Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A389T59 Lonicera japonica HOM05D001999 ORTHO05D001994 9.0e-50 199.9 98 100.0
Lj5C390T4 Lonicera japonica HOM05D001999 ORTHO05D001994 7.4e-36 153.7 88 86.4
Lj5C396G7 Lonicera japonica HOM05D001999 ORTHO05D001994 3.1e-34 148.3 85 89.4
CSS0044976 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 2.5e-31 138.7 89 77.5
CSS0046081 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 2.5e-31 138.7 89 77.5
Solyc01g099790.3 Solanum lycopersicum HOM05D001999 ORTHO05D001994 1.8e-29 132.5 89 75.3
Sopen01g043310 Solanum pennellii HOM05D001999 ORTHO05D001994 1.8e-29 132.5 89 75.3
PGSC0003DMG400024717 Solanum tuberosum HOM05D001999 ORTHO05D001994 1.8e-29 132.5 89 75.3
Nitab4.5_0010216g0020 Nicotiana tabacum HOM05D001999 ORTHO05D001994 2.3e-29 132.1 90 75.6
Lj5C391G14 Lonicera japonica HOM05D001999 ORTHO05D001994 5.1e-29 131.0 76 90.8
Actinidia35557 Actinidia chinensis HOM05D001999 ORTHO05D001994 6.7e-29 130.6 94 70.2
Dinv40334 Davidia involucrata HOM05D001999 ORTHO05D001994 8.8e-29 130.2 90 76.7
Cc02_g34200 Coffea canephora HOM05D001999 ORTHO05D001994 2.6e-28 128.6 91 72.5
Dinv30819 Davidia involucrata HOM05D001999 ORTHO05D001994 1.7e-27 125.9 89 73.0
Actinidia19777 Actinidia chinensis HOM05D001999 ORTHO05D001994 4.8e-27 124.4 93 71.0
AUR62005212 Chenopodium quinoa HOM05D001999 ORTHO05D001994 6.3e-27 124.0 85 71.8
AUR62000756 Chenopodium quinoa HOM05D001999 ORTHO05D001994 1.4e-26 122.9 85 70.6
Peaxi162Scf00037g01221 Petunia axillaris HOM05D001999 ORTHO05D001994 2.4e-26 122.1 90 71.1
Peaxi162Scf00071g00544 Petunia axillaris HOM05D001999 ORTHO05D001994 3.1e-26 121.7 94 68.1
CSS0018606 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 1.2e-25 119.8 89 68.5
CSS0039587 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 1.2e-25 119.8 89 68.5
EL10Ac4g09908 Beta vulgaris HOM05D001999 ORTHO05D001994 1.5e-25 119.4 85 71.8
Actinidia21498 Actinidia chinensis HOM05D001999 ORTHO05D001994 2.0e-25 119.0 89 71.9
QL03p020135 Quercus lobata HOM05D001999 ORTHO05D001994 4.5e-25 117.9 91 71.4
Gorai.007G300400 Gossypium raimondii HOM05D001999 ORTHO05D001994 1.7e-24 115.9 86 72.1
MD12G1212400 Malus domestica HOM05D001999 ORTHO05D001994 1.7e-24 115.9 95 69.5
Potri.013G015600 Populus trichocarpa HOM05D001999 ORTHO05D001994 2.2e-24 115.5 91 68.1
Duzib177G1061 Durio zibethinus HOM05D001999 ORTHO05D001994 3.8e-24 114.8 91 69.2
Cfa006634 Carpinus fangiana HOM05D001999 ORTHO05D001994 6.5e-24 114.0 87 71.3
Gohir.D13G180200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 6.5e-24 114.0 85 71.8
Gorai.013G205600 Gossypium raimondii HOM05D001999 ORTHO05D001994 6.5e-24 114.0 85 71.8
