Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A921G26 Lonicera japonica HOM05D001363 ORTHO05D002212 1.5e-47 192.6 104 100.0
Cc06_g12790 Coffea canephora HOM05D001363 ORTHO05D002212 3.2e-29 131.7 85 82.4
Oeu004804.1 Olea europaea HOM05D001363 ORTHO05D002212 4.2e-29 131.3 81 86.4
SalBow6G1528 Salvia bowleyana HOM05D001363 ORTHO05D002212 9.3e-29 130.2 87 77.0
Haze_26077 Corylus avellana HOM05D001363 ORTHO05D002212 1.0e-27 126.7 86 79.1
Cfa002932 Carpinus fangiana HOM05D001363 ORTHO05D002212 5.1e-27 124.4 83 79.5
ClCG03G014730 Citrullus lanatus HOM05D001363 ORTHO05D002212 8.7e-27 123.6 83 77.1
TWI32G0277 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 8.7e-27 123.6 83 79.5
CiPaw.03G199800 Carya illinoinensis HOM05D001363 ORTHO05D002212 1.9e-26 122.5 86 76.7
DCAR_011907 Daucus carota HOM05D001363 ORTHO05D002212 1.9e-26 122.5 101 67.3
BcaC04g19474 Brassica carinata HOM05D001363 ORTHO05D002212 3.3e-26 121.7 91 69.2
Sed0023064 Sechium edule HOM05D001363 ORTHO05D002212 3.3e-26 121.7 81 79.0
CANSAT56G1728 Cannabis sativa HOM05D001363 ORTHO05D002212 4.3e-26 121.3 81 79.0
CANSAT56G4234 Cannabis sativa HOM05D001363 ORTHO05D002212 4.3e-26 121.3 81 79.0
Potri.006G135200 Populus trichocarpa HOM05D001363 ORTHO05D002212 4.3e-26 121.3 81 77.8
MELO3C015555.2 Cucumis melo HOM05D001363 ORTHO05D002212 7.4e-26 120.6 81 76.5
CsaV3_1G041430 Cucumis sativus L. HOM05D001363 ORTHO05D002212 7.4e-26 120.6 81 76.5
Actinidia30261 Actinidia chinensis HOM05D001363 ORTHO05D002212 1.3e-25 119.8 81 80.2
Gohir.A06G084300 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.3e-25 119.8 81 74.1
Peaxi162Scf00320g00008 Petunia axillaris HOM05D001363 ORTHO05D002212 1.3e-25 119.8 86 73.3
Sabra06G0106000 Salix brachista HOM05D001363 ORTHO05D002212 1.3e-25 119.8 87 72.4
MSTRG.26502 Avicennia marina HOM05D001363 ORTHO05D002212 1.6e-25 119.4 81 77.8
HanXRQChr04g0125381 Helianthus annuus HOM05D001363 ORTHO05D002212 1.6e-25 119.4 86 76.7
Solyc07g017540.4 Solanum lycopersicum HOM05D001363 ORTHO05D002212 1.6e-25 119.4 82 79.3
Sopen07g006340 Solanum pennellii HOM05D001363 ORTHO05D002212 1.6e-25 119.4 82 79.3
Duzib150G1587 Durio zibethinus HOM05D001363 ORTHO05D002212 2.1e-25 119.0 82 78.0
Sc08g0009210 Simmondsia chinensis HOM05D001363 ORTHO05D002212 2.8e-25 118.6 80 76.2
Actinidia39611 Actinidia chinensis HOM05D001363 ORTHO05D002212 3.7e-25 118.2 82 79.3
ATR0099G088 Amborella trichopoda HOM05D001363 ORTHO05D002212 4.8e-25 117.9 81 71.6
Cpa.g.sc344.4 Carica papaya HOM05D001363 ORTHO05D002212 4.8e-25 117.9 81 76.5
QL11p003297 Quercus lobata HOM05D001363 ORTHO05D002212 4.8e-25 117.9 81 75.3
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 6.2e-25 117.5 82 73.2
arahy.Tifrunner.gnm1.ann1.ZG5TLI Arachis hypogaea HOM05D001363 ORTHO05D002212 6.2e-25 117.5 82 73.2
Ca_21345_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 6.2e-25 117.5 81 74.1
Prupe.7G190800 Prunus persica HOM05D001363 ORTHO05D002212 6.2e-25 117.5 81 75.3
Sed0016085 Sechium edule HOM05D001363 ORTHO05D002212 6.2e-25 117.5 81 76.5
