Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 2.5e-171 605.5 342 100.0
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 7.3e-147 524.2 321 91.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 2.8e-146 522.3 321 91.6
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 4.7e-146 521.5 325 91.7
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 6.2e-146 521.2 321 92.8
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.1e-145 520.4 323 91.6
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.5e-144 516.5 324 91.0
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 5.8e-144 514.6 324 89.8
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 8.3e-143 510.8 337 88.4
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 7.1e-142 507.7 321 88.5
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.2e-141 506.9 325 89.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.2e-141 506.9 325 89.5
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.2e-141 506.9 324 89.8
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.6e-141 506.5 321 89.7
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.6e-141 506.5 322 89.1
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 2.7e-141 505.8 321 88.2
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 3.5e-141 505.4 321 88.5
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 7.8e-141 504.2 321 83.8
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 7.8e-141 504.2 321 87.9
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 7.8e-141 504.2 321 87.9
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.0e-140 503.8 321 87.5
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.3e-140 503.4 322 87.6
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.3e-140 503.4 322 90.1
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.3e-140 503.4 321 88.2
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.3e-140 502.7 321 88.5
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 5.1e-140 501.5 321 88.2
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 6.6e-140 501.1 327 85.0
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 6.6e-140 501.1 321 87.9
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 6.6e-140 501.1 324 89.2
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.9e-139 499.6 321 88.2
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 1.9e-139 499.6 321 88.5
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 3.3e-139 498.8 321 86.6
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 9.5e-139 497.3 321 88.5
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 9.5e-139 497.3 321 86.6
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.2e-138 496.9 321 86.6
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 2.1e-138 496.1 321 86.9
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 8.1e-138 494.2 322 86.0
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 8.1e-138 494.2 321 86.9
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.4e-137 493.4 321 87.5
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.8e-137 493.0 333 84.7
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 2.4e-137 492.7 321 88.8
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 3.1e-137 492.3 321 86.0
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 5.2e-137 491.5 321 85.7
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 6.8e-137 491.1 321 85.4
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 6.8e-137 491.1 321 85.7
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 8.9e-137 490.7 321 79.4
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 8.9e-137 490.7 321 85.0
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.5e-136 490.0 321 87.2
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 4.4e-136 488.4 321 86.0
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 4.4e-136 488.4 321 86.0
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.7e-135 486.5 322 84.8
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 2.2e-135 486.1 322 82.9
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 2.2e-135 486.1 322 86.6
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 2.2e-135 486.1 321 85.0
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 8.4e-135 484.2 352 80.4
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 1.1e-134 483.8 322 84.2
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.9e-134 483.0 321 83.8
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 5.4e-134 481.5 322 82.0
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 5.4e-134 481.5 323 84.8
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 7.1e-134 481.1 321 84.4
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.6e-133 479.9 323 85.1
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 2.7e-133 479.2 322 81.7
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 2.7e-133 479.2 321 86.3
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 6.0e-133 478.0 321 84.1
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 6.0e-133 478.0 321 83.5
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 6.0e-133 478.0 323 84.5
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 7.8e-133 477.6 321 84.4
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 1.3e-132 476.9 321 84.1
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.3e-132 476.9 321 85.0
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.3e-132 476.9 321 85.0
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 3.0e-132 475.7 321 85.4
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.0e-132 475.7 321 83.2
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.0e-132 475.7 321 84.7
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.0e-132 475.7 321 84.7
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.5e-131 473.4 322 82.9
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 1.9e-131 473.0 322 82.9
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.5e-131 472.6 344 81.4
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 3.3e-131 472.2 349 78.5
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 5.6e-131 471.5 322 83.2
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 5.6e-131 471.5 322 83.2
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 7.3e-131 471.1 339 79.9
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 7.3e-131 471.1 339 79.9
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 9.6e-131 470.7 321 82.2
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.2e-130 470.3 321 82.9
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 2.8e-130 469.2 322 83.5
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.1e-129 467.2 321 83.2
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 1.4e-129 466.8 336 80.4
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 2.4e-129 466.1 305 86.9
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 4.0e-129 465.3 331 80.7
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 6.9e-129 464.5 329 81.2
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 6.9e-129 464.5 321 83.5
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.5e-128 463.4 321 83.8
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 4.4e-128 461.8 331 80.1
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 4.9e-127 458.4 324 78.7
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.4e-126 456.8 321 80.7
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 9.3e-126 454.1 321 81.0
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 9.3e-126 454.1 321 76.9
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 6.0e-125 451.4 333 80.2
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.5e-123 446.8 321 79.4
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 4.3e-123 445.3 361 73.4
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.6e-122 443.4 351 75.2
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-121 440.3 321 80.7
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.6e-117 426.8 350 74.3
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.6e-117 426.8 350 74.3
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 2.7e-117 426.0 356 71.3
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 5.1e-116 421.8 268 90.7
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 8.7e-116 421.0 321 76.9
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.1e-115 420.6 321 69.8
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 4.3e-115 418.7 322 78.0
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 6.2e-114 414.8 326 77.9
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 6.9e-113 411.4 274 87.6
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 4.0e-105 385.6 500 53.8
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 2.6e-104 382.9 321 73.8
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.5e-99 367.1 255 86.7
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 4.3e-99 365.5 322 72.7
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 1.1e-97 360.9 207 84.5
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.9e-96 355.1 323 71.5
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 6.5e-95 351.7 277 74.0
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.6e-85 320.5 321 64.5
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 1.4e-81 307.4 368 48.6
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 1.2e-80 304.3 321 62.3
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.6e-77 293.9 316 53.2
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 2.5e-70 270.0 131 96.2
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 3.3e-67 259.6 187 71.7
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 9.1e-65 251.5 211 77.3
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 8.3e-58 228.4 314 45.5
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.5e-51 207.6 110 87.3
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 6.8e-44 182.2 165 67.3
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.0e-40 170.6 91 93.4
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 6.2e-37 159.1 90 95.6
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 3.4e-35 153.3 90 91.1
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.0e-31 140.2 66 95.5
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 2.5e-22 110.5 55 94.5
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 4.7e-21 106.3 64 90.6
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 3.5e-16 90.1 199 29.1
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 2.5e-14 84.0 216 29.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 5.3e-12 76.3 39 87.2
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.6e-11 73.9 85 71.8
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 3.4e-11 73.6 41 87.8
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 1.4e-09 68.2 45 73.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 6.6e-07 59.3 48 60.4


User provided reference genes

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