Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 3.5e-157 558.1 261 100.0
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 2.0e-112 409.5 260 74.2
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 3.8e-111 405.2 259 72.6
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.9e-110 402.9 261 75.1
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 4.2e-110 401.7 258 73.6
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 4.2e-110 401.7 258 73.6
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 2.7e-109 399.1 253 73.5
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 1.1e-105 387.1 259 69.5
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 4.0e-105 385.2 259 70.3
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 6.9e-105 384.4 257 67.7
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.5e-104 383.3 249 73.5
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 4.5e-104 381.7 249 73.5
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 5.8e-104 381.3 257 66.5
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 7.6e-104 380.9 257 66.5
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.7e-103 379.8 257 70.0
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 3.8e-103 378.6 257 66.1
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 6.0e-101 371.3 259 69.1
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 3.0e-100 369.0 260 66.9
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 1.1e-99 367.1 253 64.4
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 1.5e-99 366.7 260 66.5
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 1.9e-99 366.3 238 71.0
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 2.5e-99 365.9 260 65.4
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 2.5e-99 365.9 259 66.0
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 2.5e-99 365.9 254 68.1
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 3.3e-99 365.5 259 66.8
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 4.3e-99 365.2 259 67.6
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 9.6e-99 364.0 260 66.5
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 1.3e-98 363.6 260 65.0
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 1.6e-98 363.2 259 65.3
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.1e-98 362.8 260 67.7
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 3.7e-98 362.1 260 67.3
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 6.2e-98 361.3 260 65.0
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 8.1e-98 360.9 259 66.4
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 3.1e-97 359.0 259 63.3
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 4.0e-97 358.6 259 64.1
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 6.9e-97 357.8 260 63.5
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 9.0e-97 357.5 254 67.7
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 3.4e-96 355.5 259 64.5
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 3.4e-96 355.5 259 64.5
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 7.6e-96 354.4 259 64.5
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 1.7e-95 353.2 254 66.5
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 6.5e-95 351.3 254 65.7
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 6.5e-95 351.3 260 63.5
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 8.4e-95 350.9 263 64.3
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.1e-94 350.5 239 66.9
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.4e-94 350.1 261 64.0
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.4e-94 350.1 259 64.5
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 7.1e-94 347.8 259 62.5
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 9.3e-94 347.4 257 63.0
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.2e-93 347.1 260 63.5
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 1.6e-93 346.7 260 62.3
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 1.6e-93 346.7 259 63.3
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 6.7e-92 341.3 241 67.6
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 8.7e-92 340.9 258 61.6
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 1.5e-91 340.1 258 61.2
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.5e-91 340.1 258 61.2
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.5e-91 340.1 258 61.2
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.3e-91 339.0 258 60.9
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 1.3e-90 337.0 258 61.2
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 2.8e-90 335.9 251 62.9
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 4.8e-90 335.1 258 62.0
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 4.8e-90 335.1 259 59.1
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 4.8e-90 335.1 254 62.2
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 6.3e-90 334.7 260 61.5
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 8.2e-90 334.3 261 63.2
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 5.3e-89 331.6 256 62.1
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 7.6e-88 327.8 260 59.2
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 1.3e-87 327.0 260 59.6
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 1.7e-87 326.6 254 61.0
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 1.7e-87 326.6 260 59.2
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 2.9e-87 325.9 260 58.8
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 5.0e-87 325.1 256 60.2
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 6.5e-87 324.7 251 61.0
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 5.5e-86 321.6 256 59.4
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 7.2e-86 321.2 256 59.4
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 9.3e-86 320.9 260 57.7
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 9.3e-86 320.9 261 59.4
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 9.3e-86 320.9 260 59.6
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 2.1e-85 319.7 260 58.1
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 3.9e-84 315.5 199 73.9
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.3e-82 310.5 260 56.2
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 1.3e-82 310.5 260 55.8
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.3e-82 310.5 256 58.2
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 1.6e-82 310.1 258 57.0
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 3.7e-82 308.9 242 61.2
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.1e-81 307.4 253 58.5
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 4.1e-81 305.4 262 55.3
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 3.4e-80 302.4 248 60.1
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.9e-78 296.6 248 58.9
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 1.9e-78 296.6 245 58.4
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 7.2e-78 294.7 248 58.9
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 7.2e-78 294.7 248 58.9
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 9.4e-78 294.3 240 59.6
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 1.6e-77 293.5 248 58.9
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 2.1e-77 293.1 248 58.5
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 2.1e-77 293.1 248 58.5
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 2.7e-77 292.7 258 55.4
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 2.3e-76 289.7 258 55.8
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 3.9e-76 288.9 248 56.0
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 6.7e-76 288.1 258 54.7
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 6.7e-76 288.1 264 53.8
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 4.3e-75 285.4 251 55.0
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.7e-74 283.5 248 55.2
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.7e-74 283.5 218 61.9
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 4.5e-72 275.4 218 61.5
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 4.5e-72 275.4 247 56.3
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.0e-71 274.2 243 57.6
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 3.2e-70 269.2 226 56.2
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 3.6e-69 265.8 238 54.6
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 2.3e-68 263.1 189 68.3
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 3.0e-68 262.7 248 52.8
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.6e-67 259.6 261 52.9
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 3.3e-67 259.2 195 62.1
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.1e-62 244.2 251 49.0
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.6e-61 240.4 259 47.5
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 6.7e-60 235.0 248 50.0
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 3.3e-59 232.6 184 63.0
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 9.7e-59 231.1 188 62.2
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 9.7e-59 231.1 249 48.2
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.6e-51 206.5 134 72.4
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.1e-49 199.1 223 50.2
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 5.9e-48 195.3 210 48.6
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 2.2e-47 193.4 154 63.6
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 2.5e-46 189.9 161 57.8
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.8e-44 183.7 151 58.9
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 4.0e-44 182.6 161 56.5
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 7.7e-40 168.3 261 37.9
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 1.3e-39 167.5 183 44.3
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.4e-33 147.5 112 63.4
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 1.1e-30 137.9 150 50.0
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.0e-25 118.6 160 41.9
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.4e-17 94.4 79 58.2
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 1.6e-16 90.9 75 57.3
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.3e-15 87.8 105 40.0
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 3.0e-15 86.7 83 50.6
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 3.9e-15 86.3 64 56.2
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 6.6e-15 85.5 67 52.2
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 1.1e-14 84.7 71 59.2
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 3.3e-14 83.2 49 71.4
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 4.1e-09 66.2 104 36.5


User provided reference genes

Program Settings