Lj4g0012557 Lotus japonicus HOM05D001363 ORTHO05D002212 1.1e-24 116.7 81 74.1
Hund08908 Selenicereus undatus HOM05D001363 ORTHO05D002212 1.1e-24 116.7 81 72.8
BcaB01g04765 Brassica carinata HOM05D001363 ORTHO05D002212 1.8e-24 115.9 81 74.1
CARHR192000 Cardamine hirsuta HOM05D001363 ORTHO05D002212 2.4e-24 115.5 81 74.1
MD15G1224500 Malus domestica HOM05D001363 ORTHO05D002212 2.4e-24 115.5 81 74.1
AL6G32360 Arabidopsis lyrata HOM05D001363 ORTHO05D002212 3.1e-24 115.2 81 72.8
Carub.0006s1914 Capsella rubella HOM05D001363 ORTHO05D002212 3.1e-24 115.2 81 72.8
Dinv42435 Davidia involucrata HOM05D001363 ORTHO05D002212 3.1e-24 115.2 80 77.5
Gohir.D06G081800 Gossypium hirsutum HOM05D001363 ORTHO05D002212 3.1e-24 115.2 81 72.8
Gorai.010G095300 Gossypium raimondii HOM05D001363 ORTHO05D002212 3.1e-24 115.2 81 72.8
BcaB08g37323 Brassica carinata HOM05D001363 ORTHO05D002212 4.1e-24 114.8 81 72.8
THA.LOC104815070 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 4.1e-24 114.8 88 68.2
C09p55350 Brassica napus HOM05D001035 ORTHO05D002212 5.3e-24 114.4 93 67.7
BolC9t58396H Brassica oleracea HOM05D001363 ORTHO05D002212 5.3e-24 114.4 93 67.7
AUR62025331 Chenopodium quinoa HOM05D001363 ORTHO05D002212 5.3e-24 114.4 81 75.3
AUR62028330 Chenopodium quinoa HOM05D001363 ORTHO05D002212 5.3e-24 114.4 81 75.3
Medtr4g124560 Medicago truncatula HOM05D001363 ORTHO05D002212 5.3e-24 114.4 81 74.1
TWI34G0642 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 5.3e-24 114.4 81 75.3
AT5G20850 Arabidopsis thaliana HOM05D001363 ORTHO05D002212 6.9e-24 114.0 81 72.8
EL10Ac8g18958 Beta vulgaris HOM05D001363 ORTHO05D002212 6.9e-24 114.0 81 75.3
Nn8g38520 Nelumbo nucifera HOM05D001363 ORTHO05D002212 6.9e-24 114.0 84 72.6
CSS0036462 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D002212 9.0e-24 113.6 86 72.1
Psat0s6099g0040 Pisum sativum HOM05D001363 ORTHO05D002212 9.0e-24 113.6 81 72.8
TPR.G12712 Trifolium pratense HOM05D001363 ORTHO05D002212 9.0e-24 113.6 81 72.8
Atru.chr7.1786 Acer truncatum HOM05D001363 ORTHO05D002212 1.2e-23 113.2 83 74.7
Eucgr.C00762 Eucalyptus grandis HOM05D001363 ORTHO05D002212 1.2e-23 113.2 81 74.1
PSO421G0332 Papaver somniferum HOM05D001363 ORTHO05D002212 1.2e-23 113.2 81 72.8
Thhalv10014015m.g Eutrema salsugineum HOM05D001363 ORTHO05D002212 1.5e-23 112.8 81 71.6
Phvul.003G126800 Phaseolus vulgaris HOM05D001363 ORTHO05D002212 1.5e-23 112.8 80 73.8
Sp6g23680 Schrenkiella parvula HOM05D001363 ORTHO05D002212 1.5e-23 112.8 81 75.3
GSVIVG01015002001 Vitis vinifera HOM05D001363 ORTHO05D002212 1.5e-23 112.8 81 74.1
PSO104G0038 Papaver somniferum HOM05D001363 ORTHO05D002212 2.0e-23 112.5 81 72.8
Lalb_Chr07g0181451 Lupinus albus HOM05D001363 ORTHO05D002212 2.6e-23 112.1 81 70.4
Glyma.13G115000 Glycine max HOM05D001363 ORTHO05D002212 3.4e-23 111.7 81 72.8
Lalb_Chr13g0299171 Lupinus albus HOM05D001363 ORTHO05D002212 3.4e-23 111.7 81 69.1
Rhsim05G0001700 Rhododendron simsii HOM05D001363 ORTHO05D002212 3.4e-23 111.7 81 77.8
A03p10300 Brassica napus HOM05D001363 ORTHO05D002212 5.8e-23 110.9 78 73.1