Prupe.6G320100 Prunus persica HOM05D001999 ORTHO05D001994 6.5e-24 114.0 91 68.1
Rhsim05G0138600 Rhododendron simsii HOM05D001999 ORTHO05D001994 6.5e-24 114.0 91 68.1
Thecc.05G313600 Theobroma cacao HOM05D001999 ORTHO05D001994 6.5e-24 114.0 86 70.9
vmacro19742 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 6.5e-24 114.0 91 67.0
CiPaw.08G161600 Carya illinoinensis HOM05D001999 ORTHO05D001994 1.9e-23 112.5 92 69.6
Haze_04134 Corylus avellana HOM05D001999 ORTHO05D001994 1.9e-23 112.5 87 70.1
Gohir.A13G174400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.9e-23 112.5 85 70.6
MD04G1199600 Malus domestica HOM05D001999 ORTHO05D001994 1.9e-23 112.5 91 67.0
Atru.chr2.75 Acer truncatum HOM05D001999 ORTHO05D001994 3.2e-23 111.7 81 72.8
RcHm_v2.0_Chr3g0455821 Rosa chinensis HOM05D001999 ORTHO05D001994 3.2e-23 111.7 91 65.9
Manes.08G117000 Manihot esculenta HOM05D001999 ORTHO05D001994 5.5e-23 110.9 90 67.8
Sabra13G0013700 Salix brachista HOM05D001999 ORTHO05D001994 5.5e-23 110.9 86 67.4
Sabra13G0017800 Salix brachista HOM05D001999 ORTHO05D001994 5.5e-23 110.9 86 67.4
FAN05G1277 Fragaria x ananassa HOM05D001999 ORTHO05D001994 7.2e-23 110.5 91 64.8
FAN09G2669 Fragaria x ananassa HOM05D001999 ORTHO05D001994 7.2e-23 110.5 91 64.8
FvH4_6g06620 Fragaria vesca HOM05D001999 ORTHO05D001994 9.4e-23 110.2 91 64.8
FAN02G3011 Fragaria x ananassa HOM05D001999 ORTHO05D001994 9.4e-23 110.2 91 64.8
FAN14G1734 Fragaria x ananassa HOM05D001999 ORTHO05D001994 9.4e-23 110.2 91 64.8
GSVIVG01031134001 Vitis vinifera HOM05D001999 ORTHO05D001994 1.2e-22 109.8 77 75.3
Potri.005G024700 Populus trichocarpa HOM05D001999 ORTHO05D001994 1.6e-22 109.4 86 67.4
CiPaw.07G022200 Carya illinoinensis HOM05D001999 ORTHO05D001994 2.1e-22 109.0 90 68.9
Hund07102 Selenicereus undatus HOM05D001999 ORTHO05D001994 2.7e-22 108.6 88 63.6
Lj9C146G5 Lonicera japonica HOM05D001999 ORTHO05D001994 6.1e-22 107.5 86 64.0
Ah.04g161170 Amaranthus hybridus HOM05D001999 ORTHO05D001994 2.3e-21 105.5 85 63.5
Ciclev10001227m.g Citrus clementina HOM05D001999 ORTHO05D001994 3.0e-21 105.1 96 61.5
Gohir.D11G278200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 3.0e-21 105.1 77 72.7
Glyma.10G151500 Glycine max HOM05D001999 ORTHO05D001994 5.2e-21 104.4 91 63.7
Sabra05G0030100 Salix brachista HOM05D001999 ORTHO05D001994 6.7e-21 104.0 86 64.0
TWI36G1062 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 6.7e-21 104.0 86 64.0
Gohir.A11G268300 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.1e-20 103.2 77 71.4
Duzib128G0926 Durio zibethinus HOM05D001999 ORTHO05D001994 3.3e-20 101.7 86 66.3
Glyma.19G232800 Glycine max HOM05D001999 ORTHO05D001994 5.7e-20 100.9 91 62.6
