Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P514T6 Lonicera japonica HOM05D000228 ORTHO05D004880 7.3e-147 523.9 264 100.0
Lj7A585G29 Lonicera japonica HOM05D000228 ORTHO05D004880 3.8e-127 458.4 268 88.1
Dinv22035 Davidia involucrata HOM05D000228 ORTHO05D004880 9.1e-105 384.0 268 72.8
Hma1.2p1_1202F.1_g266790 Hydrangea macrophylla HOM05D000228 ORTHO05D004880 4.8e-98 361.7 268 67.9
CSS0032728 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D004880 2.2e-95 352.8 268 67.5
TAR626G0081 Trochodendron aralioides HOM05D000228 ORTHO05D004880 2.5e-94 349.4 269 65.1
Actinidia21520 Actinidia chinensis HOM05D000228 ORTHO05D004880 1.6e-93 346.7 268 66.0
Haze_03043 Corylus avellana HOM05D000228 ORTHO05D004880 4.0e-92 342.0 269 62.8
GSVIVG01013491001 Vitis vinifera HOM05D000228 ORTHO05D004880 2.0e-91 339.7 269 63.9
Sed0021971 Sechium edule HOM05D000228 ORTHO05D004880 4.4e-91 338.6 269 62.8
ClCG01G007520 Citrullus lanatus HOM05D000228 ORTHO05D004880 3.7e-90 335.5 269 62.5
Cc02_g30260 Coffea canephora HOM05D000228 ORTHO05D004880 1.1e-89 334.0 268 61.9
CiPaw.13G013500 Carya illinoinensis HOM05D000228 ORTHO05D004880 1.4e-89 333.6 268 64.6
CsaV3_5G024490 Cucumis sativus L. HOM05D000228 ORTHO05D004880 1.4e-89 333.6 269 61.7
DCAR_022342 Daucus carota HOM05D000228 ORTHO05D004880 2.4e-89 332.8 268 62.3
MELO3C005153.2 Cucumis melo HOM05D000228 ORTHO05D004880 7.0e-89 331.3 269 61.3
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 9.1e-89 330.9 268 61.2
vmacro12694 Vaccinium macrocarpon HOM05D000228 ORTHO05D004880 9.1e-89 330.9 267 63.7
Atru.chr12.1341 Acer truncatum HOM05D000228 ORTHO05D004880 1.6e-88 330.1 268 60.4
SGA_v2.0_scaffold124G33613 Striga asiatica HOM05D000228 ORTHO05D004880 2.0e-88 329.7 267 63.7
MD07G1039700 Malus domestica HOM05D000228 ORTHO05D004880 4.5e-88 328.6 268 60.1
AUR62026863 Chenopodium quinoa HOM05D000228 ORTHO05D004880 5.9e-88 328.2 267 59.6
AUR62032652 Chenopodium quinoa HOM05D000228 ORTHO05D004880 5.9e-88 328.2 267 59.6
Sed0005526 Sechium edule HOM05D000228 ORTHO05D004880 1.3e-87 327.0 269 60.6
Hund27778 Selenicereus undatus HOM05D000228 ORTHO05D004880 2.9e-87 325.9 268 60.1
Hund27781 Selenicereus undatus HOM05D000228 ORTHO05D004880 2.9e-87 325.9 268 60.1
MD02G1287600 Malus domestica HOM05D000228 ORTHO05D004880 1.9e-86 323.2 268 59.3
Ah.10g030560 Amaranthus hybridus HOM05D000228 ORTHO05D004880 2.5e-86 322.8 268 58.6
Ah.10g030570 Amaranthus hybridus HOM05D000228 ORTHO05D004880 2.5e-86 322.8 268 58.6
CANSAT56G3974 Cannabis sativa HOM05D000228 ORTHO05D004880 2.5e-86 322.8 268 61.2
EL10Ac2g02803 Beta vulgaris HOM05D000228 ORTHO05D004880 2.7e-85 319.3 267 58.4
Peaxi162Scf00767g00417 Petunia axillaris HOM05D000228 ORTHO05D004880 2.7e-85 319.3 268 60.8
PSO782G2240 Papaver somniferum HOM05D000228 ORTHO05D004880 1.4e-84 317.0 269 58.4
Solyc01g096390.4 Solanum lycopersicum HOM05D000228 ORTHO05D004880 1.4e-84 317.0 268 60.8
Sopen01g040120 Solanum pennellii HOM05D000228 ORTHO05D004880 1.4e-84 317.0 268 60.8
