Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0018163 Lotus japonicus HOM05D002186 ORTHO05D002225 4.7e-189 664.5 355 100.0
Glyma.17G009600 Glycine max HOM05D002186 ORTHO05D002225 4.9e-45 186.0 213 53.1
Glyma.09G008700 Glycine max HOM05D002186 ORTHO05D002225 8.1e-32 142.1 226 46.9
Ca_00708_v3 Cicer arietinum L. HOM05D000967 ORTHO05D000796 1.7e-29 134.4 226 42.0
Lj6g0027043 Lotus japonicus HOM05D002186 ORTHO05D002225 5.4e-28 129.4 212 44.3
TAR624G0352 Trochodendron aralioides HOM05D002186 ORTHO05D002225 2.7e-27 127.1 239 38.9
Phvul.006G144600 Phaseolus vulgaris HOM05D002186 ORTHO05D002225 1.5e-25 121.3 232 39.2
VMungo0540G0904 Vigna mungo HOM05D002186 ORTHO05D002225 1.9e-25 120.9 219 40.2
TPR.G13174 Trifolium pratense HOM05D002186 ORTHO05D002225 3.3e-25 120.2 230 41.3
Psat1g177320 Pisum sativum HOM05D002186 ORTHO05D002225 5.6e-25 119.4 227 40.1
Thecc.06G230800 Theobroma cacao HOM05D002186 ORTHO05D002225 4.0e-23 113.2 251 36.3
QL03p008302 Quercus lobata HOM05D002186 ORTHO05D002225 1.5e-22 111.3 265 35.1
Atru.chr1.2496 Acer truncatum HOM05D002186 ORTHO05D002225 2.6e-22 110.5 225 37.3
QL05p069972 Quercus lobata HOM05D002186 ORTHO05D002225 2.6e-22 110.5 243 34.2
PSO210G1922 Papaver somniferum HOM05D002186 ORTHO05D002225 4.4e-22 109.8 201 37.8
Duzib192G0729 Durio zibethinus HOM05D002186 ORTHO05D002225 9.9e-22 108.6 216 36.6
Dinv13953 Davidia involucrata HOM05D002186 ORTHO05D002225 3.8e-21 106.7 227 35.2
Oeu002753.1 Olea europaea HOM05D002186 ORTHO05D002225 3.8e-21 106.7 190 39.5
Aqoxy1G04163 Aquilegia oxysepala HOM05D002186 ORTHO05D002225 4.2e-20 103.2 224 36.2
PSO832G0516 Papaver somniferum HOM05D002186 ORTHO05D002225 5.4e-20 102.8 234 37.6
Eucgr.D01380 Eucalyptus grandis HOM05D002186 ORTHO05D002225 7.1e-20 102.4 197 39.6
TWI63G0207 Tripterygium wilfordii HOM05D002186 ORTHO05D002225 1.6e-19 101.3 187 35.3
GSVIVG01007242001 Vitis vinifera HOM05D002186 ORTHO05D002225 1.6e-19 101.3 199 36.7
Ciclev10017621m.g Citrus clementina HOM05D002186 ORTHO05D002225 2.1e-19 100.9 181 38.1
CsaV3_1G045860 Cucumis sativus L. HOM05D002186 ORTHO05D002225 2.1e-19 100.9 205 35.1
Actinidia26875 Actinidia chinensis HOM05D002186 ORTHO05D002225 2.7e-19 100.5 196 36.2
MELO3C021706.2 Cucumis melo HOM05D002186 ORTHO05D002225 7.9e-19 99.0 191 35.1
Dinv07382 Davidia involucrata HOM05D002186 ORTHO05D002225 1.0e-18 98.6 220 34.1
Duzib235G0519 Durio zibethinus HOM05D002186 ORTHO05D002225 1.7e-18 97.8 219 36.1
ECA234G1762 Erigeron canadensis HOM05D000014 ORTHO05D000093 3.0e-18 97.1 183 36.1
Manes.11G000100 Manihot esculenta HOM05D002186 ORTHO05D002225 3.0e-18 97.1 198 36.4
