Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 1.2e-282 975.7 464 100.0
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 3.1e-193 678.7 466 71.0
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 5.7e-187 657.9 457 69.6
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 7.5e-187 657.5 432 72.0
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 3.7e-186 655.2 457 67.2
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 8.3e-186 654.1 431 71.0
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.4e-185 653.3 456 68.2
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 7.0e-185 651.0 511 64.6
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 3.5e-184 648.7 459 67.1
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.5e-184 648.7 461 67.9
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 4.5e-184 648.3 462 66.0
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 7.7e-184 647.5 446 68.6
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.9e-183 645.6 455 67.5
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 3.8e-183 645.2 458 66.8
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 1.9e-182 642.9 459 67.3
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 3.3e-182 642.1 454 67.2
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 7.2e-182 641.0 456 67.1
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 1.2e-181 640.2 446 67.5
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 1.6e-181 639.8 463 66.3
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 2.8e-181 639.0 452 67.5
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 1.0e-180 637.1 407 72.7
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.8e-180 636.3 455 67.0
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 3.4e-179 632.1 428 69.2
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 7.5e-179 630.9 463 65.2
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 7.5e-179 630.9 462 66.2
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.9e-178 629.0 462 66.7
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 4.9e-178 628.2 458 65.3
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 1.8e-177 626.3 461 64.6
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 2.4e-177 625.9 463 66.3
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 3.2e-177 625.5 454 65.4
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 3.2e-177 625.5 459 65.4
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 4.1e-177 625.2 461 64.6
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 5.4e-177 624.8 460 66.1
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 9.2e-177 624.0 458 65.1
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 3.5e-176 622.1 466 65.5
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 3.5e-176 622.1 462 64.3
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 2.3e-175 619.4 458 66.6
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 2.9e-175 619.0 464 65.5
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 8.6e-175 617.5 451 65.2
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.5e-174 616.7 463 64.8
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.9e-174 616.3 454 65.6
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 4.3e-174 615.1 463 63.7
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 2.1e-173 612.8 461 62.9
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 3.6e-173 612.1 451 64.7
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 4.7e-173 611.7 465 63.2
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 8.0e-173 610.9 447 66.9
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 4.0e-172 608.6 454 65.2
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 2.6e-171 605.9 452 65.7
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 7.5e-171 604.4 465 62.6
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 2.9e-170 602.4 451 63.9
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 6.4e-170 601.3 454 63.7
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 4.1e-169 598.6 455 63.1
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 1.2e-168 597.0 448 62.9
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 2.7e-168 595.9 455 62.0
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 3.3e-166 589.0 463 62.0
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 7.3e-166 587.8 390 70.8
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 2.1e-165 586.3 426 65.7
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-164 583.2 451 61.2
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 4.0e-164 582.0 392 69.9
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 5.2e-164 581.6 426 63.1
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 4.9e-162 575.1 465 59.6
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 2.4e-161 572.8 457 59.3
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 4.1e-161 572.0 458 60.0
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 4.1e-161 572.0 457 60.4
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 9.2e-161 570.9 454 63.0
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 7.8e-160 567.8 460 59.3
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.7e-159 566.6 456 59.9
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 3.0e-159 565.8 458 59.8
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 3.9e-159 565.5 454 60.6
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 8.6e-159 564.3 468 59.0
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.1e-158 563.9 466 59.2
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 1.5e-158 563.5 451 59.0
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.9e-158 563.1 471 59.9
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 4.3e-158 562.0 458 59.2
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 1.6e-157 560.1 462 58.9
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 2.1e-157 559.7 464 59.1
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 2.1e-157 559.7 446 60.1
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 6.2e-157 558.1 452 61.3
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.1e-156 557.4 460 62.0
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 4.4e-155 552.0 449 59.5
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 2.9e-154 549.3 463 59.0
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 6.4e-154 548.1 391 64.7
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.1e-153 547.4 481 57.2
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 7.1e-153 544.7 415 63.4
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 2.1e-152 543.1 473 57.3
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 4.6e-152 542.0 449 58.1
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.7e-151 540.0 473 57.1
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 5.1e-151 538.5 420 60.5
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.4e-148 530.4 413 62.5
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.4e-148 529.6 413 62.5
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 6.4e-146 521.5 412 62.9
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 7.3e-142 508.1 487 54.8
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 4.4e-139 498.8 345 65.5
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 3.2e-137 492.7 456 54.6
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 1.6e-133 480.3 380 60.5
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 4.8e-133 478.8 424 55.2
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.2e-131 474.2 463 51.6
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-128 464.2 456 52.9
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 3.9e-127 459.1 364 62.6
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.3e-125 454.1 394 57.9
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.6e-125 453.8 467 49.3
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 1.6e-125 453.8 462 49.1
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 4.8e-125 452.2 352 62.8
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.4e-124 450.7 415 53.5
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 4.0e-124 449.1 394 57.6
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 5.3e-124 448.7 415 53.7
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.6e-123 446.4 444 52.7
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 2.6e-123 446.4 454 50.4
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.5e-122 441.8 407 54.1
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-120 437.6 454 49.8
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 6.0e-120 435.3 364 58.2
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 9.3e-113 411.4 410 52.7
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 1.2e-107 394.4 493 43.6
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.4e-107 392.9 292 62.7
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-105 387.9 461 45.6
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 5.1e-103 379.0 199 85.4
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 2.0e-102 377.1 300 61.7
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 2.8e-101 373.2 319 59.9
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 8.5e-98 361.7 315 58.7
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.6e-96 357.5 328 50.0
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 2.7e-96 356.7 199 79.4
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 8.8e-95 351.7 458 42.1
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.5e-89 332.4 386 48.4
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.5e-86 322.0 317 52.1
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-84 316.6 200 72.0
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.5e-83 313.2 219 65.3
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-81 307.8 250 60.4
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 3.1e-76 290.0 167 76.6
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 8.0e-72 275.4 447 37.4
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.2e-70 271.6 341 39.6
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 8.3e-69 265.4 165 73.3
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-58 230.7 142 72.5
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-58 230.7 142 72.5
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-58 230.7 142 72.5
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-57 227.3 142 71.8
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.5e-57 225.3 239 50.2
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.7e-51 207.2 199 53.8
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 2.3e-47 194.1 116 73.3
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 4.4e-46 189.9 297 40.4
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-42 177.6 233 41.6
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.3e-41 172.6 96 75.0
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 4.7e-40 169.9 86 87.2
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.1e-36 158.7 108 66.7
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 7.6e-30 136.0 145 46.9
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 5.4e-28 129.8 84 66.7
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-24 117.9 62 80.6
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-23 115.5 79 67.1
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 1.5e-17 95.1 68 70.6
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 5.8e-14 83.2 43 83.7
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 8.4e-13 79.3 56 67.9
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 5.5e-12 76.6 76 43.4
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 3.5e-11 73.9 64 54.7
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.5e-11 73.9 119 43.7
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 1.5e-09 68.6 58 55.2
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 3.3e-09 67.4 163 32.5
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.2e-08 63.2 59 47.5
CSS0024103 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 6.9e-07 59.7 66 57.6
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 9.0e-07 59.3 193 29.5


User provided reference genes

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