Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A97T76 Lonicera japonica HOM05D001790 ORTHO05D033938 7.7e-45 183.3 86 100.0
Lsat_1_v5_gn_9_72921 Lactuca sativa HOM05D001790 ORTHO05D007425 1.4e-33 146.0 79 87.3
Cfa017888 Carpinus fangiana HOM05D001790 ORTHO05D007425 3.9e-33 144.4 79 84.8
Ciclev10000915m.g Citrus clementina HOM05D001790 ORTHO05D007425 3.9e-33 144.4 80 83.8
Manes.18G064400 Manihot esculenta HOM05D001790 ORTHO05D007425 3.9e-33 144.4 79 83.5
Dinv44801 Davidia involucrata HOM05D001790 ORTHO05D007425 5.2e-33 144.1 79 83.5
Prupe.1G522400 Prunus persica HOM05D001790 ORTHO05D007425 5.2e-33 144.1 79 83.5
QL02p002533 Quercus lobata HOM05D001790 ORTHO05D007425 5.2e-33 144.1 79 84.8
ECA232G4436 Erigeron canadensis HOM05D001790 ORTHO05D007425 8.8e-33 143.3 79 87.3
FAN18G4557 Fragaria x ananassa HOM05D001790 ORTHO05D007425 1.1e-32 142.9 79 83.5
Thecc.08G102800 Theobroma cacao HOM05D001790 ORTHO05D007425 1.1e-32 142.9 79 83.5
Atru.chr13.1122 Acer truncatum HOM05D001790 ORTHO05D007425 1.5e-32 142.5 78 83.3
Dinv07070 Davidia involucrata HOM05D001790 ORTHO05D007425 1.5e-32 142.5 78 85.9
FvH4_5g36670 Fragaria vesca HOM05D001790 ORTHO05D007425 1.5e-32 142.5 79 83.5
Lj1g0028118 Lotus japonicus HOM05D001790 ORTHO05D007425 1.5e-32 142.5 81 80.2
TAR629G1329 Trochodendron aralioides HOM05D001790 ORTHO05D007425 1.5e-32 142.5 79 83.5
CAN.G857.9 Capsicum annuum HOM05D001790 ORTHO05D007425 2.0e-32 142.1 80 80.0
COL.COLO4_06422 Corchorus olitorius HOM05D001790 ORTHO05D007425 2.0e-32 142.1 79 82.3
Medtr3g099470 Medicago truncatula HOM05D001790 ORTHO05D007425 2.0e-32 142.1 79 82.3
Potri.002G100300 Populus trichocarpa HOM05D001790 ORTHO05D007425 2.0e-32 142.1 79 82.3
VMungo1309G0728 Vigna mungo HOM05D001790 ORTHO05D007425 2.0e-32 142.1 78 83.3
Ca_16039_v3 Cicer arietinum L. HOM05D001790 ORTHO05D007425 2.6e-32 141.7 78 83.3
ClCG11G014250 Citrullus lanatus HOM05D001790 ORTHO05D007425 2.6e-32 141.7 79 82.3
Glyma.04G099400 Glycine max HOM05D001790 ORTHO05D007425 2.6e-32 141.7 79 81.0
Gohir.A05G223700 Gossypium hirsutum HOM05D001790 ORTHO05D007425 2.6e-32 141.7 79 82.3
Lj4A726G66 Lonicera japonica HOM05D001790 ORTHO05D007425 2.6e-32 141.7 77 85.7
Phvul.009G032700 Phaseolus vulgaris HOM05D001790 ORTHO05D007425 2.6e-32 141.7 78 83.3
COL.COLO4_12015 Corchorus olitorius HOM05D001790 ORTHO05D007425 3.3e-32 141.4 79 81.0
Gohir.D05G226500 Gossypium hirsutum HOM05D001790 ORTHO05D007425 3.3e-32 141.4 79 82.3
RcHm_v2.0_Chr7g0242571 Rosa chinensis HOM05D001790 ORTHO05D007425 3.3e-32 141.4 79 83.5
THA.LOC104814183 Tarenaya hassleriana HOM05D001790 ORTHO05D007425 3.3e-32 141.4 79 82.3
Gorai.009G234100 Gossypium raimondii HOM05D001790 ORTHO05D007425 4.4e-32 141.0 79 81.0
CiPaw.15G046300 Carya illinoinensis HOM05D001790 ORTHO05D007425 5.7e-32 140.6 79 84.8