BolC3t13653H Brassica oleracea HOM05D001363 ORTHO05D002212 5.8e-23 110.9 78 73.1
BraA03t10341Z Brassica rapa HOM05D001363 ORTHO05D002212 5.8e-23 110.9 78 73.1
PGR142G1755 Punica granatum HOM05D001363 ORTHO05D002212 5.8e-23 110.9 81 72.8
RcHm_v2.0_Chr2g0096301 Rosa chinensis HOM05D001363 ORTHO05D002212 5.8e-23 110.9 81 72.8
TAR381G1732 Trochodendron aralioides HOM05D001363 ORTHO05D002212 5.8e-23 110.9 82 68.3
CDE06G2469 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 7.6e-23 110.5 81 67.9
vmacro03338 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 7.6e-23 110.5 81 75.3
CDE07G0130 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 1.0e-22 110.2 80 68.8
Migut.L01599 Erythranthe guttata HOM05D001363 ORTHO05D002212 1.0e-22 110.2 60 90.0
PSO104G0020 Papaver somniferum HOM05D001363 ORTHO05D002212 1.0e-22 110.2 81 71.6
FAN28G0572 Fragaria x ananassa HOM05D001363 ORTHO05D002212 1.3e-22 109.8 81 71.6
HPP92_005863 Vanilla planifolia HOM05D001363 ORTHO05D002212 1.3e-22 109.8 83 66.3
Glyma.17G045000 Glycine max HOM05D001363 ORTHO05D002212 1.7e-22 109.4 81 70.4
A10p19230 Brassica napus HOM05D001035 ORTHO05D002212 2.9e-22 108.6 79 69.6
BraA10t43999Z Brassica rapa HOM05D001363 ORTHO05D002212 2.9e-22 108.6 79 69.6
FvH4_1g09550 Fragaria vesca HOM05D001363 ORTHO05D002212 2.9e-22 108.6 81 70.4
FAN19G1681 Fragaria x ananassa HOM05D001363 ORTHO05D002212 2.9e-22 108.6 81 70.4
FAN23G1418 Fragaria x ananassa HOM05D001363 ORTHO05D002212 3.8e-22 108.2 81 71.6
TAR624G1167 Trochodendron aralioides HOM05D001363 ORTHO05D002212 3.8e-22 108.2 82 69.5
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 3.8e-22 108.2 81 70.4
Zm00001eb138190 Zea mays HOM05D001363 ORTHO05D002212 3.8e-22 108.2 64 79.7
FAN26G2497 Fragaria x ananassa HOM05D001363 ORTHO05D002212 6.5e-22 107.5 81 69.1
FAN26G3142 Fragaria x ananassa HOM05D001363 ORTHO05D002212 8.4e-22 107.1 81 69.1
Manes.03G045500 Manihot esculenta HOM05D001363 ORTHO05D002212 8.4e-22 107.1 88 68.2
SEGI_34777 Sequoiadendron giganteum HOM05D001363 ORTHO05D002212 8.4e-22 107.1 81 65.4
COL.COLO4_21194 Corchorus olitorius HOM05D001363 ORTHO05D002212 1.9e-21 105.9 81 67.9
VMungo1080G0804 Vigna mungo HOM05D001363 ORTHO05D002212 1.9e-21 105.9 83 67.5
MBI13_g01696_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 7.2e-21 104.0 62 80.6
Thecc.09G069100 Theobroma cacao HOM05D001363 ORTHO05D002212 9.3e-21 103.6 85 65.9
Os12g0497300 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 2.1e-20 102.4 58 81.0
Gohir.A05G036800 Gossypium hirsutum HOM05D001363 ORTHO05D002212 3.5e-20 101.7 81 67.9
Gohir.D05G038300 Gossypium hirsutum HOM05D001363 ORTHO05D002212 4.6e-20 101.3 82 65.9
Gorai.009G038800 Gossypium raimondii HOM05D001363 ORTHO05D002212 4.6e-20 101.3 84 66.7
ECA234G1240 Erigeron canadensis HOM05D001363 ORTHO05D002212 7.9e-20 100.5 82 72.0
Zm00001eb325310 Zea mays HOM05D001363 ORTHO05D002212 1.3e-19 99.8 62 74.2
Os11g0615800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 1.8e-19 99.4 59 79.7
PSO210G0844 Papaver somniferum HOM05D001363 ORTHO05D002212 6.7e-19 97.4 64 71.9
