Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.5e-79 299.7 181 100.0
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 2.9e-54 215.7 178 66.9
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 5.7e-50 201.4 138 75.4
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.3e-49 200.3 145 73.8
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.8e-48 196.4 147 71.4
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.2e-47 193.7 152 70.4
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.6e-47 193.4 147 70.7
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.4e-43 180.3 147 64.6
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 2.3e-43 179.5 148 61.5
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 8.9e-43 177.6 136 71.3
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 7.5e-42 174.5 144 63.9
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 9.8e-42 174.1 144 65.3
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 2.8e-41 172.6 143 63.6
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 3.1e-40 169.1 146 63.7
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 2.3e-38 162.9 144 61.1
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.6e-36 155.6 147 57.1
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.3e-35 152.9 128 64.1
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.2e-34 150.6 147 56.5
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 2.0e-34 149.8 144 58.3
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 4.4e-34 148.7 151 55.6
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 9.8e-34 147.5 128 61.7
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 9.8e-34 147.5 135 60.7
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.3e-33 147.1 136 56.6
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.3e-33 147.1 145 55.2
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.7e-33 146.7 139 56.8
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 2.9e-33 146.0 146 53.4
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 3.7e-33 145.6 150 54.7
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 3.7e-33 145.6 136 57.4
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 6.4e-33 144.8 135 60.0
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.1e-32 144.1 132 59.1
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.9e-32 143.3 131 60.3
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.9e-32 143.3 133 57.9
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 4.1e-32 142.1 145 55.9
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 5.4e-32 141.7 145 53.1
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 9.2e-32 141.0 140 57.9
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.6e-31 140.2 147 55.8
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 4.6e-31 138.7 142 52.1
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.0e-30 137.5 114 64.0
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.3e-30 137.1 94 72.3
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.7e-30 136.7 140 57.1
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.3e-30 136.3 126 56.3
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.0e-30 136.0 134 53.0
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 5.0e-30 135.2 129 58.1
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 6.6e-30 134.8 145 55.9
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 8.6e-30 134.4 120 61.7
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 8.6e-30 134.4 137 57.7
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.1e-29 134.0 146 49.3
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.5e-29 133.7 136 54.4
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 2.5e-29 132.9 114 58.8
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.3e-29 132.5 140 56.4
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.2e-28 130.6 137 55.5
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 2.1e-28 129.8 131 55.7
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 4.7e-28 128.6 92 68.5
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 6.2e-28 128.3 137 51.8
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 6.2e-28 128.3 161 50.9
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.1e-27 127.5 118 60.2
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.1e-27 127.5 122 57.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 1.1e-27 127.5 129 51.2
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.1e-27 127.5 142 50.0
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.1e-27 127.5 140 52.9
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.4e-27 127.1 148 50.7
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.8e-27 126.7 146 52.7
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.8e-27 126.7 136 56.6
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 3.1e-27 125.9 149 51.7
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 5.2e-27 125.2 146 53.4
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 5.2e-27 125.2 138 54.3
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 5.2e-27 125.2 138 48.6
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 5.2e-27 125.2 135 54.1
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 8.9e-27 124.4 141 52.5
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.2e-26 124.0 126 54.8
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.5e-26 123.6 149 50.3
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 2.6e-26 122.9 138 51.4
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 3.4e-26 122.5 149 51.7
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.3e-25 120.6 129 48.1
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.3e-25 120.6 136 50.7
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.7e-25 120.2 147 46.9
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.7e-25 120.2 147 46.9
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.2e-25 119.8 140 50.0
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.2e-25 119.8 146 46.6
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.2e-25 119.8 140 46.4
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 3.7e-25 119.0 128 50.0
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 4.9e-25 118.6 140 52.1
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 4.9e-25 118.6 138 52.9
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 8.3e-25 117.9 137 51.1
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 8.3e-25 117.9 140 51.4
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 8.3e-25 117.9 149 46.3
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-24 117.5 139 51.8
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.4e-24 117.1 149 46.3
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.9e-24 116.7 135 45.2
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.9e-24 116.7 136 50.0
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 2.4e-24 116.3 94 59.6
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 2.4e-24 116.3 140 52.1
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 3.2e-24 115.9 132 48.5
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 5.4e-24 115.2 139 51.8
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 5.4e-24 115.2 139 51.8
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 7.0e-24 114.8 129 48.1
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.0e-24 114.8 147 51.7
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 7.0e-24 114.8 119 50.4
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-23 114.0 139 51.8
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.2e-23 114.0 139 51.8
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.6e-23 113.6 125 48.0
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.6e-23 113.6 156 46.2
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 3.5e-23 112.5 124 45.2
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 4.6e-23 112.1 132 47.0
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 4.6e-23 112.1 132 47.0
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 6.0e-23 111.7 89 61.8
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.3e-22 110.5 150 46.0
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.3e-22 110.5 146 45.2
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.7e-22 110.2 148 44.6
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.7e-22 110.2 107 51.4
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 2.3e-22 109.8 138 47.8
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 5.1e-22 108.6 90 58.9
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 5.1e-22 108.6 146 44.5
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 8.6e-22 107.8 99 53.5
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 8.6e-22 107.8 136 47.8
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-21 107.5 141 47.5
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-21 107.5 141 47.5
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 4.3e-21 105.5 138 46.4
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.3e-21 104.8 89 58.4
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 9.5e-21 104.4 141 46.8
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.6e-20 103.6 94 55.3
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 4.7e-20 102.1 142 45.8
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 6.2e-20 101.7 140 47.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 5.2e-19 98.6 162 40.7
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 6.8e-19 98.2 82 57.3
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.5e-18 97.1 139 47.5
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-18 97.1 139 47.5
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.5e-18 97.1 139 47.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.5e-18 97.1 127 46.5
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.5e-18 97.1 137 46.7
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 5.8e-18 95.1 135 40.0
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 9.9e-18 94.4 120 45.0
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 9.9e-18 94.4 105 51.4
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 2.2e-17 93.2 136 46.3
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 3.7e-17 92.4 134 37.3
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.9e-16 90.1 75 60.0
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.9e-16 90.1 148 39.9
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.4e-16 89.7 62 69.4
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 3.2e-16 89.4 121 48.8
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 3.2e-16 89.4 125 41.6
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 5.4e-16 88.6 93 54.8
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 7.1e-16 88.2 92 48.9
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.7e-15 86.3 94 46.8
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 2.3e-14 83.2 91 48.4
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 3.0e-14 82.8 114 42.1
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.6e-12 75.9 138 39.9
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 8.9e-11 71.2 93 44.1
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.5e-10 70.5 50 68.0
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 4.4e-10 68.9 90 42.2
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.9e-08 63.5 139 36.0
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 3.2e-08 62.8 136 33.8
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 4.2e-08 62.4 43 67.4
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 5.4e-08 62.0 69 46.4
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 6.0e-07 58.5 40 67.5


User provided reference genes

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