Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 5.2e-232 807.4 416 100.0
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.2e-206 722.2 411 90.0
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.8e-206 721.5 416 89.2
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 2.7e-204 715.3 416 89.2
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 3.5e-204 714.9 416 89.4
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.3e-203 713.0 416 88.5
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 4.3e-202 708.0 416 86.5
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.8e-201 705.3 416 87.3
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 4.8e-201 704.5 416 86.5
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.4e-200 702.2 416 87.0
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 3.3e-194 681.8 416 83.7
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 3.7e-193 678.3 417 84.4
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 6.3e-193 677.6 416 84.1
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.4e-192 676.4 416 83.9
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 3.1e-192 675.2 416 82.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 5.3e-192 674.5 414 83.1
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.5e-191 672.9 411 82.5
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.5e-191 672.9 416 82.2
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.7e-190 669.5 416 81.7
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.2e-190 669.1 409 83.4
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 2.2e-190 669.1 416 82.9
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 2.9e-190 668.7 416 81.5
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.9e-190 668.7 416 82.2
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 3.8e-190 668.3 416 82.7
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 3.8e-190 668.3 416 81.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 8.5e-190 667.2 416 82.0
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.9e-189 666.0 414 82.6
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 7.2e-189 664.1 414 81.9
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 4.6e-188 661.4 416 81.7
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.1e-188 661.0 416 80.8
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 7.9e-188 660.6 418 81.8
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 7.9e-188 660.6 411 82.0
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 7.9e-188 660.6 416 80.5
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 7.9e-188 660.6 447 77.2
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.0e-187 660.2 416 80.5
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.8e-187 659.4 411 80.8
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-187 659.1 416 80.5
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 5.1e-187 657.9 411 81.0
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 6.7e-187 657.5 409 82.2
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.1e-186 656.8 416 79.3
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 2.0e-186 656.0 411 80.3
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.5e-186 655.6 416 79.8
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 5.7e-186 654.4 416 79.6
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 5.7e-186 654.4 416 79.6
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 9.7e-186 653.7 416 78.4
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.8e-185 651.4 408 83.6
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 6.3e-185 651.0 411 80.5
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.4e-184 649.8 416 78.4
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.8e-184 649.4 418 80.4
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 2.4e-184 649.0 416 79.3
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 2.4e-184 649.0 415 79.8
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.4e-184 649.0 416 80.3
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 3.1e-184 648.7 415 80.2
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 2.0e-183 646.0 409 79.0
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.6e-183 645.6 416 78.6
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 5.9e-183 644.4 414 78.3
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 2.9e-182 642.1 411 79.6
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 3.8e-182 641.7 411 78.6
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 3.2e-181 638.6 422 77.7
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 3.2e-181 638.6 411 78.6
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.2e-180 636.7 416 78.1
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.2e-180 636.7 411 77.9
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.6e-180 636.3 416 77.9
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-180 636.0 416 78.4
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 2.7e-180 635.6 416 78.1
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 4.7e-180 634.8 416 77.6
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 4.7e-180 634.8 416 77.6
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 6.1e-180 634.4 416 78.4
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.8e-179 632.9 416 77.9
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 3.9e-179 631.7 416 78.1
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 8.8e-179 630.6 418 76.8
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 2.6e-178 629.0 416 77.4
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 7.4e-178 627.5 416 77.4
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.2e-177 625.9 416 77.2
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 6.3e-177 624.4 412 79.1
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 7.0e-176 620.9 428 75.5
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 7.0e-176 620.9 428 75.5
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-175 620.2 428 75.2
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.0e-175 619.4 429 74.6
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 2.6e-175 619.0 413 76.0
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.3e-174 616.7 416 75.7
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.1e-173 613.6 440 73.2
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.9e-173 612.8 417 75.1
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 4.2e-173 611.7 416 75.2
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.8e-171 606.3 416 76.2
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 2.3e-171 605.9 417 73.6
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.0e-171 605.1 416 75.5
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 4.0e-171 605.1 411 72.0
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 9.7e-170 600.5 417 73.9
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.6e-167 593.2 373 82.0
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.0e-166 590.5 377 80.6
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 6.1e-164 581.3 418 72.5
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 8.3e-161 570.9 408 71.6
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 2.2e-158 562.8 410 71.5
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 4.2e-157 558.5 373 78.3
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 6.1e-156 554.7 410 71.2
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 4.0e-155 552.0 416 69.7
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 5.2e-155 551.6 412 67.5
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 2.2e-153 546.2 325 85.2
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 4.0e-147 525.4 420 66.4
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 2.9e-145 519.2 487 61.0
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.4e-145 518.1 413 67.3
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 5.4e-144 515.0 403 64.5
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 2.3e-142 509.6 398 64.6
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.9e-142 508.8 408 60.8
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 7.8e-135 484.6 298 81.9
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.0e-134 484.2 282 86.9
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-134 483.0 282 86.9
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 3.6e-132 475.7 305 77.4
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 8.1e-124 448.0 257 88.7
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 5.6e-117 425.2 314 70.1
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.3e-113 414.1 256 81.2
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.4e-112 410.6 287 72.5
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-106 390.6 313 65.2
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 9.0e-99 364.8 402 47.8
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.7e-97 360.5 283 66.1
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 4.9e-97 359.0 292 68.5
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.1e-92 343.6 191 91.6
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 6.1e-79 298.9 200 75.5
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.8e-76 289.3 235 64.3
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.2e-71 274.6 173 78.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 6.1e-71 272.3 183 72.7
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-68 263.8 199 67.3
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 9.4e-64 248.4 400 36.2
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-62 244.2 204 63.7
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 6.5e-57 225.7 131 88.5
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.5e-56 224.6 399 33.6
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 3.6e-55 219.9 239 53.6
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.5e-53 214.5 321 35.8
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 7.0e-51 205.7 121 81.0
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.0e-47 192.2 126 74.6
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-43 181.8 196 56.6
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 4.1e-43 179.9 102 84.3
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.8e-39 167.2 159 57.9
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.7e-37 159.5 179 54.7
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 8.3e-36 155.6 83 90.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 4.5e-34 149.8 416 31.5
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.5e-34 149.8 107 65.4
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.4e-30 138.3 69 94.2
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.8e-30 137.9 116 62.1
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.3e-25 121.7 115 60.0
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 6.6e-17 92.8 99 55.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.9e-16 91.3 51 86.3
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 9.5e-16 89.0 114 52.6
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.2e-15 88.6 153 37.3
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 6.2e-15 86.3 143 44.1
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 4.0e-14 83.6 54 85.2
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 5.8e-13 79.7 146 42.5
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.6e-10 71.6 50 70.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.1e-10 71.2 57 64.9
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-09 68.2 81 48.1
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 3.3e-08 63.9 38 81.6
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.3e-08 62.8 68 51.5
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 8.9e-06 55.8 48 62.5


User provided reference genes

Program Settings