Lsat_1_v5_gn_8_85121 Lactuca sativa HOM05D001363 ORTHO05D002212 1.9e-18 95.9 87 65.5
Pp3c7_7920 Physcomitrium patens HOM05D001363 ORTHO05D002212 1.9e-18 95.9 63 68.3
SMO340G0124 Selaginella moellendorffii HOM05D001363 ORTHO05D002212 1.9e-18 95.9 65 72.3
arahy.Tifrunner.gnm1.ann1.ZI06BM Arachis hypogaea HOM05D001363 ORTHO05D002212 2.5e-18 95.5 55 81.8
Pp3c11_22000 Physcomitrium patens HOM05D001363 ORTHO05D002212 3.3e-18 95.1 63 69.8
unitig_8.g4424 Utricularia gibba HOM05D001363 ORTHO05D002212 4.3e-18 94.7 80 63.8
Mapoly0024s0069 Marchantia polymorpha HOM05D001363 ORTHO05D002212 7.4e-18 94.0 83 61.4
SHI18314 Sapria himalayana HOM05D001363 ORTHO05D002212 9.7e-18 93.6 63 73.0
Aqoxy7G00934 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 1.1e-16 90.1 83 60.2
AagrBONN_evm.TU.Sc2ySwM_362.1271 Anthoceros agrestis HOM05D001363 ORTHO05D002212 6.9e-16 87.4 67 59.7
Ciclev10010591m.g Citrus clementina HOM05D001363 ORTHO05D002212 1.5e-15 86.3 48 87.5
arahy.Tifrunner.gnm1.ann1.B4DJMI Arachis hypogaea HOM05D001363 ORTHO05D002212 1.0e-14 83.6 49 79.6
ECA236G1669 Erigeron canadensis HOM05D000783 ORTHO05D002212 5.0e-14 81.3 48 85.4
CBR_g49283 Chara braunii HOM05D001363 ORTHO05D002212 8.5e-14 80.5 72 61.1
Psat6g093760 Pisum sativum HOM05D001594 ORTHO05D002862 1.4e-13 79.7 56 64.3
Aa31LG1G13910 Aethionema arabicum HOM05D001363 ORTHO05D002212 5.5e-13 77.8 97 45.4
Psat0s2506g0080 Pisum sativum HOM05D000645 ORTHO05D000494 9.4e-13 77.0 56 62.5
Psat0s3647g0040 Pisum sativum HOM05D001594 ORTHO05D002862 9.4e-13 77.0 56 62.5
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.6e-12 76.3 51 66.7
Nitab4.5_0000055g0030 Nicotiana tabacum HOM05D001363 ORTHO05D002212 1.4e-11 73.2 91 47.3
FAN26G1588 Fragaria x ananassa HOM05D001363 ORTHO05D002212 3.0e-11 72.0 57 63.2
Nitab4.5_0009802g0010 Nicotiana tabacum HOM05D001363 ORTHO05D002212 3.0e-11 72.0 91 46.2
Psat0s2506g0120 Pisum sativum HOM05D001594 ORTHO05D002862 3.0e-11 72.0 56 58.9
Psat1g051720 Pisum sativum HOM05D000001 ORTHO05D000003 6.7e-11 70.9 46 65.2
Cre14.g622850 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D002212 1.1e-10 70.1 54 59.3
BcaB05g23906 Brassica carinata HOM05D001363 ORTHO05D002212 2.5e-10 68.9 44 75.0
PRCOL_00005006 Prasinoderma coloniale HOM05D001363 ORTHO05D002212 4.3e-10 68.2 62 46.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 9.7e-10 67.0 50 62.0
MCO02G336 Micromonas commoda HOM05D001363 ORTHO05D002212 1.4e-08 63.2 80 42.5
PRCOL_00001374 Prasinoderma coloniale HOM05D001363 ORTHO05D002212 3.1e-08 62.0 69 47.8
C09p73900 Brassica napus HOM05D002909 ORTHO05D000493 4.5e-07 58.2 50 62.0
MCO07G081 Micromonas commoda HOM05D001363 ORTHO05D002212 4.5e-07 58.2 64 46.9
HPP92_016617 Vanilla planifolia HOM05D001363 ORTHO05D034802 7.7e-07 57.4 55 47.3
arahy.Tifrunner.gnm1.ann1.2NMS27 Arachis hypogaea HOM05D001363 ORTHO05D002212 1.7e-06 56.2 33 75.8
Manes.03G172700 Manihot esculenta HOM05D001363 ORTHO05D002212 8.5e-06 53.9 79 44.3


User provided reference genes

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