Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C607T13 Lonicera japonica HOM05D003658 ORTHO05D004457 3.4e-141 505.0 256 100.0
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 1.4e-81 307.0 227 71.8
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.5e-72 276.9 228 64.9
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 5.8e-72 275.0 221 64.3
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 9.8e-72 274.2 228 64.5
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 9.8e-72 274.2 228 64.5
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 1.7e-71 273.5 228 63.2
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 2.9e-71 272.7 228 61.8
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 2.9e-71 272.7 198 71.2
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 4.9e-71 271.9 228 64.0
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 6.4e-71 271.6 228 62.3
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 6.4e-71 271.6 228 62.3
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 1.1e-70 270.8 228 62.3
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.1e-70 270.8 228 63.2
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.1e-70 270.8 228 63.2
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 1.1e-70 270.8 228 63.2
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 1.9e-70 270.0 228 62.7
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 2.4e-70 269.6 228 63.6
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 3.2e-70 269.2 228 63.2
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 5.4e-70 268.5 228 62.7
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 5.4e-70 268.5 228 61.8
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 5.4e-70 268.5 228 61.8
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 5.4e-70 268.5 228 61.4
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 7.0e-70 268.1 228 62.7
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 9.2e-70 267.7 228 62.3
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 9.2e-70 267.7 227 62.6
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 9.2e-70 267.7 228 61.4
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 9.2e-70 267.7 228 63.2
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 1.2e-69 267.3 228 61.8
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 1.2e-69 267.3 228 62.3
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 1.2e-69 267.3 228 61.0
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 1.6e-69 266.9 228 61.8
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.6e-69 266.9 228 61.8
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.6e-69 266.9 228 61.8
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 1.6e-69 266.9 228 62.3
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 1.6e-69 266.9 228 61.8
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 1.6e-69 266.9 228 62.7
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 2.1e-69 266.5 228 61.4
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 2.7e-69 266.2 228 61.4
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 2.7e-69 266.2 228 61.8
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 2.7e-69 266.2 228 62.7
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 2.7e-69 266.2 228 62.3
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 2.7e-69 266.2 228 61.0
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 3.5e-69 265.8 228 61.4
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 3.5e-69 265.8 228 61.4
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 3.5e-69 265.8 228 61.4
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 3.5e-69 265.8 228 61.8
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 3.5e-69 265.8 228 61.0
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 3.5e-69 265.8 228 61.8
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 3.5e-69 265.8 228 61.4
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 4.6e-69 265.4 228 62.3
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 4.6e-69 265.4 227 63.0
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 4.6e-69 265.4 227 59.9
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 4.6e-69 265.4 227 60.8
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 6.0e-69 265.0 228 61.8
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 7.8e-69 264.6 228 62.3
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 1.0e-68 264.2 228 61.0
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 1.0e-68 264.2 228 60.5
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 1.0e-68 264.2 228 61.8
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 1.3e-68 263.8 228 62.3
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 1.3e-68 263.8 228 60.5
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 1.7e-68 263.5 228 61.4
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 1.7e-68 263.5 228 62.3
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 1.7e-68 263.5 228 61.0
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 1.7e-68 263.5 228 60.5
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 1.7e-68 263.5 228 61.4
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 1.7e-68 263.5 228 61.4
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 1.7e-68 263.5 228 62.7
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 2.3e-68 263.1 228 61.0
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 2.3e-68 263.1 228 60.5
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 3.0e-68 262.7 228 60.5
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 3.0e-68 262.7 228 61.8
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 3.9e-68 262.3 228 61.8
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 3.9e-68 262.3 227 61.2
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 3.9e-68 262.3 228 61.8
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 3.9e-68 262.3 228 59.6
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 5.1e-68 261.9 228 62.3
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 5.1e-68 261.9 195 68.2
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 5.1e-68 261.9 228 60.1
CAN.G1001.11 Capsicum annuum HOM05D003658 ORTHO05D004457 6.6e-68 261.5 228 60.1
