Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0008775 Lotus japonicus HOM05D002794 ORTHO05D030019 6.7e-30 133.3 63 100.0
Lj1g0008967 Lotus japonicus HOM05D002794 ORTHO05D003763 4.8e-12 73.9 37 83.8
Lj4g0009173 Lotus japonicus HOM05D002794 ORTHO05D030019 4.8e-12 73.9 42 78.6
Glyma.15G071600 Glycine max HOM05D002794 ORTHO05D003763 6.9e-11 70.1 51 62.7
Glyma.13G241800 Glycine max HOM05D002794 ORTHO05D003763 1.2e-10 69.3 51 62.7
Lj1g0005259 Lotus japonicus HOM05D002794 ORTHO05D003763 1.2e-10 69.3 54 63.0
Phvul.006G188200 Phaseolus vulgaris HOM05D002794 ORTHO05D003763 1.2e-10 69.3 51 62.7
VMungo0540G1808 Vigna mungo HOM05D002794 ORTHO05D003763 1.2e-10 69.3 51 62.7
CSS0000580 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.5e-10 68.9 37 78.4
Lj6g0005762 Lotus japonicus HOM05D002794 ORTHO05D003763 1.5e-10 68.9 37 78.4
DCAR_001736 Daucus carota HOM05D002794 ORTHO05D003763 3.4e-10 67.8 37 75.7
Lalb_Chr05g0218331 Lupinus albus HOM05D002794 ORTHO05D003763 3.4e-10 67.8 37 75.7
Peaxi162Scf01021g00126 Petunia axillaris HOM05D002794 ORTHO05D003763 3.4e-10 67.8 37 75.7
Solyc03g006520.3 Solanum lycopersicum HOM05D002794 ORTHO05D003763 3.4e-10 67.8 40 70.0
Ah.14g089250 Amaranthus hybridus HOM05D002794 ORTHO05D003763 4.5e-10 67.4 37 73.0
A01p12950 Brassica napus HOM05D002794 ORTHO05D003763 4.5e-10 67.4 51 58.8
RhsimUnG0043800 Rhododendron simsii HOM05D002794 ORTHO05D003763 4.5e-10 67.4 36 77.8
CSS0002732 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 5.9e-10 67.0 37 75.7
CSS0042545 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 5.9e-10 67.0 37 75.7
Glyma.13G182600 Glycine max HOM05D002794 ORTHO05D003763 5.9e-10 67.0 37 75.7
Lalb_Chr16g0383571 Lupinus albus HOM05D002794 ORTHO05D003763 5.9e-10 67.0 49 63.3
Medtr2g013350 Medicago truncatula HOM05D002794 ORTHO05D003763 5.9e-10 67.0 49 63.3
Rhsim02G0123600 Rhododendron simsii HOM05D002794 ORTHO05D003763 5.9e-10 67.0 37 75.7
Actinidia01901 Actinidia chinensis HOM05D002794 ORTHO05D003763 7.7e-10 66.6 55 58.2
HanXRQChr16g0518241 Helianthus annuus HOM05D002794 ORTHO05D003763 7.7e-10 66.6 63 52.4
Lalb_Chr09g0327551 Lupinus albus HOM05D002794 ORTHO05D003763 7.7e-10 66.6 37 73.0
Nitab4.5_0001833g0140 Nicotiana tabacum HOM05D002794 ORTHO05D003763 7.7e-10 66.6 37 73.0
Sopen03g002520 Solanum pennellii HOM05D002794 ORTHO05D003763 7.7e-10 66.6 37 73.0
PGSC0003DMG400026857 Solanum tuberosum HOM05D002794 ORTHO05D003763 7.7e-10 66.6 37 73.0
ATR0006G055 Amborella trichopoda HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
ATR0618G401 Amborella trichopoda HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
arahy.Tifrunner.gnm1.ann1.IR33XW Arachis hypogaea HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
arahy.Tifrunner.gnm1.ann1.XZLA7I Arachis hypogaea HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
CANSAT35G1204 Cannabis sativa HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
CAN.G1627.21 Capsicum annuum HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
CDE02G3438 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
CDE08G0397 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
Ciclev10014734m.g Citrus clementina HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
DCAR_004112 Daucus carota HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
FvH4_3g04740 Fragaria vesca HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
FvH4_6g45300 Fragaria vesca HOM05D002794 ORTHO05D003763 1.3e-09 65.9 53 56.6
FAN02G3067 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.3e-09 65.9 53 56.6
FAN14G4862 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.3e-09 65.9 53 56.6
FAN16G3580 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
FAN21G3653 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
MBI18_g17022_MAGBIO Magnolia biondii HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
MD05G1318200 Malus domestica HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
MD10G1297600 Malus domestica HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
PSO541G2705 Papaver somniferum HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
PSO675G3577 Papaver somniferum HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
Prupe.4G042600 Prunus persica HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
RcHm_v2.0_Chr5g0007761 Rosa chinensis HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
Solyc02g078610.4 Solanum lycopersicum HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
Sopen02g023470 Solanum pennellii HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
PGSC0003DMG400022432 Solanum tuberosum HOM05D002794 ORTHO05D003763 1.3e-09 65.9 37 73.0
