Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.2e-120 436.4 209 100.0
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 1.4e-84 316.6 199 72.9
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.6e-83 313.2 215 68.8
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.6e-83 313.2 215 68.8
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 2.7e-83 312.4 215 68.8
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.3e-82 310.1 215 70.7
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 8.6e-82 307.4 215 70.2
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 3.6e-80 302.0 196 74.5
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 2.0e-78 296.2 197 72.6
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.7e-75 285.8 193 69.9
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.5e-75 285.4 193 71.0
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 1.1e-73 280.4 201 66.2
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.1e-73 280.4 210 65.7
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 3.3e-73 278.9 192 69.8
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 3.6e-72 275.4 204 65.2
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 1.8e-71 273.1 210 63.8
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 6.8e-71 271.2 200 65.0
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 1.2e-70 270.4 193 66.8
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.2e-70 270.4 202 62.9
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 3.4e-70 268.9 209 62.7
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 9.8e-70 267.3 209 63.2
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.7e-69 266.5 209 63.2
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 2.9e-69 265.8 209 62.7
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 8.3e-69 264.2 187 65.2
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.1e-68 263.8 193 64.2
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 1.4e-68 263.5 209 61.7
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.4e-68 262.7 202 60.9
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 9.2e-68 260.8 202 62.4
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 2.0e-67 259.6 213 59.2
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 2.7e-67 259.2 193 60.6
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 3.5e-67 258.8 204 61.3
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 4.6e-67 258.5 193 63.7
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 4.6e-67 258.5 209 61.2
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 4.6e-67 258.5 195 65.1
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 4.6e-67 258.5 205 61.5
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.3e-66 256.9 193 63.7
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.3e-66 256.1 194 64.4
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 3.0e-66 255.8 204 57.8
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.1e-65 253.8 193 63.7
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 3.3e-65 252.3 193 62.2
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 4.3e-65 251.9 193 63.2
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 4.3e-65 251.9 193 62.7
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 5.6e-65 251.5 223 56.1
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 5.6e-65 251.5 203 62.1
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 7.3e-65 251.1 203 61.1
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.2e-64 250.4 208 54.8
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 2.8e-64 249.2 236 54.2
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 3.6e-64 248.8 193 64.2
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 6.2e-64 248.1 203 54.2
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 6.2e-64 248.1 203 61.6
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 8.0e-64 247.7 204 54.9
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 8.0e-64 247.7 204 54.9
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.1e-63 247.3 203 58.6
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 2.3e-63 246.1 193 58.0
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 3.1e-63 245.7 203 54.7
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 4.0e-63 245.4 199 60.3
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 6.8e-63 244.6 193 59.1
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 6.8e-63 244.6 209 56.9
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 8.9e-63 244.2 200 56.0
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 8.9e-63 244.2 203 61.1
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 1.5e-62 243.4 224 54.0
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 5.8e-62 241.5 205 54.1
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 7.5e-62 241.1 204 54.9
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 9.8e-62 240.7 193 60.6
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 9.8e-62 240.7 193 60.1
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 9.8e-62 240.7 233 55.4
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.9e-61 239.2 193 60.1
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 4.9e-61 238.4 223 54.3
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 8.3e-61 237.7 227 54.2
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 8.3e-61 237.7 227 54.2
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 3.2e-60 235.7 193 59.6
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 5.4e-60 235.0 200 59.5
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.2e-59 233.8 178 62.4
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 1.2e-59 233.8 192 61.5
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.2e-59 233.8 205 52.7
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 1.6e-59 233.4 239 52.7
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.6e-59 231.9 219 55.3
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 7.8e-59 231.1 206 52.9
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 1.0e-58 230.7 193 58.5
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.7e-58 229.9 179 63.1
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 6.6e-58 228.0 212 51.4