Duzib093G1820 Durio zibethinus HOM05D001790 ORTHO05D007425 5.7e-32 140.6 78 82.1
MD15G1373800 Malus domestica HOM05D001790 ORTHO05D007425 5.7e-32 140.6 79 81.0
CSS0004971 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D007425 7.4e-32 140.2 79 81.0
Cpa.g.sc36.175 Carica papaya HOM05D001790 ORTHO05D007425 7.4e-32 140.2 79 82.3
DCAR_014069 Daucus carota HOM05D001790 ORTHO05D007425 7.4e-32 140.2 79 81.0
Lalb_Chr11g0065281 Lupinus albus HOM05D001790 ORTHO05D007425 7.4e-32 140.2 79 81.0
GSVIVG01004302001 Vitis vinifera HOM05D001790 ORTHO05D007425 7.4e-32 140.2 79 84.8
Cc10_g06740 Coffea canephora HOM05D001790 ORTHO05D007425 9.7e-32 139.8 79 79.7
CsaV3_3G047640 Cucumis sativus L. HOM05D001790 ORTHO05D007425 9.7e-32 139.8 79 79.7
FAN04G1529 Fragaria x ananassa HOM05D001790 ORTHO05D007425 9.7e-32 139.8 79 82.3
FAN04G1975 Fragaria x ananassa HOM05D001790 ORTHO05D007425 9.7e-32 139.8 79 82.3
AUR62018961 Chenopodium quinoa HOM05D001790 ORTHO05D007425 1.3e-31 139.4 79 83.5
Eucgr.F00372 Eucalyptus grandis HOM05D001790 ORTHO05D007425 1.3e-31 139.4 79 82.3
Psat5g050600 Pisum sativum HOM05D001790 ORTHO05D007425 1.3e-31 139.4 79 79.7
CDE11G0514 Ceratophyllum demersum HOM05D001790 ORTHO05D007425 1.7e-31 139.0 79 79.7
AUR62027806 Chenopodium quinoa HOM05D001790 ORTHO05D007425 1.7e-31 139.0 79 82.3
Nn3g19226 Nelumbo nucifera HOM05D001790 ORTHO05D007425 1.7e-31 139.0 79 81.0
Solyc04g074630.4 Solanum lycopersicum HOM05D001790 ORTHO05D007425 1.7e-31 139.0 80 80.0
Sopen04g029600 Solanum pennellii HOM05D001790 ORTHO05D007425 1.7e-31 139.0 80 80.0
EL10Ac1g01156 Beta vulgaris HOM05D001790 ORTHO05D007425 2.2e-31 138.7 79 82.3
MELO3C003560.2 Cucumis melo HOM05D001790 ORTHO05D007425 2.2e-31 138.7 79 78.5
HanXRQChr09g0246831 Helianthus annuus HOM05D001790 ORTHO05D007425 2.2e-31 138.7 79 82.3
PGR044G2367 Punica granatum HOM05D001790 ORTHO05D007425 2.2e-31 138.7 79 82.3
Sed0003211 Sechium edule HOM05D001790 ORTHO05D007425 2.2e-31 138.7 79 81.0
PGSC0003DMG401030816 Solanum tuberosum HOM05D001790 ORTHO05D007425 2.2e-31 138.7 80 78.8
Aqoxy3G02611 Aquilegia oxysepala HOM05D001790 ORTHO05D007425 2.8e-31 138.3 79 77.2
MD08G1187900 Malus domestica HOM05D001790 ORTHO05D007425 2.8e-31 138.3 79 81.0
Actinidia30793 Actinidia chinensis HOM05D001790 ORTHO05D007425 3.7e-31 137.9 79 77.2
Migut.D01115 Erythranthe guttata HOM05D001790 ORTHO05D007425 3.7e-31 137.9 79 79.7
MBI04_g30769_MAGBIO Magnolia biondii HOM05D001790 ORTHO05D007425 3.7e-31 137.9 78 80.8
arahy.Tifrunner.gnm1.ann1.LM7JF4 Arachis hypogaea HOM05D001790 ORTHO05D007425 4.8e-31 137.5 81 76.5
A08p33190 Brassica napus HOM05D001790 ORTHO05D007425 4.8e-31 137.5 79 78.5
C08p14990 Brassica napus HOM05D001790 ORTHO05D007425 4.8e-31 137.5 79 78.5
