Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 6.2e-158 560.8 302 100.0
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 4.8e-142 508.1 302 89.4
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 6.9e-141 504.2 302 87.7
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 2.0e-140 502.7 302 88.7
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 3.4e-140 501.9 300 88.7
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 3.4e-140 501.9 302 88.4
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.0e-139 500.4 301 87.7
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.2e-139 499.2 300 89.0
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 6.7e-136 487.6 302 87.4
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.3e-135 485.3 300 87.3
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 3.7e-134 481.9 303 86.1
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 3.7e-134 481.9 301 81.7
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 2.4e-133 479.2 306 81.7
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 2.4e-133 479.2 303 84.8
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 1.5e-132 476.5 301 86.7
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 2.6e-132 475.7 304 83.6
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 3.4e-132 475.3 308 81.2
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.7e-131 473.0 302 82.8
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 2.9e-131 472.2 310 80.3
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 6.5e-131 471.1 303 81.5
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.1e-130 470.3 304 80.9
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.1e-130 470.3 302 82.5
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.9e-130 469.5 303 84.2
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 2.5e-130 469.2 304 80.6
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 2.5e-130 469.2 302 79.8
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 2.5e-130 469.2 306 84.0
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 3.2e-130 468.8 303 82.2
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 3.2e-130 468.8 303 82.5
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.1e-130 467.6 304 80.6
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.1e-130 467.6 304 80.6
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 7.1e-130 467.6 284 88.4
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 7.1e-130 467.6 304 80.6
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 9.3e-130 467.2 308 81.2
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.2e-129 466.8 302 80.5
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.6e-129 466.5 303 83.2
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 2.1e-129 466.1 305 80.3
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 4.6e-129 464.9 303 80.2
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 6.1e-129 464.5 304 80.3
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 7.9e-129 464.2 308 82.5
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 7.9e-129 464.2 306 81.7
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 1.3e-128 463.4 298 82.2
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.3e-128 463.4 304 79.9
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.3e-128 463.4 306 80.4
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.8e-128 463.0 305 79.3
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.3e-128 462.6 311 79.1
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 3.0e-128 462.2 301 80.7
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 3.9e-128 461.8 303 78.5
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 6.7e-128 461.1 302 83.4
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 8.7e-128 460.7 302 81.8
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 1.1e-127 460.3 305 83.0
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.5e-127 459.9 302 82.8
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.9e-127 459.5 302 81.8
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.9e-127 459.5 302 82.1
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.5e-127 459.1 304 79.6
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 3.3e-127 458.8 307 80.8
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 5.7e-127 458.0 303 80.2
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 5.7e-127 458.0 303 82.2
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.7e-127 458.0 303 81.8
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 5.7e-127 458.0 303 81.8
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 7.4e-127 457.6 302 78.8
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 7.4e-127 457.6 304 79.6
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.3e-126 456.8 305 81.3
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.3e-126 456.8 303 82.2
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 2.2e-126 456.1 302 81.8
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 3.7e-126 455.3 303 82.5
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 4.8e-126 454.9 305 78.7
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 1.4e-125 453.4 302 82.8
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.8e-125 453.0 302 78.8
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.2e-124 450.3 306 78.4
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-124 450.3 303 80.5
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.5e-124 449.9 302 78.1
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.0e-124 449.5 302 79.1
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 3.4e-124 448.7 302 78.5
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 7.7e-124 447.6 307 78.8
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.3e-123 446.8 296 79.7
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.2e-123 446.0 305 79.3
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 5.0e-123 444.9 307 77.2
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 5.0e-123 444.9 307 77.2
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 5.0e-123 444.9 307 77.2
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 5.0e-123 444.9 305 77.0
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 6.5e-123 444.5 306 77.1
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 8.5e-123 444.1 305 77.4
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.5e-123 444.1 305 77.4
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.1e-122 443.7 304 77.3
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 1.9e-122 443.0 304 76.6
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.5e-122 442.6 302 81.1
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 4.2e-122 441.8 302 76.8
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 4.2e-122 441.8 311 75.6
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 7.2e-122 441.0 302 76.2
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 9.4e-122 440.7 302 76.5
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.4e-122 440.7 305 77.0
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 5.1e-120 434.9 303 77.2
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 6.7e-120 434.5 302 77.5
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 3.3e-119 432.2 302 76.5
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 9.7e-119 430.6 302 76.2
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 2.2e-118 429.5 302 75.8
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 8.2e-118 427.6 303 78.9
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.4e-117 426.8 302 77.2
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.8e-117 426.4 302 77.2
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 4.1e-117 425.2 304 76.3
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 9.1e-117 424.1 302 74.8
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 4.5e-116 421.8 303 78.2
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 3.8e-115 418.7 303 74.6
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 5.0e-115 418.3 299 75.6
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.9e-114 416.4 303 74.3
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 2.5e-114 416.0 302 75.2
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 2.5e-114 416.0 302 75.2
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 2.5e-114 416.0 302 75.2
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 3.1e-109 399.1 304 72.0
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 7.0e-109 397.9 312 69.9
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 2.2e-107 392.9 303 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 2.1e-105 386.3 299 69.2
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.1e-105 386.3 281 76.2
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 9.7e-103 377.5 305 71.8
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 4.8e-102 375.2 302 66.6
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.5e-95 353.6 290 67.9
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 4.4e-95 352.1 319 60.8
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 9.4e-90 334.3 195 83.1
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.6e-89 333.6 304 57.9
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.2e-86 323.2 252 72.2
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 2.1e-81 306.6 298 56.4
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 5.2e-80 302.0 193 79.3
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.4e-79 299.3 303 54.5
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.3e-78 297.4 252 66.3
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.3e-78 297.4 302 60.3
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 1.1e-69 267.7 301 52.2
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.6e-68 263.8 196 75.5
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 3.9e-67 259.2 134 94.8
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.9e-61 240.4 276 56.2
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-58 230.3 225 62.7
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.7e-54 217.2 204 63.2
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.1e-50 204.5 303 45.5
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 4.7e-49 199.1 228 55.7
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 8.1e-49 198.4 194 61.9
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 8.1e-49 198.4 164 70.1
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.8e-48 197.2 294 46.3
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 6.4e-46 188.7 193 60.6
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 1.1e-40 171.4 197 47.7
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 3.8e-38 162.9 111 76.6
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.6e-36 157.5 104 72.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.0e-35 154.8 182 51.6
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.7e-30 137.5 102 66.7
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.1e-29 134.8 219 44.7
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 6.5e-22 109.0 77 70.1
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 8.4e-22 108.6 302 35.1
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.1e-21 108.2 86 66.3
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.9e-21 107.5 152 49.3
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 2.5e-21 107.1 302 35.1
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 7.1e-21 105.5 61 78.7
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 2.5e-18 97.1 64 70.3
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 1.3e-17 94.7 115 55.7
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 2.8e-17 93.6 116 58.6
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 6.5e-14 82.4 97 56.7
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 8.4e-14 82.0 96 62.5
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 1.8e-11 74.3 81 59.3
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 6.7e-11 72.4 128 44.5
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 3.8e-06 56.6 35 80.0


User provided reference genes

Program Settings