Potri.011G022000 Populus trichocarpa HOM05D002186 ORTHO05D002225 3.0e-18 97.1 181 37.0
GSVIVG01006684001 Vitis vinifera HOM05D002186 ORTHO05D002225 3.0e-18 97.1 185 38.4
PGR004G2124 Punica granatum HOM05D002186 ORTHO05D002225 8.7e-18 95.5 184 35.9
ClCG01G009910 Citrullus lanatus HOM05D002186 ORTHO05D002225 1.5e-17 94.7 231 33.8
SalBow8G0144 Salvia bowleyana HOM05D002186 ORTHO05D002225 2.5e-17 94.0 176 34.7
Gohir.A06G152300 Gossypium hirsutum HOM05D002186 ORTHO05D002225 9.6e-17 92.0 210 35.2
Glyma.07G264500 Glycine max HOM05D002186 ORTHO05D002225 1.3e-16 91.7 148 49.3
Cc09_g01050 Coffea canephora HOM05D002186 ORTHO05D002225 2.1e-16 90.9 196 33.7
Haze_06894 Corylus avellana HOM05D002186 ORTHO05D002225 2.1e-16 90.9 239 32.2
Gorai.010G185300 Gossypium raimondii HOM05D002186 ORTHO05D002225 2.1e-16 90.9 219 36.5
Lsat_1_v5_gn_4_62941 Lactuca sativa HOM05D002186 ORTHO05D002225 2.1e-16 90.9 183 36.6
Gohir.D06G158600 Gossypium hirsutum HOM05D002186 ORTHO05D002225 3.6e-16 90.1 210 37.6
Prupe.4G013100 Prunus persica HOM05D002186 ORTHO05D002225 6.2e-16 89.4 239 31.4
Oeu049722.1 Olea europaea HOM05D002186 ORTHO05D002225 1.1e-15 88.6 182 34.1
Migut.M01348 Erythranthe guttata HOM05D002186 ORTHO05D002225 4.0e-15 86.7 186 34.4
Peaxi162Scf00558g00012 Petunia axillaris HOM05D002186 ORTHO05D002225 4.0e-15 86.7 203 34.5
Atru.chr10.2307 Acer truncatum HOM05D002186 ORTHO05D002225 6.9e-15 85.9 196 37.8
Actinidia02329 Actinidia chinensis HOM05D002186 ORTHO05D003748 6.9e-15 85.9 199 31.7
Nitab4.5_0000143g0470 Nicotiana tabacum HOM05D002186 ORTHO05D002225 1.2e-14 85.1 187 35.3
HanXRQChr16g0516831 Helianthus annuus HOM05D002186 ORTHO05D002225 3.4e-14 83.6 172 33.1
DCAR_004869 Daucus carota HOM05D002186 ORTHO05D002225 7.6e-14 82.4 208 33.2
Medtr2g025170 Medicago truncatula HOM05D002186 ORTHO05D002225 7.6e-14 82.4 169 39.6
Solyc11g012010.2 Solanum lycopersicum HOM05D002186 ORTHO05D002225 9.9e-14 82.0 226 34.1
arahy.Tifrunner.gnm1.ann1.L384WR Arachis hypogaea HOM05D002186 ORTHO05D002225 3.8e-13 80.1 227 28.6
arahy.Tifrunner.gnm1.ann1.RP0H42 Arachis hypogaea HOM05D002186 ORTHO05D002225 6.4e-13 79.3 238 31.1
GSVIVG01004747001 Vitis vinifera HOM05D002186 ORTHO05D002225 8.4e-13 79.0 171 36.3
Aa31LG8G11940 Aethionema arabicum HOM05D002186 ORTHO05D002225 1.1e-12 78.6 192 31.2
Lj3g0021651 Lotus japonicus HOM05D002186 ORTHO05D002225 5.5e-12 76.3 222 32.0
Lalb_Chr01g0022231 Lupinus albus HOM05D002186 ORTHO05D002225 1.6e-11 74.7 226 29.2
Psat3g148160 Pisum sativum HOM05D002186 ORTHO05D002225 1.6e-11 74.7 229 31.0
ClCG09G008810 Citrullus lanatus HOM05D002186 ORTHO05D002225 2.1e-11 74.3 214 29.9