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 1.5e-57 226.9 206 50.5
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.6e-56 223.4 152 71.7
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 3.6e-56 222.2 183 55.2
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 6.2e-56 221.5 194 57.7
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 8.1e-56 221.1 179 59.2
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 8.1e-56 221.1 222 50.5
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.8e-55 219.9 187 60.4
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 3.1e-55 219.2 175 57.7
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 5.2e-55 218.4 185 59.5
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 6.8e-55 218.0 193 51.8
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 2.0e-54 216.5 235 44.3
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 4.4e-54 215.3 193 54.9
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 7.5e-54 214.5 193 54.4
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 3.7e-53 212.2 208 51.9
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 8.3e-53 211.1 206 50.0
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 1.9e-52 209.9 193 58.5
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.2e-52 209.1 202 48.5
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 7.1e-52 208.0 193 53.4
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 1.6e-51 206.8 194 49.5
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 3.0e-50 202.6 179 57.0
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 3.3e-49 199.1 193 45.6
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 5.6e-49 198.4 194 48.5
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 1.4e-47 193.7 193 52.8
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 3.1e-47 192.6 260 40.8
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 8.9e-47 191.0 165 56.4
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 2.7e-43 179.5 163 56.4
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.9e-41 173.3 134 67.2
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.1e-40 169.9 194 44.8
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 3.1e-39 166.0 96 83.3
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 4.0e-39 165.6 206 42.2
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.2e-38 164.1 120 58.3
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 1.7e-37 160.2 104 76.9
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 8.4e-37 157.9 109 64.2
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.7e-35 152.9 193 45.1
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 1.0e-34 151.0 122 63.9
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 2.3e-34 149.8 126 54.8
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 2.3e-34 149.8 112 62.5
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 3.0e-34 149.4 205 38.5
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 8.7e-34 147.9 128 52.3
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.5e-33 147.1 139 55.4
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.3e-29 134.0 98 66.3
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.4e-28 130.6 200 41.0
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.4e-28 129.8 101 66.3
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.2e-27 127.5 98 63.3
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.5e-25 120.6 80 63.8
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 3.7e-24 115.9 135 47.4
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.4e-23 113.2 98 63.3
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 9.0e-23 111.3 68 79.4
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 1.3e-21 107.5 70 72.9
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.2e-20 102.8 103 45.6
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 9.3e-20 101.3 101 51.5
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.3e-20 101.3 100 59.0
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 1.0e-18 97.8 63 71.4
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.1e-18 95.5 71 67.6
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 9.6e-17 91.3 111 44.1
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 1.6e-16 90.5 73 57.5
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.4e-15 87.4 62 61.3
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.8e-15 87.0 64 64.1
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 4.5e-14 82.4 175 31.4
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.7e-13 80.5 46 69.6
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 5.0e-13 79.0 108 47.2
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 1.6e-11 73.9 66 51.5
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.0e-10 71.2 48 60.4
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 1.9e-09 67.0 38 71.1
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 2.5e-09 66.6 118 33.1
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 5.7e-09 65.5 43 62.8
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.7e-08 62.8 61 54.1
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.4e-07 60.1 37 75.7
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 5.3e-07 58.9 126 27.8
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 6.9e-07 58.5 41 58.5
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 9.0e-07 58.2 41 58.5
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 1.2e-06 57.8 47 53.2
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 4.5e-06 55.8 43 55.8
AL8G35510 Arabidopsis lyrata HOM05D004044 ORTHO05D004841 7.7e-06 55.1 122 28.7
Carub.0008s1977 Capsella rubella HOM05D004044 ORTHO05D004841 7.7e-06 55.1 122 28.7
CARHR285370 Cardamine hirsuta HOM05D004044 ORTHO05D004841 1.0e-05 54.7 122 27.9
Thhalv10014822m.g Eutrema salsugineum HOM05D004044 ORTHO05D004841 1.0e-05 54.7 122 27.9
FvH4_4g02510 Fragaria vesca HOM05D002720 ORTHO05D002901 1.0e-05 54.7 122 26.2
FAN12G2349 Fragaria x ananassa HOM05D002720 ORTHO05D002901 1.0e-05 54.7 122 26.2
Sp6g20810 Schrenkiella parvula HOM05D004044 ORTHO05D004841 1.0e-05 54.7 122 27.9


User provided reference genes

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