Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 4.7e-185 651.0 310 100.0
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 6.4e-134 481.1 290 79.3
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 3.5e-132 475.3 290 76.9
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 2.3e-131 472.6 289 77.5
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 1.5e-130 469.9 289 78.2
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.6e-129 465.3 291 75.3
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.1e-128 462.2 289 75.4
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 6.9e-128 461.1 290 73.8
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.9e-128 461.1 296 74.0
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.8e-126 455.3 289 74.4
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 6.4e-126 454.5 290 74.1
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.1e-125 453.8 290 74.5
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 7.1e-125 451.1 278 75.9
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 9.3e-125 450.7 289 75.1
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.2e-124 450.3 289 72.7
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.1e-124 449.5 290 73.8
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.7e-124 449.1 276 77.2
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 4.6e-124 448.4 289 73.4
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.0e-123 447.2 285 73.0
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.0e-123 447.2 290 74.8
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.0e-123 445.7 290 73.8
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.0e-123 445.7 330 66.4
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 3.9e-123 445.3 290 73.8
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.1e-123 444.9 294 72.4
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 8.7e-123 444.1 279 76.3
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.5e-122 443.4 291 74.2
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.9e-122 443.0 276 75.7
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.5e-122 442.6 289 73.4
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.5e-122 442.6 290 71.0
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.5e-122 442.6 285 74.0
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 3.3e-122 442.2 289 71.6
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.3e-122 441.8 290 74.1
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 5.6e-122 441.4 287 72.5
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 7.4e-122 441.0 275 76.4
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 9.6e-122 440.7 289 70.6
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.3e-121 440.3 291 71.1
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.8e-121 439.1 276 74.6
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.7e-121 438.7 290 73.4
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.8e-121 438.3 291 71.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.1e-120 437.2 290 69.3
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.1e-120 437.2 276 74.3
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.4e-120 436.8 290 69.3
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.4e-120 436.8 291 69.1
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 2.4e-120 436.0 290 69.7
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.4e-120 436.0 276 73.9
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.3e-120 434.9 317 67.2
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 6.9e-120 434.5 290 70.3
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 9.0e-120 434.1 276 73.6
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 9.0e-120 434.1 276 73.9
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.2e-119 433.7 278 73.7
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 3.4e-119 432.2 320 65.3
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.5e-119 431.8 277 73.3
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 5.8e-119 431.4 290 69.7
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 7.6e-119 431.0 289 70.9
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 9.9e-119 430.6 276 73.6
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.3e-118 430.3 290 69.3
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.7e-118 429.9 290 69.3
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.2e-118 429.5 276 73.6
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 2.2e-118 429.5 276 73.2
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 2.9e-118 429.1 284 71.5
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 8.4e-118 427.6 290 69.7
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 8.4e-118 427.6 290 69.7
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 8.4e-118 427.6 276 72.8
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 8.4e-118 427.6 276 71.0
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.1e-117 427.2 276 72.8
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.4e-117 426.8 289 70.2
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.4e-117 426.8 276 71.4
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.4e-117 426.0 290 68.6
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 2.4e-117 426.0 290 68.6
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 2.4e-117 426.0 290 68.6
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 3.2e-117 425.6 290 68.6
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.2e-117 425.2 290 68.6
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.2e-117 425.2 290 68.6
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 7.1e-117 424.5 282 70.9
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 9.3e-117 424.1 276 70.7
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 9.3e-117 424.1 276 70.3
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.2e-116 423.7 288 68.8
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.2e-116 423.7 276 71.0
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.2e-116 423.7 290 69.3
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 1.6e-116 423.3 276 71.4
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 2.1e-116 422.9 291 69.4
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.7e-116 422.5 278 70.9
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.7e-116 422.5 292 67.1
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 2.7e-116 422.5 276 72.1
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 3.5e-116 422.2 276 72.8
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 4.6e-116 421.8 301 68.1
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 4.6e-116 421.8 278 70.9
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 7.9e-116 421.0 277 72.9
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.3e-115 420.2 282 67.4
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.8e-115 419.9 286 69.9
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.8e-115 419.9 289 67.8
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.8e-115 419.9 282 67.4
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 3.0e-115 419.1 295 65.4
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.9e-115 418.7 278 71.6
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.1e-114 417.2 276 69.9
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.6e-113 413.3 289 69.2
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.4e-112 410.2 276 68.5
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 2.0e-111 406.4 285 65.6
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.4e-111 405.6 277 69.3
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.0e-110 404.1 277 69.0
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 8.4e-110 401.0 275 66.9
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.1e-109 400.6 288 63.9
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 2.5e-109 399.4 290 64.8
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 3.2e-109 399.1 309 61.8
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 5.5e-109 398.3 290 64.8
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 7.1e-109 397.9 289 67.5
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.0e-107 394.0 289 66.4
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.8e-107 393.3 289 63.7
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.0e-107 392.5 291 64.6
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.7e-107 391.3 289 63.7
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.9e-106 389.8 253 72.7
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 2.8e-105 386.0 232 80.6
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 2.4e-104 382.9 279 65.6
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 4.1e-104 382.1 278 65.8
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.9e-104 381.3 282 60.6
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.1e-101 374.0 305 59.3
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 4.2e-101 372.1 291 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.6e-100 370.2 283 61.5
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.1e-99 365.2 373 50.9
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 2.8e-97 359.4 233 73.8
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.8e-96 356.7 257 68.9
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.5e-94 348.2 293 56.7
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 5.5e-93 345.1 275 62.2
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 2.1e-92 343.2 236 66.9
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.0e-91 340.9 212 76.4
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.0e-91 339.3 277 57.4
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.1e-91 338.6 247 65.6
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.7e-90 334.3 238 63.0
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.9e-83 312.4 246 58.5
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.9e-77 293.5 277 56.7
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 9.4e-77 291.2 258 55.0
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.6e-71 273.9 190 68.4
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 2.0e-71 273.5 286 47.2
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.7e-63 246.5 157 74.5
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.9e-62 243.0 234 52.6
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.8e-57 226.5 170 66.5
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.7e-47 193.4 130 66.9
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.6e-46 188.7 113 75.2
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.5e-45 186.8 115 73.9
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 3.6e-36 156.4 102 65.7
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 3.7e-33 146.4 92 72.8
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.4e-27 127.1 175 45.7
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 9.9e-26 121.7 75 65.3
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 1.6e-23 114.4 64 81.2
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.1e-21 108.2 66 75.8
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 1.5e-18 97.8 132 42.4
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 7.6e-18 95.5 151 35.1
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.1e-16 91.7 77 57.1
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 9.6e-13 78.6 216 26.4
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 4.5e-10 69.7 205 29.3
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.5e-10 69.7 41 70.7
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 4.9e-09 66.2 189 28.0
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 6.4e-09 65.9 213 29.1
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.1e-08 65.1 208 25.5
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 4.6e-07 59.7 76 42.1
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 1.3e-06 58.2 213 30.5


User provided reference genes

Program Settings