Medtr8g012960 Medicago truncatula HOM05D002186 ORTHO05D002225 2.7e-11 73.9 250 29.2
CsaV3_7G026140 Cucumis sativus L. HOM05D002186 ORTHO05D002225 4.6e-11 73.2 194 33.0
Lalb_Chr12g0209931 Lupinus albus HOM05D002186 ORTHO05D002225 4.6e-11 73.2 210 30.0
AL3G40780 Arabidopsis lyrata HOM05D002186 ORTHO05D002225 1.0e-10 72.0 193 29.5
THA.LOC104821655 Tarenaya hassleriana HOM05D002186 ORTHO05D002225 1.0e-10 72.0 214 28.5
TPR.G17116 Trifolium pratense HOM05D002186 ORTHO05D002225 1.0e-10 72.0 243 28.8
AT3G25070 Arabidopsis thaliana HOM05D002186 ORTHO05D002225 1.3e-10 71.6 211 29.4
Medtr7g056147 Medicago truncatula HOM05D002186 ORTHO05D002225 1.3e-10 71.6 215 29.8
Sed0008860 Sechium edule HOM05D002186 ORTHO05D002225 1.3e-10 71.6 197 32.0
VMungo0331G2000 Vigna mungo HOM05D002186 ORTHO05D002225 1.3e-10 71.6 216 29.6
Aa31LG9G4910 Aethionema arabicum HOM05D002186 ORTHO05D002225 1.8e-10 71.2 177 32.2
Glyma.16G090700 Glycine max HOM05D002186 ORTHO05D002225 1.8e-10 71.2 210 31.0
Phvul.010G021200 Phaseolus vulgaris HOM05D002186 ORTHO05D002225 1.8e-10 71.2 216 30.6
TPR.G6437 Trifolium pratense HOM05D002186 ORTHO05D002225 3.0e-10 70.5 233 28.3
ATR1128G106 Amborella trichopoda HOM05D002186 ORTHO05D002225 3.9e-10 70.1 206 30.1
BcaB08g34432 Brassica carinata HOM05D002186 ORTHO05D002225 5.1e-10 69.7 214 28.5
TWI36G0241 Tripterygium wilfordii HOM05D002186 ORTHO05D002225 5.1e-10 69.7 233 30.0
CSS0001825 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 6.7e-10 69.3 126 38.9
Ca_23229_v3 Cicer arietinum L. HOM05D002186 ORTHO05D002225 6.7e-10 69.3 221 28.5
Glyma.03G084000 Glycine max HOM05D002186 ORTHO05D002225 6.7e-10 69.3 210 30.5
Potri.004G002500 Populus trichocarpa HOM05D002186 ORTHO05D002225 6.7e-10 69.3 149 36.2
Prupe.8G199800 Prunus persica HOM05D002186 ORTHO05D002225 8.7e-10 68.9 239 26.4
Carub.0003s2542 Capsella rubella HOM05D002186 ORTHO05D002225 1.1e-09 68.6 194 29.9
Nitab4.5_0008794g0020 Nicotiana tabacum HOM05D002186 ORTHO05D002225 1.1e-09 68.6 166 32.5
Manes.12G046800 Manihot esculenta HOM05D002186 ORTHO05D002225 1.5e-09 68.2 270 27.0
CSS0016957 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 1.9e-09 67.8 252 28.6
CSS0037554 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 1.9e-09 67.8 252 28.6
CiPaw.02G022900 Carya illinoinensis HOM05D002186 ORTHO05D002225 1.9e-09 67.8 210 28.6
Ca_06555_v3 Cicer arietinum L. HOM05D002186 ORTHO05D002225 1.9e-09 67.8 239 27.2
Gorai.011G011000 Gossypium raimondii HOM05D002186 ORTHO05D002225 2.5e-09 67.4 214 29.0
Sed0020018 Sechium edule HOM05D002186 ORTHO05D002225 2.5e-09 67.4 214 28.5