Aqoxy7G04198 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 1.8e-84 316.6 269 59.5
HanXRQChr15g0481481 Helianthus annuus HOM05D000228 ORTHO05D004880 2.3e-84 316.2 268 58.2
CAN.G1045.38 Capsicum annuum HOM05D000228 ORTHO05D004880 3.0e-84 315.8 268 60.4
Eucgr.J01182 Eucalyptus grandis HOM05D000228 ORTHO05D004880 3.0e-84 315.8 269 58.7
PSO063G0693 Papaver somniferum HOM05D000228 ORTHO05D004880 4.0e-84 315.5 269 58.4
Prupe.2G035500 Prunus persica HOM05D000228 ORTHO05D004880 5.2e-84 315.1 267 57.3
Thecc.10G157200 Theobroma cacao HOM05D000228 ORTHO05D004880 2.6e-83 312.8 269 58.0
ECA236G0597 Erigeron canadensis HOM05D000228 ORTHO05D004880 7.5e-83 311.2 268 57.5
Oeu038177.1 Olea europaea HOM05D000228 ORTHO05D004880 7.5e-83 311.2 267 59.6
HanXRQChr01g0022531 Helianthus annuus HOM05D000228 ORTHO05D004880 1.3e-82 310.5 268 56.3
Migut.B01227 Erythranthe guttata HOM05D000228 ORTHO05D004880 1.7e-82 310.1 267 59.2
Manes.04G159600 Manihot esculenta HOM05D000228 ORTHO05D004880 1.7e-82 310.1 268 58.6
Nn6g31494 Nelumbo nucifera HOM05D000228 ORTHO05D004880 2.4e-81 306.2 269 58.0
Aqoxy6G01013 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 3.1e-81 305.8 269 57.2
Ciclev10004129m.g Citrus clementina HOM05D000228 ORTHO05D004880 3.1e-81 305.8 268 57.5
SalBow5G3376 Salvia bowleyana HOM05D000228 ORTHO05D004880 5.4e-81 305.1 267 59.2
SalBow5G5050 Salvia bowleyana HOM05D000228 ORTHO05D004880 5.4e-81 305.1 267 59.2
Gohir.A06G175400 Gossypium hirsutum HOM05D000228 ORTHO05D004880 9.2e-81 304.3 268 57.1
Duzib114G0608 Durio zibethinus HOM05D000228 ORTHO05D004880 1.2e-80 303.9 268 56.3
Gorai.010G216600 Gossypium raimondii HOM05D000228 ORTHO05D004880 1.2e-80 303.9 268 57.1
RcHm_v2.0_Chr1g0324091 Rosa chinensis HOM05D000228 ORTHO05D004880 2.0e-80 303.1 269 57.6
Gohir.D06G185200 Gossypium hirsutum HOM05D000228 ORTHO05D004880 2.7e-80 302.8 268 56.7
FAN01G1291 Fragaria x ananassa HOM05D000228 ORTHO05D004880 4.5e-80 302.0 269 56.9
Potri.001G027232 Populus trichocarpa HOM05D000228 ORTHO05D004880 2.3e-79 299.7 268 58.2
Sc11g0006440 Simmondsia chinensis HOM05D000228 ORTHO05D004880 5.0e-79 298.5 267 55.1
FvH4_7g03040 Fragaria vesca HOM05D000228 ORTHO05D004880 8.6e-79 297.7 269 56.5
FAN03G2523 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.1e-78 297.4 269 56.5
FAN06G4504 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.1e-78 297.4 269 56.5
COL.COLO4_20753 Corchorus olitorius HOM05D000228 ORTHO05D004880 3.3e-78 295.8 268 56.3
Sabra03G0146600 Salix brachista HOM05D000228 ORTHO05D004880 4.3e-78 295.4 268 57.5
FAN10G2682 Fragaria x ananassa HOM05D000228 ORTHO05D004880 2.8e-77 292.7 269 56.1
Potri.003G196900 Populus trichocarpa HOM05D000228 ORTHO05D004880 4.7e-77 292.0 268 57.5
unitig_0.g1386 Utricularia gibba HOM05D000228 ORTHO05D004880 6.1e-77 291.6 268 54.9
Lalb_Chr01g0007761 Lupinus albus HOM05D000228 ORTHO05D004880 8.9e-76 287.7 269 53.9