Phvul.007G197300 Phaseolus vulgaris HOM05D001999 ORTHO05D001994 5.7e-20 100.9 91 60.4
Cpa.g.sc327.4 Carica papaya HOM05D001999 ORTHO05D001994 7.4e-20 100.5 91 64.8
Glyma.03G235100 Glycine max HOM05D001999 ORTHO05D001994 1.7e-19 99.4 91 61.5
Lj5g0002371 Lotus japonicus HOM05D001999 ORTHO05D001994 1.7e-19 99.4 91 61.5
Lalb_Chr06g0167721 Lupinus albus HOM05D001999 ORTHO05D001994 1.7e-19 99.4 91 61.5
Manes.09G170900 Manihot esculenta HOM05D001999 ORTHO05D001994 2.8e-19 98.6 90 64.4
Sc16g0008800 Simmondsia chinensis HOM05D001999 ORTHO05D001994 2.8e-19 98.6 87 65.5
TWI56G0125 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 2.8e-19 98.6 86 62.8
Nitab4.5_0003844g0010 Nicotiana tabacum HOM05D001999 ORTHO05D001994 3.7e-19 98.2 87 65.5
Oeu043739.1 Olea europaea HOM05D001999 ORTHO05D001994 3.7e-19 98.2 91 60.4
PGR083G1363 Punica granatum HOM05D001999 ORTHO05D001994 3.7e-19 98.2 87 59.8
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 8.2e-19 97.1 85 63.5
Phvul.006G089200 Phaseolus vulgaris HOM05D001999 ORTHO05D001994 8.2e-19 97.1 89 61.8
Sed0011984 Sechium edule HOM05D001999 ORTHO05D001994 1.1e-18 96.7 97 56.7
arahy.Tifrunner.gnm1.ann1.AWF533 Arachis hypogaea HOM05D001999 ORTHO05D001994 1.4e-18 96.3 91 60.4
ClCG03G017310 Citrullus lanatus HOM05D001999 ORTHO05D001994 3.1e-18 95.1 94 57.4
CsaV3_1G038740 Cucumis sativus L. HOM05D001999 ORTHO05D001994 3.1e-18 95.1 94 57.4
arahy.Tifrunner.gnm1.ann1.J3YIB3 Arachis hypogaea HOM05D001999 ORTHO05D001994 4.1e-18 94.7 80 65.0
Psat0s1500g0040 Pisum sativum HOM05D001999 ORTHO05D001994 7.0e-18 94.0 91 56.0
VMungo0540G0393 Vigna mungo HOM05D001999 ORTHO05D001994 9.1e-18 93.6 86 60.5
TAR633G2461 Trochodendron aralioides HOM05D001999 ORTHO05D001994 1.2e-17 93.2 89 59.6
Gohir.A13G109800 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.6e-17 92.8 88 60.2
HanXRQChr05g0136211 Helianthus annuus HOM05D001999 ORTHO05D001994 1.6e-17 92.8 92 56.5
TPR.G17700 Trifolium pratense HOM05D001999 ORTHO05D001994 2.0e-17 92.4 91 56.0
Gorai.013G126200 Gossypium raimondii HOM05D001999 ORTHO05D001994 2.6e-17 92.0 91 59.3
Lalb_Chr21g0310571 Lupinus albus HOM05D001999 ORTHO05D001994 2.6e-17 92.0 91 58.2
TAR362G0861 Trochodendron aralioides HOM05D001999 ORTHO05D001994 2.6e-17 92.0 79 64.6
PGR031G0021 Punica granatum HOM05D001999 ORTHO05D001994 4.5e-17 91.3 86 61.6
TAR365G1043 Trochodendron aralioides HOM05D001999 ORTHO05D001994 5.9e-17 90.9 87 58.6
Gohir.D13G112400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 7.7e-17 90.5 93 58.1
Lj1g0010414 Lotus japonicus HOM05D001999 ORTHO05D001994 7.7e-17 90.5 86 59.3
Sed0027191 Sechium edule HOM05D001999 ORTHO05D001994 7.7e-17 90.5 83 61.4
