Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 0.0e+00 1255.7 661 100.0
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.8e-189 666.8 613 63.6
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.6e-182 643.7 644 59.2
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.8e-173 613.6 648 59.0
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 3.7e-171 605.9 640 54.5
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 1.7e-168 597.0 653 55.9
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 2.7e-166 589.7 645 53.5
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 1.5e-164 583.9 649 53.2
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 7.4e-164 581.6 660 56.2
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 1.7e-163 580.5 669 54.9
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 2.6e-161 573.2 647 53.2
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 5.0e-160 568.9 676 50.7
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 6.1e-158 562.0 652 54.9
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 2.3e-157 560.1 586 54.9
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 3.0e-157 559.7 702 50.7
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 8.8e-157 558.1 705 50.5
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 5.7e-156 555.4 669 50.4
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.3e-155 554.3 651 51.9
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 1.1e-154 551.2 649 54.2
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 1.4e-154 550.8 669 49.6
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 7.0e-154 548.5 650 53.2
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 4.5e-153 545.8 649 52.7
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.0e-152 544.7 720 48.8
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 1.3e-152 544.3 638 50.6
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 5.0e-152 542.3 747 49.5
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 5.0e-152 542.3 658 53.2
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 8.5e-152 541.6 694 50.0
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 8.5e-152 541.6 669 49.9
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 7.2e-151 538.5 700 50.4
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 4.7e-150 535.8 574 53.8
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 4.0e-149 532.7 479 65.1
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 6.8e-149 531.9 667 52.0
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 6.8e-149 531.9 700 51.0
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 8.8e-149 531.6 671 50.4
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 5.7e-148 528.9 649 53.9
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 2.2e-147 526.9 648 53.4
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 3.7e-147 526.2 641 50.9
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 1.4e-146 524.2 492 59.8
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 1.9e-143 513.8 616 53.9
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 5.5e-143 512.3 646 51.5
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 1.6e-142 510.8 711 46.6
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.0e-141 506.5 656 49.5
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 4.0e-141 506.1 721 47.3
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 5.7e-140 502.3 924 40.7
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 7.5e-140 501.9 687 46.7
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 1.4e-138 497.7 792 42.8
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 4.5e-137 492.7 625 50.7
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 7.7e-137 491.9 665 49.3
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 2.9e-136 490.0 698 49.0
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 3.8e-136 489.6 688 47.1
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 6.6e-136 488.8 742 46.0
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 8.6e-136 488.4 634 52.2
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.2e-134 484.6 702 48.4
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.1e-134 482.3 617 49.8
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 6.1e-134 482.3 663 48.3
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 3.0e-133 479.9 665 48.4
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 8.9e-133 478.4 833 43.1
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 3.7e-131 473.0 622 51.1
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 7.0e-130 468.8 743 45.0
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 2.7e-129 466.8 508 54.7
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 7.8e-129 465.3 580 49.7
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 8.6e-128 461.8 706 41.9
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 5.6e-127 459.1 554 53.1
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 6.2e-126 455.7 411 57.7
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 1.2e-124 451.4 651 46.1
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 8.3e-123 445.3 441 60.3
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 3.2e-122 443.4 682 45.7
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.3e-120 438.0 657 47.8
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 1.7e-120 437.6 728 41.6
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 5.0e-120 436.0 644 44.1
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 1.8e-117 427.6 649 44.4
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 4.4e-116 422.9 699 41.6
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 9.8e-116 421.8 690 44.1
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 3.7e-115 419.9 593 45.7
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.1e-114 418.3 637 46.3
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 3.2e-114 416.8 642 45.8
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 3.2e-114 416.8 642 45.8
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 9.2e-114 415.2 346 60.1
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 1.2e-113 414.8 468 51.7
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 3.5e-113 413.3 642 45.5
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 5.1e-112 409.5 639 45.7
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 6.6e-112 409.1 640 45.0
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.1e-111 408.3 645 45.6
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 1.5e-111 407.9 631 46.6
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 4.3e-111 406.4 695 43.7
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 2.8e-110 403.7 636 46.1
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 2.8e-110 403.7 630 46.0
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 4.7e-110 402.9 757 36.7
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 2.3e-109 400.6 634 43.2
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.9e-106 391.0 637 45.1
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.1e-101 375.2 457 50.3
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.2e-100 371.7 643 42.1
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.2e-100 371.7 549 45.7
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.6e-97 361.3 647 43.0
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 4.6e-97 359.8 421 45.8
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 8.7e-96 355.5 541 41.6
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.1e-95 355.1 717 36.5
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.5e-95 354.8 648 41.8
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 8.1e-94 349.0 437 48.7
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 3.1e-93 347.1 429 46.9
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 3.1e-93 347.1 429 46.9
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 2.0e-92 344.4 714 39.1
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 3.4e-92 343.6 542 43.0
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 1.7e-91 341.3 542 42.6
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 1.4e-85 321.6 518 46.5
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 9.0e-85 318.9 376 45.5
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 7.6e-84 315.8 622 39.2
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 4.6e-81 306.6 674 35.0
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 6.7e-80 302.8 370 48.9
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 7.9e-73 279.3 670 37.0
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 1.3e-70 271.9 402 39.6
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.5e-68 265.0 369 47.2
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.5e-68 263.5 360 50.6
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 2.2e-67 261.2 402 36.8
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 1.2e-65 255.4 522 37.0
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 1.2e-65 255.4 401 35.7
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.3e-64 251.9 658 32.4
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 2.7e-49 201.1 123 78.9
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 5.3e-45 186.8 338 35.2
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 8.8e-40 169.5 445 29.2
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.1e-37 162.5 326 38.3
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 5.5e-34 150.2 342 33.3
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 2.7e-33 147.9 190 43.7
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 3.7e-30 137.5 98 68.4
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 5.9e-28 130.2 113 61.9
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 3.0e-24 117.9 73 78.1
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 5.2e-24 117.1 360 38.1
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.0e-16 91.3 63 66.7
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.0e-15 88.6 62 61.3
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 3.7e-14 84.3 68 54.4
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 9.5e-10 69.7 45 75.6
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.1e-08 66.2 53 58.5
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 4.4e-07 60.8 126 41.3
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.3e-06 59.3 48 52.1


User provided reference genes

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