Glyma.15G235900 Glycine max HOM05D000228 ORTHO05D004880 1.7e-74 283.5 269 52.8
Glyma.13G196900 Glycine max HOM05D000228 ORTHO05D004880 3.7e-74 282.3 269 53.5
Cpa.g.sc271.2 Carica papaya HOM05D000228 ORTHO05D004880 6.4e-74 281.6 267 54.3
Ca_23957_v3 Cicer arietinum L. HOM05D000228 ORTHO05D004880 6.4e-74 281.6 269 52.4
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 6.4e-74 281.6 269 52.4
Lalb_Chr03g0032731 Lupinus albus HOM05D000228 ORTHO05D004880 6.4e-74 281.6 269 52.4
Lj3g0014961 Lotus japonicus HOM05D000228 ORTHO05D004880 4.6e-72 275.4 269 52.0
Medtr8g038990 Medicago truncatula HOM05D000228 ORTHO05D004880 1.0e-71 274.2 269 51.3
arahy.Tifrunner.gnm1.ann1.50BPU8 Arachis hypogaea HOM05D000228 ORTHO05D004880 1.3e-71 273.9 269 51.3
Psat4g144400 Pisum sativum HOM05D000228 ORTHO05D004880 2.3e-71 273.1 269 51.7
arahy.Tifrunner.gnm1.ann1.K566NY Arachis hypogaea HOM05D000228 ORTHO05D004880 6.6e-71 271.6 269 50.6
TPR.G25078 Trifolium pratense HOM05D000228 ORTHO05D004880 6.6e-71 271.6 262 52.3
VMungo1127G1028 Vigna mungo HOM05D000228 ORTHO05D004880 6.6e-71 271.6 269 51.7
Lj3g0006268 Lotus japonicus HOM05D000228 ORTHO05D004880 1.1e-70 270.8 268 52.6
Phvul.011G206900 Phaseolus vulgaris HOM05D000228 ORTHO05D004880 4.3e-70 268.9 269 52.0
PGR044G0122 Punica granatum HOM05D000228 ORTHO05D004880 1.2e-69 267.3 277 50.5
Lj3C124T2 Lonicera japonica HOM05D000228 ORTHO05D004880 1.4e-65 253.8 199 71.4
HPP92_010995 Vanilla planifolia HOM05D000228 ORTHO05D004880 6.0e-64 248.4 269 49.8
Aa31LG5G19570 Aethionema arabicum HOM05D000228 ORTHO05D004880 1.0e-63 247.7 268 49.3
AL4G37670 Arabidopsis lyrata HOM05D000228 ORTHO05D004880 3.0e-63 246.1 268 50.4
Carub.0004s2219 Capsella rubella HOM05D000228 ORTHO05D004880 5.0e-63 245.4 268 50.0
AT2G40030 Arabidopsis thaliana HOM05D000228 ORTHO05D004880 2.5e-62 243.0 268 50.0
THA.LOC104809820 Tarenaya hassleriana HOM05D000228 ORTHO05D004880 7.3e-62 241.5 268 50.4
A03p22490 Brassica napus HOM05D000228 ORTHO05D004880 1.2e-61 240.7 268 48.1
BolC3t15049H Brassica oleracea HOM05D000228 ORTHO05D004880 1.2e-61 240.7 268 48.1
BraA03t11476Z Brassica rapa HOM05D000228 ORTHO05D004880 1.2e-61 240.7 268 48.1
CARHR134990 Cardamine hirsuta HOM05D000228 ORTHO05D004880 1.2e-61 240.7 268 50.0
BcaC01g05442 Brassica carinata HOM05D000228 ORTHO05D004880 1.6e-61 240.4 268 48.1
C03p26640 Brassica napus HOM05D000228 ORTHO05D004880 1.6e-61 240.4 268 48.1
Sp4g22340 Schrenkiella parvula HOM05D000228 ORTHO05D004880 6.2e-61 238.4 268 48.1
BcaB01g03594 Brassica carinata HOM05D000228 ORTHO05D004880 1.8e-60 236.9 268 48.5
Thhalv10016128m.g Eutrema salsugineum HOM05D000228 ORTHO05D004880 5.2e-60 235.3 268 48.9
BcaB02g09059 Brassica carinata HOM05D000228 ORTHO05D004880 1.2e-59 234.2 268 47.0
Rhsim01G0124000 Rhododendron simsii HOM05D000228 ORTHO05D004880 1.1e-57 227.6 178 63.5
Zm00001eb207920 Zea mays HOM05D000228 ORTHO05D004880 1.3e-55 220.7 268 42.2
CDE02G4035 Ceratophyllum demersum HOM05D000228 ORTHO05D004880 6.6e-55 218.4 268 45.1
