Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 8.2e-289 996.5 559 100.0
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 6.0e-215 751.1 612 72.7
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 9.9e-202 707.2 573 74.5
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 9.9e-202 707.2 573 74.7
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 6.4e-201 704.5 581 72.6
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.1e-197 693.7 640 67.5
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 7.1e-192 674.5 677 62.3
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 2.7e-191 672.5 538 74.7
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.8e-190 669.8 677 62.9
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 2.7e-175 619.4 543 70.2
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 5.9e-170 601.7 578 65.2
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.7e-169 600.1 576 63.4
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 3.7e-164 582.4 566 60.4
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 9.4e-160 567.8 612 54.2
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 1.2e-159 567.4 579 58.2
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 2.1e-159 566.6 543 63.2
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 6.1e-159 565.1 393 83.0
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 3.0e-158 562.8 677 56.7
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 2.0e-157 560.1 589 58.2
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 2.6e-157 559.7 567 60.7
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 2.2e-156 556.6 570 59.8
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 8.5e-153 544.7 579 56.1
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 2.5e-152 543.1 649 54.2
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 3.2e-152 542.7 577 56.2
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 4.2e-152 542.3 581 58.2
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 1.0e-150 537.7 575 60.7
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.0e-150 537.7 572 60.5
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 7.5e-149 531.6 564 59.9
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 9.7e-149 531.2 572 55.8
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 2.2e-148 530.0 576 60.9
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 2.2e-148 530.0 577 55.8
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 5.3e-147 525.4 594 56.6
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 1.1e-144 517.7 575 57.9
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.2e-143 514.2 640 53.9
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 1.6e-143 513.8 577 56.0
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 2.1e-143 513.5 589 52.5
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 2.0e-141 506.9 391 70.8
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 3.4e-141 506.1 588 57.1
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.3e-140 501.9 585 54.9
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 4.1e-139 499.2 584 56.2
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 8.6e-137 491.5 561 57.8
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.5e-136 490.7 507 55.6
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 7.2e-136 488.4 606 53.6
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 9.5e-136 488.0 660 52.6
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 3.6e-135 486.1 604 53.8
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 2.6e-133 479.9 589 55.5
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 9.8e-133 478.0 612 48.4
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 2.2e-132 476.9 374 73.8
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 3.7e-132 476.1 598 52.7
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 3.1e-131 473.0 502 59.4
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.5e-130 469.2 621 50.2
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 1.3e-129 467.6 304 74.3
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 6.6e-129 465.3 516 54.8
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.1e-128 464.5 555 54.4
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 4.3e-128 462.6 613 46.8
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 7.3e-128 461.8 302 73.5
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 1.0e-126 458.0 585 51.1
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 2.6e-125 453.4 685 44.5
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 7.5e-125 451.8 346 65.6
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 9.8e-125 451.4 406 64.0
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 3.7e-124 449.5 582 51.9
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 1.4e-123 447.6 403 65.5
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.6e-122 444.1 559 53.0
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.6e-122 444.1 565 52.6
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.6e-122 444.1 565 52.6
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 2.7e-122 443.4 559 49.7
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 3.5e-122 443.0 533 53.7
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 2.3e-121 440.3 563 51.0
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 3.0e-121 439.9 565 52.2
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.9e-120 437.2 625 49.3
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 3.3e-120 436.4 596 50.5
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.2e-119 434.5 558 52.7
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 1.2e-119 434.5 365 61.6
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 8.0e-119 431.8 627 47.8
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 3.1e-118 429.9 303 68.0
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 3.1e-118 429.9 605 48.6
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 4.0e-118 429.5 559 51.7
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 5.2e-118 429.1 552 53.8
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 8.9e-118 428.3 495 53.3
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 7.5e-117 425.2 552 53.1
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 9.8e-117 424.9 569 52.2
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 3.7e-116 422.9 553 49.7
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 4.6e-114 416.0 556 46.8
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.1e-112 411.4 275 72.0
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.6e-111 407.5 391 55.0
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 9.9e-109 398.3 390 58.5
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.3e-108 397.9 550 50.9
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 1.7e-108 397.5 585 47.2
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 2.4e-107 393.7 506 49.6
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 9.5e-104 381.7 299 60.2
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 3.1e-102 376.7 559 48.7
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 1.1e-99 368.2 441 48.5
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 3.2e-99 366.7 435 53.1
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 1.6e-98 364.4 414 52.4
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 3.5e-98 363.2 648 40.0
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 4.6e-98 362.8 560 45.5
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 1.3e-97 361.3 456 50.2
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 2.3e-97 360.5 363 61.2
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 5.1e-97 359.4 456 50.0
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.5e-96 357.8 453 46.6
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.5e-96 357.8 453 46.6
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 9.6e-96 355.1 349 51.0
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 9.9e-93 345.1 558 45.5
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 5.4e-91 339.3 426 46.7
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.2e-90 338.2 488 48.6
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 9.0e-86 322.0 544 44.9
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.5e-85 321.2 629 39.9
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 5.8e-85 319.3 576 40.5
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.3e-84 318.2 592 43.1
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 2.2e-84 317.4 439 54.2
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 7.4e-80 302.4 298 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 5.5e-75 286.2 553 39.1
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 2.5e-72 277.3 555 36.6
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 1.3e-71 275.0 326 43.3
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.8e-65 254.6 586 36.3
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.3e-64 250.0 256 58.2
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 5.7e-64 249.6 263 61.2
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.0e-57 227.3 260 45.8
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 1.9e-51 208.0 124 80.6
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 4.7e-42 176.8 260 37.7
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.3e-39 168.7 287 37.6
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 1.5e-35 155.2 182 56.0
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 7.5e-32 142.9 99 69.7
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.8e-30 138.3 190 43.7
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.5e-28 129.8 318 37.7
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 2.2e-23 114.8 72 75.0
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 8.6e-20 102.8 113 52.2
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.2e-16 92.4 62 66.1
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 3.3e-11 74.3 61 49.2
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.7e-10 70.5 59 54.2
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 1.8e-09 68.6 45 75.6
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 2.0e-08 65.1 337 32.9
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.0e-08 65.1 54 55.6
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.7e-07 62.0 75 44.0


User provided reference genes

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