Aa31LG6G3640 Aethionema arabicum HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
Aa31LG9G9480 Aethionema arabicum HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
AL7G32340 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
AT4G21660 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
EL10Ac8g20333 Beta vulgaris HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
BcaB03g11685 Brassica carinata HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
BcaC01g00687 Brassica carinata HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
BcaNung02772 Brassica carinata HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
A08p15050 Brassica napus HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
C01p15590 Brassica napus HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
C03p83140 Brassica napus HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
BolC1t01511H Brassica oleracea HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
BolC3t20597H Brassica oleracea HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
BraA01t01239Z Brassica rapa HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
BraA08t33486Z Brassica rapa HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
Carub.0007s1975 Capsella rubella HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
CiPaw.09G055200 Carya illinoinensis HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
CiPaw.10G045900 Carya illinoinensis HOM05D002794 ORTHO05D003763 1.7e-09 65.5 49 61.2
Cc02_g12900 Coffea canephora HOM05D002794 ORTHO05D003763 1.7e-09 65.5 49 61.2
Thhalv10024772m.g Eutrema salsugineum HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
Gohir.A06G125702 Gossypium hirsutum HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
Gohir.D06G130400 Gossypium hirsutum HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
Gorai.010G152200 Gossypium raimondii HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
Manes.16G024600 Manihot esculenta HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 73.0
Nitab4.5_0000960g0150 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
Peaxi162Scf00535g00058 Petunia axillaris HOM05D002794 ORTHO05D003763 1.7e-09 65.5 41 63.4
PGR042G0244 Punica granatum HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
Sp7g19760 Schrenkiella parvula HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
THA.LOC104812811 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
Zm00001eb229010 Zea mays HOM05D002794 ORTHO05D003763 1.7e-09 65.5 37 70.3
Aqoxy3G03900 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 2.2e-09 65.1 37 70.3
Aqoxy5G00583 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 2.2e-09 65.1 37 70.3
Aqoxy7G01746 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 2.2e-09 65.1 37 70.3
Ca_00324_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 2.2e-09 65.1 49 61.2
Psat1g205880 Pisum sativum HOM05D002794 ORTHO05D003763 2.2e-09 65.1 49 61.2
Sabra11G0033000 Salix brachista HOM05D002794 ORTHO05D003763 2.2e-09 65.1 37 70.3
TPR.G29054 Trifolium pratense HOM05D002794 ORTHO05D003763 2.2e-09 65.1 49 61.2
Ciclev10006607m.g Citrus clementina HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
ECA248G2629 Erigeron canadensis HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
Migut.H01505 Erythranthe guttata HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 73.0
HanXRQChr04g0097251 Helianthus annuus HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
Hma1.2p1_1719F.1_g299220 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 2.9e-09 64.7 52 55.8
Lsat_1_v5_gn_1_127401 Lactuca sativa HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
Lj1g0004029 Lotus japonicus HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 73.0
Medtr4g089085 Medicago truncatula HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
Nn1g06626 Nelumbo nucifera HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
Potri.004G039000 Populus trichocarpa HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
Potri.011G047600 Populus trichocarpa HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
QL05p039258 Quercus lobata HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
Sabra04G0023900 Salix brachista HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
Thecc.06G191900 Theobroma cacao HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
HPP92_014808 Vanilla planifolia HOM05D002794 ORTHO05D003763 2.9e-09 64.7 37 70.3
ClCG11G010460 Citrullus lanatus HOM05D002794 ORTHO05D003763 3.8e-09 64.3 37 67.6
MELO3C008690.2 Cucumis melo HOM05D002794 ORTHO05D003763 3.8e-09 64.3 37 67.6