RcHm_v2.0_Chr6g0284211 Rosa chinensis HOM05D002186 ORTHO05D002225 3.3e-09 67.0 216 27.3
Actinidia09472 Actinidia chinensis HOM05D002186 ORTHO05D002225 4.3e-09 66.6 233 29.2
Manes.13G048800 Manihot esculenta HOM05D002186 ORTHO05D002225 4.3e-09 66.6 253 26.9
Psat0s3432g0160 Pisum sativum HOM05D002186 ORTHO05D002225 4.3e-09 66.6 249 28.9
Sed0022841 Sechium edule HOM05D002186 ORTHO05D002225 4.3e-09 66.6 202 31.2
Thecc.01G221600 Theobroma cacao HOM05D002186 ORTHO05D002225 4.3e-09 66.6 268 26.5
BcaC06g35778 Brassica carinata HOM05D002186 ORTHO05D002225 5.6e-09 66.2 204 29.9
BolC7t41569H Brassica oleracea HOM05D002186 ORTHO05D002225 5.6e-09 66.2 204 29.9
BraA03t13533Z Brassica rapa HOM05D002186 ORTHO05D002225 5.6e-09 66.2 198 31.3
CARHR101410 Cardamine hirsuta HOM05D002186 ORTHO05D002225 5.6e-09 66.2 209 29.2
MD10G1160600 Malus domestica HOM05D002186 ORTHO05D002225 5.6e-09 66.2 238 29.4
Sabra02G0186700 Salix brachista HOM05D002186 ORTHO05D002225 5.6e-09 66.2 235 28.5
CANSAT01G1734 Cannabis sativa HOM05D002186 ORTHO05D002225 7.4e-09 65.9 218 29.4
FAN15G3260 Fragaria x ananassa HOM05D002186 ORTHO05D002225 7.4e-09 65.9 215 25.6
FAN24G2024 Fragaria x ananassa HOM05D002186 ORTHO05D002225 7.4e-09 65.9 215 26.0
FAN27G2350 Fragaria x ananassa HOM05D002186 ORTHO05D002225 7.4e-09 65.9 215 25.6
BcaC01g03246 Brassica carinata HOM05D002186 ORTHO05D002225 9.6e-09 65.5 200 30.5
A03p44020 Brassica napus HOM05D002186 ORTHO05D002225 9.6e-09 65.5 207 30.4
FvH4_2g18650 Fragaria vesca HOM05D002186 ORTHO05D002225 9.6e-09 65.5 215 26.0
Lalb_Chr19g0125811 Lupinus albus HOM05D002186 ORTHO05D002225 9.6e-09 65.5 227 28.6
CiPaw.01G049400 Carya illinoinensis HOM05D002186 ORTHO05D002225 1.3e-08 65.1 254 26.4
Gohir.A10G010350 Gossypium hirsutum HOM05D002186 ORTHO05D002225 1.3e-08 65.1 206 30.6
Nitab4.5_0003020g0010 Nicotiana tabacum HOM05D002186 ORTHO05D002225 1.3e-08 65.1 166 28.9
Sp3g22670 Schrenkiella parvula HOM05D002186 ORTHO05D002225 1.3e-08 65.1 209 28.2
TWI18G0470 Tripterygium wilfordii HOM05D002186 ORTHO05D002225 1.3e-08 65.1 223 27.4
BcaB06g26730 Brassica carinata HOM05D002186 ORTHO05D002225 1.6e-08 64.7 184 29.3
C03p54390 Brassica napus HOM05D002186 ORTHO05D002225 1.6e-08 64.7 211 29.9
BolC3t17726H Brassica oleracea HOM05D002186 ORTHO05D002225 1.6e-08 64.7 211 29.9
Potri.002G245400 Populus trichocarpa HOM05D002186 ORTHO05D002225 1.6e-08 64.7 226 27.4
THA.LOC104808790 Tarenaya hassleriana HOM05D002186 ORTHO05D002225 1.6e-08 64.7 175 31.4
C07p11000 Brassica napus HOM05D002186 ORTHO05D002225 2.1e-08 64.3 204 29.4
HanXRQChr10g0279471 Helianthus annuus HOM05D002186 ORTHO05D002225 2.1e-08 64.3 223 28.3