Ca_05796_v3 Cicer arietinum L. HOM05D001999 ORTHO05D001994 1.0e-16 90.1 83 57.8
Lalb_Chr15g0077401 Lupinus albus HOM05D001999 ORTHO05D001994 1.0e-16 90.1 81 60.5
Oeu045901.1 Olea europaea HOM05D001999 ORTHO05D001994 1.0e-16 90.1 89 58.4
arahy.Tifrunner.gnm1.ann1.65M59H Arachis hypogaea HOM05D001999 ORTHO05D001994 1.3e-16 89.7 80 61.2
arahy.Tifrunner.gnm1.ann1.9XGC9Z Arachis hypogaea HOM05D001999 ORTHO05D001994 1.3e-16 89.7 80 61.2
Medtr1g083390 Medicago truncatula HOM05D001999 ORTHO05D001994 1.3e-16 89.7 91 54.9
DCAR_003361 Daucus carota HOM05D001999 ORTHO05D001994 1.7e-16 89.4 73 64.4
DCAR_022143 Daucus carota HOM05D001999 ORTHO05D001994 1.7e-16 89.4 82 58.5
Lalb_Chr18g0045791 Lupinus albus HOM05D001999 ORTHO05D001994 1.7e-16 89.4 85 58.8
Nn3g21468 Nelumbo nucifera HOM05D001999 ORTHO05D001994 2.2e-16 89.0 85 61.2
Ah.06g189850 Amaranthus hybridus HOM05D000145 ORTHO05D001994 3.8e-16 88.2 85 51.8
Ca_10133_v3 Cicer arietinum L. HOM05D001999 ORTHO05D001994 6.5e-16 87.4 82 61.0
Glyma.20G236700 Glycine max HOM05D001999 ORTHO05D001994 8.5e-16 87.0 74 63.5
HanXRQChr11g0339901 Helianthus annuus HOM05D001999 ORTHO05D001994 8.5e-16 87.0 93 57.0
Eucgr.B01912 Eucalyptus grandis HOM05D001999 ORTHO05D001994 1.1e-15 86.7 94 52.1
Hund21714 Selenicereus undatus HOM05D001999 ORTHO05D001994 1.9e-15 85.9 87 55.2
Nn4g25807 Nelumbo nucifera HOM05D001999 ORTHO05D001994 3.2e-15 85.1 92 56.5
TPR.G33183 Trifolium pratense HOM05D001999 ORTHO05D001994 4.2e-15 84.7 90 53.3
Lalb_Chr02g0148101 Lupinus albus HOM05D001999 ORTHO05D001994 5.5e-15 84.3 86 57.0
MSTRG.16390 Avicennia marina HOM05D001999 ORTHO05D001994 1.6e-14 82.8 93 48.4
ECA236G3557 Erigeron canadensis HOM05D001999 ORTHO05D001994 2.1e-14 82.4 83 57.8
Psat0s1830g0240 Pisum sativum HOM05D001999 ORTHO05D001994 4.7e-14 81.3 83 56.6
Aqoxy2G02961 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 1.4e-13 79.7 89 52.8
MSTRG.27977 Avicennia marina HOM05D001999 ORTHO05D001994 6.8e-13 77.4 76 56.6
Lj5A395G43 Lonicera japonica HOM05D001999 ORTHO05D001994 2.0e-12 75.9 40 90.0
TAR636G1732 Trochodendron aralioides HOM05D001999 ORTHO05D001994 2.0e-12 75.9 88 55.7
arahy.Tifrunner.gnm1.ann1.5G7CV2 Arachis hypogaea HOM05D001999 ORTHO05D001994 2.6e-12 75.5 91 48.4
Oeu010920.1 Olea europaea HOM05D001999 ORTHO05D001994 2.6e-12 75.5 75 58.7
Lsat_1_v5_gn_7_72040 Lactuca sativa HOM05D001999 ORTHO05D001994 3.4e-12 75.1 57 68.4
Aqoxy5G00748 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 4.4e-12 74.7 94 50.0
arahy.Tifrunner.gnm1.ann1.XS7LB4 Arachis hypogaea HOM05D001999 ORTHO05D001994 9.8e-12 73.6 91 50.5
CARHR079940 Cardamine hirsuta HOM05D001999 ORTHO05D001994 2.4e-10 68.9 94 52.1