BolC8t49129H Brassica oleracea HOM05D001790 ORTHO05D007425 4.8e-31 137.5 79 78.5
BraA08t35237Z Brassica rapa HOM05D001790 ORTHO05D007425 4.8e-31 137.5 79 78.5
Haze_18273 Corylus avellana HOM05D001790 ORTHO05D007425 4.8e-31 137.5 76 84.2
Haze_18277 Corylus avellana HOM05D001790 ORTHO05D007425 4.8e-31 137.5 76 84.2
arahy.Tifrunner.gnm1.ann1.AJ67NU Arachis hypogaea HOM05D001790 ORTHO05D007425 6.3e-31 137.1 81 75.3
arahy.Tifrunner.gnm1.ann1.VN8WUD Arachis hypogaea HOM05D001790 ORTHO05D007425 6.3e-31 137.1 81 75.3
Rhsim06G0078100 Rhododendron simsii HOM05D001790 ORTHO05D007425 6.3e-31 137.1 79 79.7
TWI36G0174 Tripterygium wilfordii HOM05D001790 ORTHO05D007425 6.3e-31 137.1 79 78.5
Aa31LG1G2860 Aethionema arabicum HOM05D001790 ORTHO05D007425 8.2e-31 136.7 79 79.7
FAN08G1454 Fragaria x ananassa HOM05D001790 ORTHO05D007425 8.2e-31 136.7 79 81.0
FAN13G1337 Fragaria x ananassa HOM05D001790 ORTHO05D007425 8.2e-31 136.7 79 81.0
A09p64300 Brassica napus HOM05D001790 ORTHO05D007425 1.1e-30 136.3 79 77.2
C08p47910 Brassica napus HOM05D001790 ORTHO05D007425 1.1e-30 136.3 79 77.2
BraA09t41773Z Brassica rapa HOM05D001790 ORTHO05D007425 1.1e-30 136.3 79 77.2
CARHR012190 Cardamine hirsuta HOM05D001790 ORTHO05D007425 1.1e-30 136.3 79 77.2
Thhalv10009769m.g Eutrema salsugineum HOM05D001790 ORTHO05D007425 1.1e-30 136.3 79 78.5
PSO017G6936 Papaver somniferum HOM05D001790 ORTHO05D007425 1.4e-30 136.0 79 77.2
PSO063G1969 Papaver somniferum HOM05D001790 ORTHO05D007425 1.4e-30 136.0 79 77.2
Peaxi162Scf00030g02221 Petunia axillaris HOM05D001790 ORTHO05D007425 1.4e-30 136.0 78 78.2
Sp1g10490 Schrenkiella parvula HOM05D001790 ORTHO05D007425 1.4e-30 136.0 79 77.2
Hund26982 Selenicereus undatus HOM05D001790 ORTHO05D007425 1.4e-30 136.0 79 81.0
Zm00001eb166980 Zea mays HOM05D001790 ORTHO05D007425 1.4e-30 136.0 78 80.8
AL1G23040 Arabidopsis lyrata HOM05D001790 ORTHO05D007425 1.8e-30 135.6 79 75.9
Nitab4.5_0010488g0020 Nicotiana tabacum HOM05D001790 ORTHO05D007425 1.8e-30 135.6 80 77.5
AT1G11870 Arabidopsis thaliana HOM05D001790 ORTHO05D007425 2.4e-30 135.2 79 75.9
CANSAT11G0398 Cannabis sativa HOM05D001790 ORTHO05D007425 2.4e-30 135.2 79 78.5
Carub.0001s1152 Capsella rubella HOM05D001790 ORTHO05D007425 2.4e-30 135.2 79 75.9
SGA_v2.0_scaffold37G14719 Striga asiatica HOM05D001790 ORTHO05D007425 3.1e-30 134.8 79 78.5
Os11g0610900 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D007425 7.0e-30 133.7 78 78.2
ATR0829G131 Amborella trichopoda HOM05D001790 ORTHO05D007425 9.1e-30 133.3 78 76.9
Nitab4.5_0000786g0120 Nicotiana tabacum HOM05D001790 ORTHO05D007425 9.1e-30 133.3 79 77.2
PSO782G4258 Papaver somniferum HOM05D001790 ORTHO05D007425 1.6e-29 132.5 79 75.9
BolC8t52328H Brassica oleracea HOM05D001790 ORTHO05D007425 2.0e-29 132.1 79 74.7