SGA_v2.0_scaffold6G03221 Striga asiatica HOM05D002186 ORTHO05D002225 2.1e-08 64.3 207 30.4
TAR629G2023 Trochodendron aralioides HOM05D002186 ORTHO05D002225 2.8e-08 63.9 68 50.0
CANSAT56G1175 Cannabis sativa HOM05D002186 ORTHO05D002225 3.7e-08 63.5 253 26.5
MBI11_g07441_MAGBIO Magnolia biondii HOM05D002186 ORTHO05D002225 3.7e-08 63.5 261 26.8
QL09p052490 Quercus lobata HOM05D002186 ORTHO05D002225 3.7e-08 63.5 253 25.7
Thhalv10002991m.g Eutrema salsugineum HOM05D002186 ORTHO05D002225 4.8e-08 63.2 247 28.7
Gorai.001G232400 Gossypium raimondii HOM05D002186 ORTHO05D002225 6.2e-08 62.8 266 24.4
QL09p051777 Quercus lobata HOM05D002186 ORTHO05D002225 6.2e-08 62.8 253 25.3
TAR633G2519 Trochodendron aralioides HOM05D002186 ORTHO05D002225 6.2e-08 62.8 41 61.0
MSTRG.17997 Avicennia marina HOM05D002186 ORTHO05D002225 8.1e-08 62.4 202 27.2
CAN.G874.2 Capsicum annuum HOM05D002186 ORTHO05D002225 8.1e-08 62.4 198 28.3
Haze_15037 Corylus avellana HOM05D002186 ORTHO05D002225 8.1e-08 62.4 236 28.8
Solyc12g098440.2 Solanum lycopersicum HOM05D002186 ORTHO05D002225 8.1e-08 62.4 292 24.3
Migut.N00628 Erythranthe guttata HOM05D002186 ORTHO05D002225 1.1e-07 62.0 211 27.0
Gohir.A08G195300 Gossypium hirsutum HOM05D002186 ORTHO05D002225 1.4e-07 61.6 220 27.3
Nn3g20042 Nelumbo nucifera HOM05D002186 ORTHO05D002225 1.4e-07 61.6 245 28.6
Sopen12g033220 Solanum pennellii HOM05D002186 ORTHO05D002225 1.4e-07 61.6 292 24.3
Cc01_g16790 Coffea canephora HOM05D002186 ORTHO05D002225 1.8e-07 61.2 218 28.0
Oeu031828.1 Olea europaea HOM05D002186 ORTHO05D002225 1.8e-07 61.2 236 26.3
Ciclev10021726m.g Citrus clementina HOM05D002186 ORTHO05D002225 2.4e-07 60.8 229 27.1
MD05G1172400 Malus domestica HOM05D002186 ORTHO05D002225 2.4e-07 60.8 240 27.1
Gohir.D07G206100 Gossypium hirsutum HOM05D002186 ORTHO05D002225 3.1e-07 60.5 266 26.3
Nn1g07944 Nelumbo nucifera HOM05D002186 ORTHO05D002225 3.1e-07 60.5 242 28.1
Sopen09g022570 Solanum pennellii HOM05D002186 ORTHO05D002225 4.0e-07 60.1 220 27.7
arahy.Tifrunner.gnm1.ann1.I3NQHY Arachis hypogaea HOM05D000967 ORTHO05D000796 5.3e-07 59.7 44 59.1
HanXRQChr16g0498991 Helianthus annuus HOM05D002186 ORTHO05D002225 5.3e-07 59.7 209 26.8
MELO3C021057.2 Cucumis melo HOM05D002186 ORTHO05D002225 6.9e-07 59.3 225 26.7
PSO063G5024 Papaver somniferum HOM05D002186 ORTHO05D002225 6.9e-07 59.3 218 26.6
PGSC0003DMG400004571 Solanum tuberosum HOM05D002186 ORTHO05D002225 6.9e-07 59.3 290 24.1
TAR636G0289 Trochodendron aralioides HOM05D002186 ORTHO05D002225 6.9e-07 59.3 250 27.6
PSO017G2014 Papaver somniferum HOM05D002186 ORTHO05D002225 9.0e-07 58.9 228 25.4
