.8
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.4e-253 879.4 594 79.8
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 3.2e-251 872.8 764 60.7
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 4.1e-238 829.3 787 59.5
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 2.0e-232 810.4 728 59.3
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 3.1e-230 803.1 724 60.5
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 1.7e-223 780.8 1270 39.4
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 5.4e-222 775.8 558 73.5
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 1.0e-209 734.9 735 57.3
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 7.0e-198 695.7 593 65.1
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 5.3e-169 599.7 1376 32.8
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.1e-158 565.5 350 84.9
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.1e-155 555.4 435 69.2
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 4.0e-153 547.0 524 58.0
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 6.7e-148 529.6 375 73.9
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.6e-141 508.4 457 62.4
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 8.7e-140 502.7 442 62.9
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.6e-138 498.4 296 86.1
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 6.9e-137 493.0 1380 30.2
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 4.2e-134 483.8 1340 29.6
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.1e-126 459.1 408 63.5
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.0e-124 452.6 1322 27.2
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.3e-119 435.6 222 97.3
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.3e-119 435.6 244 90.2
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 9.4e-118 429.5 264 84.5
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.1e-113 416.0 853 36.2
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 3.8e-111 407.5 224 89.3
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 8.0e-109 399.8 391 58.1
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 6.8e-108 396.7 308 67.9
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 6.6e-95 353.6 187 94.1
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 7.5e-91 340.1 223 79.8
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 7.0e-81 307.0 223 68.6
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.3e-63 248.8 126 94.4
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 5.6e-54 217.6 140 82.1
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.5e-51 208.0 139 81.3
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 2.5e-46 192.2 195 55.9
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 2.1e-45 189.1 170 60.0
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 6.0e-40 171.0 174 56.9
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 2.8e-37 162.2 87 93.1
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 6.9e-36 157.5 106 79.2
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.1e-33 150.2 72 95.8
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 2.7e-32 145.6 216 43.1
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 1.0e-31 143.7 115 65.2
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 7.2e-25 120.9 174 42.5
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 8.7e-23 114.0 100 63.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.3e-21 110.2 64 85.9
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 8.2e-21 107.5 64 81.2
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.4e-20 106.7 106 59.4
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.5e-19 103.2 90 62.2
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 3.6e-16 92.0 128 48.4
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.4e-15 90.1 90 58.9
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 6.7e-15 87.8 77 58.4
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 3.7e-13 82.0 77 57.1
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 9.1e-12 77.4 281 27.4
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 8.5e-10 70.9 63 65.1
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 2.1e-08 66.2 61 65.6
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 2.7e-08 65.9 56 69.6
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 2.0e-06 59.7 33 87.9


User provided reference genes

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