Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C531T1 Lonicera japonica HOM05D001043 ORTHO05D014739 1.8e-47 192.2 92 100.0
Lj2A960T22 Lonicera japonica HOM05D001043 ORTHO05D014739 3.8e-18 94.7 56 78.6
Oeu041541.1 Olea europaea HOM05D001043 ORTHO05D001555 7.8e-11 70.5 72 50.0
Lj9A220G16 Lonicera japonica HOM05D001043 ORTHO05D001555 4.7e-08 61.2 35 80.0
Lju926A11T9 Lonicera japonica HOM05D001043 ORTHO05D001555 4.7e-08 61.2 35 80.0
DCAR_025274 Daucus carota HOM05D001043 ORTHO05D001555 1.0e-07 60.1 43 65.1
CiPaw.07G028800 Carya illinoinensis HOM05D001043 ORTHO05D001555 1.8e-07 59.3 45 62.2
CANSAT54G1346 Cannabis sativa HOM05D001043 ORTHO05D001555 2.3e-07 58.9 43 62.8
TAR633G0038 Trochodendron aralioides HOM05D001043 ORTHO05D001555 2.3e-07 58.9 43 65.1
GSVIVG01031229001 Vitis vinifera HOM05D001043 ORTHO05D001555 2.3e-07 58.9 43 65.1
EL10Ac4g09819 Beta vulgaris HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Carub.0002s0782 Capsella rubella HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 74.3
CDE02G0469 Ceratophyllum demersum HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
CDE08G1238 Ceratophyllum demersum HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Ciclev10001298m.g Citrus clementina HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Dinv30879 Davidia involucrata HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Hma1.2p1_0472F.1_g159950 Hydrangea macrophylla HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Lj5A335T26 Lonicera japonica HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
MBI18_g31668_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Oeu000016.1 Olea europaea HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Oeu053705.1 Olea europaea HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Oeu064816.3 Olea europaea HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Potri.013G009500 Populus trichocarpa HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Sabra13G0008100 Salix brachista HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
SalBow7G4529 Salvia bowleyana HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
Hund07140 Selenicereus undatus HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
SGA_v2.0_scaffold5G02882 Striga asiatica HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
SGA_v2.0_scaffold5G02883 Striga asiatica HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
TWI12G1401 Tripterygium wilfordii HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
TWI36G0511 Tripterygium wilfordii HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
TWI56G0583 Tripterygium wilfordii HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
GSVIVG01028114001 Vitis vinifera HOM05D001043 ORTHO05D001555 3.0e-07 58.5 35 77.1
MSTRG.27945 Avicennia marina HOM05D001043 ORTHO05D001555 4.0e-07 58.2 35 74.3
Duzib177G0736 Durio zibethinus HOM05D001043 ORTHO05D001555 4.0e-07 58.2 35 71.4
Eucgr.H03284 Eucalyptus grandis HOM05D001043 ORTHO05D001555 4.0e-07 58.2 35 74.3
SGA_v2.0_scaffold37G14613 Striga asiatica HOM05D001043 ORTHO05D001555 4.0e-07 58.2 35 74.3
Sabra05G0012400 Salix brachista HOM05D000518 ORTHO05D000737 5.2e-07 57.8 35 74.3
Sabra05G0025200 Salix brachista HOM05D000518 ORTHO05D000737 5.2e-07 57.8 35 74.3
Aa31LG1G5940 Aethionema arabicum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Aa31LG1G6020 Aethionema arabicum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Aa31LG1G6040 Aethionema arabicum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Aqoxy2G04099 Aquilegia oxysepala HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
AL1G19690 Arabidopsis lyrata HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
AL1G19700 Arabidopsis lyrata HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
AL1G66020 Arabidopsis lyrata HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
AT1G09210 Arabidopsis thaliana HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
MSTRG.16404 Avicennia marina HOM05D001043 ORTHO05D001555 6.8e-07 57.4 43 60.5
BcaB07g31122 Brassica carinata HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
BcaC04g22055 Brassica carinata HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
BcaC05g24778 Brassica carinata HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
BcaC07g38486 Brassica carinata HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
A06p05960 Brassica napus HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
A08p34730 Brassica napus HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
A09p19090 Brassica napus HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
C05p07200 Brassica napus HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
C08p12540 Brassica napus HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
C09p24090 Brassica napus HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