CsaV3_2G009900 Cucumis sativus L. HOM05D002794 ORTHO05D003763 3.8e-09 64.3 37 67.6
Hma1.2p1_0191F.1_g083110 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 3.8e-09 64.3 49 59.2
Manes.17G042900 Manihot esculenta HOM05D002794 ORTHO05D003763 3.8e-09 64.3 37 70.3
Sed0014333 Sechium edule HOM05D002794 ORTHO05D003763 3.8e-09 64.3 37 67.6
Sed0016399 Sechium edule HOM05D002794 ORTHO05D003763 3.8e-09 64.3 37 67.6
Hund23693 Selenicereus undatus HOM05D002794 ORTHO05D003763 3.8e-09 64.3 37 67.6
TPR.G12067 Trifolium pratense HOM05D002794 ORTHO05D003763 3.8e-09 64.3 49 59.2
TAR624G1447 Trochodendron aralioides HOM05D002794 ORTHO05D003763 3.8e-09 64.3 49 59.2
TAR626G0204 Trochodendron aralioides HOM05D002794 ORTHO05D003763 3.8e-09 64.3 49 59.2
FAN11G0433 Fragaria x ananassa HOM05D002794 ORTHO05D003763 5.0e-09 63.9 35 74.3
FAN25G2654 Fragaria x ananassa HOM05D002794 ORTHO05D003763 5.0e-09 63.9 35 74.3
Os02g0827300 Oryza sativa ssp. japonica HOM05D002794 ORTHO05D003763 5.0e-09 63.9 37 70.3
SEGI_11447 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 5.0e-09 63.9 49 61.2
SEGI_11918 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 5.0e-09 63.9 49 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3345 Anthoceros agrestis HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
AUR62014781 Chenopodium quinoa HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
AUR62016968 Chenopodium quinoa HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
COL.COLO4_31514 Corchorus olitorius HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
Dinv07528 Davidia involucrata HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
Duzib160G0262 Durio zibethinus HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
Duzib192G0647 Durio zibethinus HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
Duzib235G0583 Durio zibethinus HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
Lj2C286T5 Lonicera japonica HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
Mapoly0051s0020 Marchantia polymorpha HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
RcHm_v2.0_Chr2g0163041 Rosa chinensis HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 70.3
SMO146G0248 Selaginella moellendorffii HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
THA.LOC104812959 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
TWI38G2081 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 6.5e-09 63.5 37 67.6
Lj4g0023033 Lotus japonicus HOM05D002794 ORTHO05D003763 8.5e-09 63.2 37 70.3
Pp3c14_10510 Physcomitrium patens HOM05D002794 ORTHO05D003763 8.5e-09 63.2 37 67.6
Pp3c17_13490 Physcomitrium patens HOM05D002794 ORTHO05D003763 8.5e-09 63.2 37 67.6
Sc05g0007870 Simmondsia chinensis HOM05D002794 ORTHO05D003763 8.5e-09 63.2 37 64.9
TWI63G1386 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 8.5e-09 63.2 37 67.6
Nn1g05471 Nelumbo nucifera HOM05D002794 ORTHO05D030019 1.1e-08 62.8 34 76.5
Psat6g214160 Pisum sativum HOM05D002794 ORTHO05D003763 1.1e-08 62.8 49 59.2
MCO05G100 Micromonas commoda HOM05D002794 ORTHO05D003763 1.9e-08 62.0 52 51.9
vmacro23256 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 1.9e-08 62.0 37 67.6
Cre12.g514450 Chlamydomonas reinhardtii HOM05D002794 ORTHO05D003763 2.5e-08 61.6 51 52.9
SGA_v2.0_scaffold22G09776 Striga asiatica HOM05D002794 ORTHO05D003763 2.5e-08 61.6 37 67.6
Aqoxy7G01777 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 3.2e-08 61.2 47 59.6
Cfa004795 Carpinus fangiana HOM05D002794 ORTHO05D003763 3.2e-08 61.2 37 67.6
Oeu016115.2 Olea europaea HOM05D002794 ORTHO05D003763 5.5e-08 60.5 37 64.9
CBR_g29963 Chara braunii HOM05D002794 ORTHO05D003763 7.2e-08 60.1 49 55.1
vmacro04586 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 7.2e-08 60.1 37 62.2
SMO139G0083 Selaginella moellendorffii HOM05D002794 ORTHO05D003763 9.4e-08 59.7 42 54.8
Atru.chr4.2241 Acer truncatum HOM05D002794 ORTHO05D003763 1.2e-07 59.3 37 62.2
Atru.chr1.584 Acer truncatum HOM05D002794 ORTHO05D003763 2.7e-07 58.2 42 57.1
COL.COLO4_31110 Corchorus olitorius HOM05D002794 ORTHO05D003763 2.7e-07 58.2 37 59.5
Hund21250 Selenicereus undatus HOM05D002794 ORTHO05D003763 4.6e-07 57.4 35 65.7
Ca_25735_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 6.1e-07 57.0 43 58.1
VMungo0720G2142 Vigna mungo HOM05D008589 ORTHO05D010715 1.4e-06 55.8 37 62.2
Rhsim08G0091600 Rhododendron simsii HOM05D002794 ORTHO05D003763 3.9e-06 54.3 37 59.5
Peaxi162Scf22083g00001 Petunia axillaris HOM05D002794 ORTHO05D003763 5.1e-06 53.9 33 66.7
PRCOL_00004721 Prasinoderma coloniale HOM05D002794 ORTHO05D003763 5.1e-06 53.9 51 43.1


User provided reference genes

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