TWI15G0020 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 6.2e-53 211.8 264 45.5
TWI38G1715 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 1.1e-52 211.1 264 45.1
MBI06_g38706_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 1.5e-43 180.6 209 46.9
MBI06_g43576_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 2.2e-42 176.8 209 45.9
TPR.G27818 Trifolium pratense HOM05D000228 ORTHO05D004880 4.6e-40 169.1 237 41.4
Lj5P411T2 Lonicera japonica HOM05D000228 ORTHO05D036479 8.7e-39 164.9 86 94.2
Os01g0965000 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D004880 1.6e-32 144.1 246 36.6
SEGI_18016 Sequoiadendron giganteum HOM05D000228 ORTHO05D004880 2.1e-32 143.7 278 32.4
BcaC01g05443 Brassica carinata HOM05D000228 ORTHO05D004880 4.6e-32 142.5 219 41.6
MBI09_g32567_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 8.7e-31 138.3 136 53.7
Zm00001eb119350 Zea mays HOM05D000228 ORTHO05D004880 5.3e-28 129.0 235 35.3
MBI15_g20025_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 1.3e-26 124.4 117 58.1
MBI19_g39580_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012304 2.2e-26 123.6 126 50.0
Nitab4.5_0000307g0250 Nicotiana tabacum HOM05D000228 ORTHO05D004880 2.1e-24 117.1 82 69.5
Nitab4.5_0004955g0050 Nicotiana tabacum HOM05D000228 ORTHO05D004880 2.1e-24 117.1 82 69.5
SEGI_22706 Sequoiadendron giganteum HOM05D000228 ORTHO05D004880 3.1e-20 103.2 277 31.0
MBI19_g40205_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 6.9e-20 102.1 85 58.8
MBI18_g06811_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 1.5e-19 100.9 85 62.4
Lj4A587T9 Lonicera japonica HOM05D000228 ORTHO05D036479 7.6e-19 98.6 63 82.5
MBI17_g42027_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004199 1.7e-18 97.4 117 45.3
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.2e-18 97.1 234 32.1
MBI10_g12844_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 3.9e-15 86.3 56 71.4
SEGI_40451 Sequoiadendron giganteum HOM05D000228 ORTHO05D004880 3.7e-13 79.7 274 26.3
MBI15_g40394_MAGBIO Magnolia biondii HOM05D000030 ORTHO05D010488 6.9e-12 75.5 72 54.2
RhsimUnG0140000 Rhododendron simsii HOM05D000228 ORTHO05D030537 1.7e-10 70.9 54 72.2
Mapoly0104s0044 Marchantia polymorpha HOM05D000228 ORTHO05D006129 5.5e-09 65.9 309 25.6
Mapoly0004s0120 Marchantia polymorpha HOM05D000228 ORTHO05D006129 7.2e-09 65.5 131 32.1
Pp3c15_5270 Physcomitrium patens HOM05D000228 ORTHO05D006129 7.2e-09 65.5 249 25.3
MBI12_g41338_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D012304 6.1e-08 62.4 73 45.2
MBI06_g41726_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 7.9e-08 62.0 48 54.2
MBI15_g05486_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 8.7e-07 58.5 48 52.1
Lsat_1_v5_gn_3_5900 Lactuca sativa HOM05D000228 ORTHO05D006129 1.9e-06 57.4 257 23.0
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 1.9e-06 57.4 84 47.6


User provided reference genes

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