BolC5t29481H Brassica oleracea HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
BolC8t48893H Brassica oleracea HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
BolC9t55324H Brassica oleracea HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
BraA06t23806Z Brassica rapa HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
BraA08t35385Z Brassica rapa HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
BraA09t37527Z Brassica rapa HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Carub.0001s0854 Capsella rubella HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Carub.0001s0855 Capsella rubella HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
CARHR009170 Cardamine hirsuta HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
CARHR289890 Cardamine hirsuta HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Ca_10166_v3 Cicer arietinum L. HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Cc02_g34920 Coffea canephora HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
COL.COLO4_04152 Corchorus olitorius HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Migut.N01385 Erythranthe guttata HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Migut.N01386 Erythranthe guttata HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Thhalv10007717m.g Eutrema salsugineum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Thhalv10023481m.g Eutrema salsugineum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Glyma.10G147600 Glycine max HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Glyma.20G098400 Glycine max HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Gohir.A13G175401 Gossypium hirsutum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Gohir.D13G181400 Gossypium hirsutum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Gorai.013G206800 Gossypium raimondii HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Gorai.013G206900 Gossypium raimondii HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
HanXRQChr03g0071111 Helianthus annuus HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
HanXRQChr09g0246011 Helianthus annuus HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Hma1.2p1_0008F-1.1_g005690 Hydrangea macrophylla HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Lsat_1_v5_gn_9_122580 Lactuca sativa HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Lsat_1_v5_gn_9_122640 Lactuca sativa HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Lalb_Chr02g0147851 Lupinus albus HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Manes.08G112000 Manihot esculenta HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Medtr1g083960 Medicago truncatula HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Nitab4.5_0000368g0160 Nicotiana tabacum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Nitab4.5_0008173g0030 Nicotiana tabacum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Peaxi162Scf00071g00426 Petunia axillaris HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Peaxi162Scf00673g00220 Petunia axillaris HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Potri.005G015100 Populus trichocarpa HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
PGR031G1500 Punica granatum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Sp1g07820 Schrenkiella parvula HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Sp2g06520 Schrenkiella parvula HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Solyc01g100380.4 Solanum lycopersicum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Sopen01g043900 Solanum pennellii HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
PGSC0003DMG400002776 Solanum tuberosum HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Thecc.05G321800 Theobroma cacao HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
TPR.G2631 Trifolium pratense HOM05D001043 ORTHO05D001555 6.8e-07 57.4 35 74.3
Cpa.g.sc48.152 Carica papaya HOM05D001043 ORTHO05D001555 8.9e-07 57.0 35 74.3
CDE02G2510 Ceratophyllum demersum HOM05D001043 ORTHO05D001555 8.9e-07 57.0 35 74.3
CDE09G1385 Ceratophyllum demersum HOM05D001043 ORTHO05D001555 8.9e-07 57.0 35 74.3
ClCG00G004620 Citrullus lanatus HOM05D001043 ORTHO05D001555 8.9e-07 57.0 35 74.3
ClCG02G015010 Citrullus lanatus HOM05D001043 ORTHO05D001555 8.9e-07 57.0 35 74.3
Haze_04073 Corylus avellana HOM05D001043 ORTHO05D001555 8.9e-07 57.0 35 74.3
Oeu013212.1 Olea europaea HOM05D001043 ORTHO05D001555 8.9e-07 57.0 35 71.4
THA.LOC104820667 Tarenaya hassleriana HOM05D001043 ORTHO05D001555 8.9e-07 57.0 35 71.4
TAR628G0114 Trochodendron aralioides HOM05D001043 ORTHO05D001555 8.9e-07 57.0 35 74.3
CAN.G1715.10 Capsicum annuum HOM05D001043 ORTHO05D001555 1.2e-06 56.6 35 71.4
Phvul.007G200800 Phaseolus vulgaris HOM05D001043 ORTHO05D001555 1.2e-06 56.6 35 74.3