CAN.G1186.12 Capsicum annuum HOM05D002186 ORTHO05D002225 1.2e-06 58.5 257 26.1
COL.COLO4_15629 Corchorus olitorius HOM05D002186 ORTHO05D002225 1.2e-06 58.5 246 26.8
Sopen06g034760 Solanum pennellii HOM05D002186 ORTHO05D002225 1.2e-06 58.5 215 26.5
PGSC0003DMG400020099 Solanum tuberosum HOM05D002186 ORTHO05D002225 1.2e-06 58.5 215 26.5
Actinidia31462 Actinidia chinensis HOM05D002186 ORTHO05D002225 1.5e-06 58.2 253 26.1
Lj2A1127T51 Lonicera japonica HOM05D002186 ORTHO05D002225 1.5e-06 58.2 225 24.9
Solyc06g083390.4 Solanum lycopersicum HOM05D002186 ORTHO05D002225 1.5e-06 58.2 214 25.2
Atru.chr6.1419 Acer truncatum HOM05D002186 ORTHO05D002225 2.0e-06 57.8 252 26.2
DCAR_004726 Daucus carota HOM05D002186 ORTHO05D002225 2.0e-06 57.8 220 26.4
ECA247G1857 Erigeron canadensis HOM05D002186 ORTHO05D002225 2.0e-06 57.8 224 27.7
MBI19_g29455_MAGBIO Magnolia biondii HOM05D002186 ORTHO05D002225 2.0e-06 57.8 335 23.0
Solyc09g059430.3 Solanum lycopersicum HOM05D002186 ORTHO05D002225 2.0e-06 57.8 220 27.3
HPP92_008217 Vanilla planifolia HOM05D002186 ORTHO05D002225 2.0e-06 57.8 233 27.5
EL10Ac3g07473 Beta vulgaris HOM05D002186 ORTHO05D002225 2.6e-06 57.4 213 27.7
Lsat_1_v5_gn_9_15261 Lactuca sativa HOM05D002186 ORTHO05D002225 2.6e-06 57.4 257 26.8
Rhsim01G0254100 Rhododendron simsii HOM05D002186 ORTHO05D002225 2.6e-06 57.4 254 26.4
TAR362G1062 Trochodendron aralioides HOM05D002186 ORTHO05D002225 2.6e-06 57.4 261 28.4
Ah.08g214560 Amaranthus hybridus HOM05D012619 ORTHO05D015274 3.4e-06 57.0 212 29.7
MSTRG.20966 Avicennia marina HOM05D002186 ORTHO05D002225 3.4e-06 57.0 217 27.2
Duzib133G1090 Durio zibethinus HOM05D002186 ORTHO05D002225 3.4e-06 57.0 261 25.7
Duzib138G0625 Durio zibethinus HOM05D002186 ORTHO05D002225 3.4e-06 57.0 262 25.2
Gohir.A07G199700 Gossypium hirsutum HOM05D002186 ORTHO05D002225 3.4e-06 57.0 266 26.7
Oeu037768.2 Olea europaea HOM05D002186 ORTHO05D002225 3.4e-06 57.0 168 31.5
Duzib211G0360 Durio zibethinus HOM05D002186 ORTHO05D002225 4.5e-06 56.6 263 25.9
Eucgr.H00779 Eucalyptus grandis HOM05D002186 ORTHO05D002225 4.5e-06 56.6 225 26.2
Gohir.D08G212670 Gossypium hirsutum HOM05D002186 ORTHO05D002225 4.5e-06 56.6 220 27.3
PGSC0003DMG400027945 Solanum tuberosum HOM05D002186 ORTHO05D002225 4.5e-06 56.6 224 27.2
AUR62018576 Chenopodium quinoa HOM05D002186 ORTHO05D002225 5.8e-06 56.2 213 29.1
Gorai.004G226600 Gossypium raimondii HOM05D002186 ORTHO05D002225 5.8e-06 56.2 220 26.8
CAN.G767.9 Capsicum annuum HOM05D002186 ORTHO05D002225 1.0e-05 55.5 292 24.0
Eucgr.K02142 Eucalyptus grandis HOM05D002186 ORTHO05D002225 1.0e-05 55.5 227 24.7


User provided reference genes

Program Settings