SGA_v2.0_scaffold5G02779 Striga asiatica HOM05D001790 ORTHO05D007425 3.5e-29 131.3 79 74.7
Rhsim07G0204900 Rhododendron simsii HOM05D001790 ORTHO05D007425 4.5e-29 131.0 78 74.4
vmacro04712 Vaccinium macrocarpon HOM05D001790 ORTHO05D007425 5.9e-29 130.6 78 74.4
unitig_90.g27543 Utricularia gibba HOM05D001790 ORTHO05D007425 1.0e-28 129.8 72 83.3
CSS0049651 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D033938 2.2e-28 128.6 79 74.7
Sc01g0000750 Simmondsia chinensis HOM05D001790 ORTHO05D007425 2.9e-28 128.3 79 74.7
SEGI_05166 Sequoiadendron giganteum HOM05D001790 ORTHO05D007425 3.8e-28 127.9 79 70.9
HPP92_000770 Vanilla planifolia HOM05D001790 ORTHO05D007425 8.5e-28 126.7 79 74.7
HPP92_026795 Vanilla planifolia HOM05D001790 ORTHO05D007425 8.5e-28 126.7 79 74.7
CSS0003233 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D033938 1.1e-27 126.3 79 73.4
Mapoly0016s0010 Marchantia polymorpha HOM05D001790 ORTHO05D007425 1.9e-27 125.6 78 70.5
vmacro04723 Vaccinium macrocarpon HOM05D001790 ORTHO05D007425 4.2e-27 124.4 78 69.2
Pp3c5_28560 Physcomitrium patens HOM05D001790 ORTHO05D007425 1.4e-25 119.4 79 64.6
HPP92_000746 Vanilla planifolia HOM05D001790 ORTHO05D007425 5.7e-24 114.0 74 73.0
CBR_g10918 Chara braunii HOM05D001790 ORTHO05D007425 1.3e-23 112.8 79 63.3
AagrBONN_evm.TU.Sc2ySwM_368.3217 Anthoceros agrestis HOM05D001790 ORTHO05D007425 2.8e-23 111.7 79 63.3
Cre02.g082877 Chlamydomonas reinhardtii HOM05D001790 ORTHO05D007425 1.7e-20 102.4 78 52.6
BcaB03g13225 Brassica carinata HOM05D001790 ORTHO05D007425 1.9e-19 99.0 63 71.4
PRCOL_00005275 Prasinoderma coloniale HOM05D001790 ORTHO05D007425 3.0e-17 91.7 79 51.9
MCO07G674 Micromonas commoda HOM05D001790 ORTHO05D007425 3.7e-15 84.7 79 41.8
Lj3A823T68 Lonicera japonica HOM05D001790 ORTHO05D007425 4.1e-14 81.3 54 70.4
Oeu008907.1 Olea europaea HOM05D001790 ORTHO05D007425 5.5e-11 70.9 39 82.1
Os01g0559100 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D003691 2.2e-07 58.9 71 39.4
Os03g0198400 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D003691 6.3e-07 57.4 71 38.0
Zm00001eb113140 Zea mays HOM05D001790 ORTHO05D003691 1.1e-06 56.6 71 36.6
Zm00001eb400980 Zea mays HOM05D001790 ORTHO05D003691 1.1e-06 56.6 71 36.6
Nitab4.5_0005388g0030 Nicotiana tabacum HOM05D001790 ORTHO05D003691 5.4e-06 54.3 71 35.2
Nitab4.5_0008677g0040 Nicotiana tabacum HOM05D001790 ORTHO05D003691 5.4e-06 54.3 71 35.2
EL10As5g23472 Beta vulgaris HOM05D001790 ORTHO05D003691 9.2e-06 53.5 71 33.8
AUR62011866 Chenopodium quinoa HOM05D001790 ORTHO05D003691 9.2e-06 53.5 71 33.8
AUR62024709 Chenopodium quinoa HOM05D001790 ORTHO05D003691 9.2e-06 53.5 71 33.8
PGSC0003DMG400013480 Solanum tuberosum HOM05D001790 ORTHO05D003691 9.2e-06 53.5 71 36.6


User provided reference genes

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