CANSAT54G0146 Cannabis sativa HOM05D001999 ORTHO05D001994 3.1e-10 68.6 49 69.4
DCAR_022142 Daucus carota HOM05D001999 ORTHO05D001994 5.4e-10 67.8 74 51.4
Sp3g04390 Schrenkiella parvula HOM05D001999 ORTHO05D001994 5.4e-10 67.8 95 52.6
THA.LOC104818723 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 7.0e-10 67.4 94 48.9
Oeu043342.1 Olea europaea HOM05D001999 ORTHO05D001994 1.2e-09 66.6 85 49.4
Carub.0003s0484 Capsella rubella HOM05D001999 ORTHO05D001994 1.6e-09 66.2 94 51.1
AL3G16160 Arabidopsis lyrata HOM05D001999 ORTHO05D001994 2.0e-09 65.9 94 51.1
AT3G05545 Arabidopsis thaliana HOM05D001999 ORTHO05D001994 2.0e-09 65.9 94 51.1
Thhalv10020788m.g Eutrema salsugineum HOM05D001999 ORTHO05D001994 2.7e-09 65.5 94 50.0
SGA_v2.0_scaffold81G26096 Striga asiatica HOM05D001999 ORTHO05D001994 2.7e-09 65.5 95 44.2
BcaC09g47839 Brassica carinata HOM05D001999 ORTHO05D001994 5.9e-09 64.3 94 51.1
BolC1t05690H Brassica oleracea HOM05D001999 ORTHO05D001994 5.9e-09 64.3 94 51.1
BcaC05g30158 Brassica carinata HOM05D001999 ORTHO05D001994 7.7e-09 63.9 94 48.9
SGA_v2.0_scaffold80G25894 Striga asiatica HOM05D001999 ORTHO05D001994 7.7e-09 63.9 94 42.6
A03p34190 Brassica napus HOM05D001999 ORTHO05D001994 1.3e-08 63.2 89 49.4
C03p41580 Brassica napus HOM05D001999 ORTHO05D001994 1.3e-08 63.2 89 50.6
BraA03t12593Z Brassica rapa HOM05D001999 ORTHO05D001994 1.3e-08 63.2 89 49.4
BolC5t34826H Brassica oleracea HOM05D001999 ORTHO05D001994 5.0e-08 61.2 89 49.4
C05p61680 Brassica napus HOM05D000070 ORTHO05D004358 8.5e-08 60.5 90 50.0
BolC3t16439H Brassica oleracea HOM05D001999 ORTHO05D001994 8.5e-08 60.5 89 48.3
PSO170G6103 Papaver somniferum HOM05D001999 ORTHO05D001994 1.1e-07 60.1 84 46.4
PSO832G2288 Papaver somniferum HOM05D001999 ORTHO05D001994 1.1e-07 60.1 83 43.4
BcaC05g30112 Brassica carinata HOM05D001999 ORTHO05D001994 1.5e-07 59.7 89 51.7
BraA01t04476Z Brassica rapa HOM05D001999 ORTHO05D001994 1.5e-07 59.7 94 50.0
PSO210G5200 Papaver somniferum HOM05D001999 ORTHO05D001994 1.5e-07 59.7 83 42.2
BraA05t19075Z Brassica rapa HOM05D001999 ORTHO05D001994 2.5e-07 58.9 93 48.4
BcaB04g21442 Brassica carinata HOM05D001999 ORTHO05D001994 3.2e-07 58.5 89 49.4
PSO210G6703 Papaver somniferum HOM05D001999 ORTHO05D001994 3.2e-07 58.5 84 45.2
Medtr7g112740 Medicago truncatula HOM05D001999 ORTHO05D001994 5.5e-07 57.8 90 42.2
Duzib138G0033 Durio zibethinus HOM05D001999 ORTHO05D001994 9.4e-07 57.0 94 40.4
Dinv33049 Davidia involucrata HOM05D001999 ORTHO05D001994 1.2e-06 56.6 87 41.4
Duzib133G0338 Durio zibethinus HOM05D001999 ORTHO05D001994 2.1e-06 55.8 92 39.1


User provided reference genes

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