SHI18064 Sapria himalayana HOM05D001043 ORTHO05D001555 1.2e-06 56.6 35 71.4
VMungo0720G0809 Vigna mungo HOM05D001043 ORTHO05D001555 1.2e-06 56.6 35 74.3
MSTRG.20385 Avicennia marina HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 68.6
FvH4_6g07360 Fragaria vesca HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
FAN02G1780 Fragaria x ananassa HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
FAN05G5481 Fragaria x ananassa HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
FAN09G3557 Fragaria x ananassa HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
FAN14G0923 Fragaria x ananassa HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
Lalb_Chr06g0167481 Lupinus albus HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
Lalb_Chr21g0310331 Lupinus albus HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
Oeu039503.1 Olea europaea HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
Psat6g152120 Pisum sativum HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
unitig_37.g12568 Utricularia gibba HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 74.3
unitig_46.g18319 Utricularia gibba HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
HPP92_018013 Vanilla planifolia HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
HPP92_026674 Vanilla planifolia HOM05D001043 ORTHO05D001555 1.5e-06 56.2 35 71.4
arahy.Tifrunner.gnm1.ann1.94UDPX Arachis hypogaea HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 71.4
arahy.Tifrunner.gnm1.ann1.U8M3K9 Arachis hypogaea HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 71.4
BcaC03g17586 Brassica carinata HOM05D001043 ORTHO05D014739 2.0e-06 55.8 89 40.4
BcaC03g17587 Brassica carinata HOM05D001043 ORTHO05D014739 2.0e-06 55.8 89 40.4
MELO3C004194.2 Cucumis melo HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 71.4
MD04G1194200 Malus domestica HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 71.4
MD12G1206700 Malus domestica HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 71.4
Nn4g25615 Nelumbo nucifera HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 71.4
Prupe.6G313900 Prunus persica HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 71.4
RcHm_v2.0_Chr3g0456961 Rosa chinensis HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 71.4
Sed0011804 Sechium edule HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 71.4
Sed0024717 Sechium edule HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 71.4
TAR362G0350 Trochodendron aralioides HOM05D001043 ORTHO05D001555 2.0e-06 55.8 35 74.3
Duzib128G0732 Durio zibethinus HOM05D001043 ORTHO05D001555 2.6e-06 55.5 35 68.6
Gohir.A11G272800 Gossypium hirsutum HOM05D001043 ORTHO05D001555 2.6e-06 55.5 35 68.6
Gohir.A13G111900 Gossypium hirsutum HOM05D001043 ORTHO05D001555 2.6e-06 55.5 35 68.6
Gohir.D11G283000 Gossypium hirsutum HOM05D001043 ORTHO05D001555 2.6e-06 55.5 35 68.6
Gohir.D13G115000 Gossypium hirsutum HOM05D001043 ORTHO05D001555 2.6e-06 55.5 35 68.6
Gorai.007G305800 Gossypium raimondii HOM05D001043 ORTHO05D001555 2.6e-06 55.5 35 68.6
Gorai.013G129200 Gossypium raimondii HOM05D001043 ORTHO05D001555 2.6e-06 55.5 35 68.6
Sc16g0008980 Simmondsia chinensis HOM05D001043 ORTHO05D001555 2.6e-06 55.5 35 68.6
THA.LOC104816886 Tarenaya hassleriana HOM05D001043 ORTHO05D001555 2.6e-06 55.5 35 71.4
BcaB04g20160 Brassica carinata HOM05D001043 ORTHO05D001555 3.4e-06 55.1 35 71.4
ECA240G4280 Erigeron canadensis HOM05D001043 ORTHO05D001555 3.4e-06 55.1 35 71.4
Gohir.D13G181300 Gossypium hirsutum HOM05D001043 ORTHO05D001555 3.4e-06 55.1 35 71.4
Zm00001eb096980 Zea mays HOM05D001043 ORTHO05D001555 3.4e-06 55.1 35 68.6
Atru.chr2.156 Acer truncatum HOM05D001043 ORTHO05D001555 4.4e-06 54.7 35 71.4
Duzib106G1968 Durio zibethinus HOM05D001043 ORTHO05D001555 4.4e-06 54.7 35 68.6
Lj5g0021828 Lotus japonicus HOM05D001043 ORTHO05D001555 4.4e-06 54.7 35 71.4
PSO170G3834 Papaver somniferum HOM05D001043 ORTHO05D001555 4.4e-06 54.7 35 71.4
PSO357G0316 Papaver somniferum HOM05D001043 ORTHO05D001555 4.4e-06 54.7 35 71.4
Os07g0246200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D001555 5.7e-06 54.3 35 68.6
THA.LOC104823722 Tarenaya hassleriana HOM05D001043 ORTHO05D001555 5.7e-06 54.3 35 65.7
TAR633G2314 Trochodendron aralioides HOM05D001043 ORTHO05D001555 5.7e-06 54.3 35 71.4
vmacro19736 Vaccinium macrocarpon HOM05D001043 ORTHO05D001555 5.7e-06 54.3 45 57.8
PGR083G0650 Punica granatum HOM05D001043 ORTHO05D001555 7.5e-06 53.9 35 71.4
HPP92_015450 Vanilla planifolia HOM05D001043 ORTHO05D001555 7.5e-06 53.9 35 65.7
Gohir.A13G175700 Gossypium hirsutum HOM05D001043 ORTHO05D001555 9.8e-06 53.5 35 68.6
MBI19_g17405_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D001555 9.8e-06 53.5 35 68.6


User provided reference genes

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