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 8.6e-68 261.2 228 61.0
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 1.5e-67 260.4 228 61.8
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 1.5e-67 260.4 228 61.4
MBI17_g43655_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 1.5e-67 260.4 228 61.4
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 1.5e-67 260.4 228 60.5
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 1.9e-67 260.0 228 60.5
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 1.9e-67 260.0 228 59.6
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.9e-67 260.0 228 60.5
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 2.5e-67 259.6 228 60.5
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 2.5e-67 259.6 228 61.8
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 2.5e-67 259.6 228 59.6
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 2.5e-67 259.6 228 60.1
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 3.3e-67 259.2 228 60.5
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 3.3e-67 259.2 228 60.1
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 4.3e-67 258.8 228 61.0
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 4.3e-67 258.8 228 59.6
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 5.6e-67 258.5 228 60.1
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 5.6e-67 258.5 228 60.1
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 5.6e-67 258.5 228 60.1
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 5.6e-67 258.5 228 60.1
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 5.6e-67 258.5 228 60.5
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 5.6e-67 258.5 228 59.6
Cpa.g.sc81.16 Carica papaya HOM05D003658 ORTHO05D004457 7.3e-67 258.1 228 59.6
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 7.3e-67 258.1 228 61.0
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 9.5e-67 257.7 228 61.0
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 9.5e-67 257.7 228 59.2
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 9.5e-67 257.7 228 60.5
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 9.5e-67 257.7 228 60.1
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 9.5e-67 257.7 228 58.8
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 1.2e-66 257.3 228 58.8
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 1.6e-66 256.9 228 60.1
Lj4C607T5 Lonicera japonica HOM05D003658 ORTHO05D004457 2.1e-66 256.5 194 71.6
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 2.8e-66 256.1 228 60.5
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 4.7e-66 255.4 228 59.2
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 6.2e-66 255.0 228 58.8
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 1.4e-65 253.8 228 59.6
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 1.4e-65 253.8 228 59.2
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 3.1e-65 252.7 228 60.5
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 4.0e-65 252.3 228 59.2
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 5.2e-65 251.9 228 58.8
Dinv14501 Davidia involucrata HOM05D003658 ORTHO05D004457 8.9e-65 251.1 197 66.5
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 1.2e-64 250.8 182 69.8
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 2.6e-64 249.6 228 57.0
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 3.4e-64 249.2 211 62.1
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 4.4e-64 248.8 228 58.3
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 6.4e-63 245.0 228 57.9
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 6.4e-63 245.0 174 71.8
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 8.3e-63 244.6 230 55.7
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 1.9e-62 243.4 228 57.9
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 4.1e-62 242.3 228 57.5
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.7e-61 239.6 228 55.3
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 3.5e-61 239.2 226 56.6
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 1.9e-59 233.4 228 56.1
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 7.3e-59 231.5 228 55.3
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 1.4e-49 200.7 236 46.6
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 3.1e-49 199.5 210 52.9
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 1.3e-47 194.1 216 48.6
Peaxi162Scf00809g00417 Petunia axillaris HOM05D003658 ORTHO05D004457 3.3e-43 179.5 185 53.5
MD03G1111400 Malus domestica HOM05D003658 ORTHO05D004457 7.3e-43 178.3 128 68.0
Haze_26812 Corylus avellana HOM05D003658 ORTHO05D004457 2.3e-36 156.8 222 40.5
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.5e-35 153.3 221 40.3
Sc12g0005800 Simmondsia chinensis HOM05D003658 ORTHO05D004457 6.0e-29 132.1 99 65.7
Aqoxy7G00992 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 1.3e-26 124.4 145 49.7
Cfa022738 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.6e-26 124.0 179 33.5
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 4.0e-25 119.4 164 40.9
Os01g0570700 Oryza sativa ssp. japonica HOM05D003658 ORTHO05D004457 1.4e-17 94.4 105 50.5
Cfa011369 Carpinus fangiana HOM05D003658 ORTHO05D004457 5.5e-14 82.4 208 26.9
CAN.G1001.10 Capsicum annuum HOM05D003658 ORTHO05D004457 7.2e-14 82.0 208 27.4
Actinidia07110 Actinidia chinensis HOM05D003658 ORTHO05D004457 1.2e-13 81.3 145 31.7
TAR633G0585 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.0e-12 78.2 61 63.9
MD12G1166200 Malus domestica HOM05D003658 ORTHO05D004457 4.3e-11 72.8 146 28.8
Glyma.20G148821 Glycine max HOM05D003658 ORTHO05D004457 5.7e-11 72.4 123 33.3
TAR633G2601 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.3e-10 71.2 90 45.6
Glyma.20G148741 Glycine max HOM05D003658 ORTHO05D004457 3.7e-10 69.7 90 43.3
Aqoxy84s009 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 9.1e-09 65.1 64 48.4
Zm00001eb440860 Zea mays HOM05D003658 ORTHO05D004457 9.1e-09 65.1 185 26.5
ATR0609G052 Amborella trichopoda HOM05D003658 ORTHO05D004457 5.9e-08 62.4 120 30.0
Haze_26994 Corylus avellana HOM05D003658 ORTHO05D004457 1.0e-07 61.6 95 30.5


User provided reference genes

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