Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 7.6e-233 810.1 393 100.0
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 2.1e-145 519.6 332 78.0
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 2.7e-145 519.2 332 76.5
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.3e-139 500.4 334 74.3
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.3e-135 485.7 332 71.4
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 7.4e-135 484.6 339 72.0
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 9.6e-135 484.2 330 72.7
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 8.1e-134 481.1 322 72.0
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.8e-133 479.9 332 71.1
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 9.0e-133 477.6 331 68.9
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 2.6e-132 476.1 321 73.2
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 3.4e-132 475.7 335 69.0
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.9e-130 469.9 333 72.1
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.2e-129 467.2 329 71.1
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.6e-129 466.8 329 70.2
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.9e-127 459.9 330 69.7
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 4.8e-126 455.3 329 70.2
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.8e-125 453.4 318 67.3
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.8e-125 453.4 380 60.0
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 9.0e-125 451.1 329 68.1
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.4e-124 449.1 329 66.3
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 7.6e-124 448.0 329 66.3
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.7e-123 446.8 321 67.0
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.7e-123 446.8 327 67.9
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.9e-123 446.0 327 66.7
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 3.8e-123 445.7 326 66.9
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 4.9e-123 445.3 327 66.4
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 4.9e-123 445.3 331 68.3
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.4e-122 443.7 326 66.3
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.5e-122 443.0 320 68.4
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.7e-121 439.5 321 66.7
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 1.8e-120 436.8 322 67.1
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 2.3e-120 436.4 323 65.9
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 2.3e-120 436.4 323 65.9
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 3.9e-120 435.6 328 65.5
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 8.7e-120 434.5 322 64.3
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 8.7e-120 434.5 324 66.7
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 1.1e-119 434.1 327 64.5
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 2.5e-119 433.0 327 66.7
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.3e-119 432.6 321 65.7
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 3.3e-119 432.6 402 57.5
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 4.3e-119 432.2 321 65.7
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 5.7e-119 431.8 322 64.9
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 1.3e-118 430.6 322 64.6
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.6e-118 430.3 324 67.0
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.6e-118 430.3 457 52.7
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.1e-118 429.9 332 64.2
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 3.7e-118 429.1 326 64.4
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 6.3e-118 428.3 310 68.1
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.1e-117 427.6 323 66.3
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 5.3e-117 425.2 330 63.3
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 6.9e-117 424.9 331 64.0
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 9.0e-117 424.5 321 64.8
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 9.0e-117 424.5 320 64.1
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 3.4e-116 422.5 316 64.9
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 4.5e-116 422.2 331 63.4
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.0e-115 421.0 324 65.7
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.3e-115 420.6 321 63.9
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 8.5e-115 417.9 322 64.9
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 8.5e-115 417.9 322 64.6
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 5.5e-114 415.2 330 63.0
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 7.2e-114 414.8 321 63.6
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.2e-113 414.1 321 63.6
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.6e-113 413.7 321 62.6
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.6e-113 413.7 330 63.6
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.1e-113 413.3 321 63.2
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 3.0e-112 409.5 321 62.9
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 3.0e-112 409.5 330 63.0
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 8.7e-112 407.9 321 62.6
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.5e-111 407.1 318 62.3
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 2.5e-111 406.4 318 61.9
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 4.3e-111 405.6 324 62.7
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 4.3e-111 405.6 320 63.1
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.2e-110 403.3 332 61.4
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.7e-110 402.5 321 61.7
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 3.7e-110 402.5 319 61.8
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 3.7e-110 402.5 335 61.8
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.8e-109 400.2 319 61.4
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.8e-109 400.2 319 61.8
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.8e-109 400.2 319 61.8
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.4e-109 399.8 324 61.4
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 2.4e-109 399.8 406 52.7
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 9.1e-109 397.9 321 60.4
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 9.1e-109 397.9 318 61.6
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.2e-108 397.5 318 61.6
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 2.6e-108 396.4 335 61.2
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 5.9e-108 395.2 328 61.0
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 7.7e-108 394.8 321 60.1
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 6.5e-107 391.7 281 67.3
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.1e-106 391.0 332 62.3
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 1.2e-105 387.5 317 59.9
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 6.1e-105 385.2 328 59.8
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 6.3e-102 375.2 331 59.2
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 5.9e-100 368.6 334 59.0
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.9e-99 366.3 362 52.8
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.7e-97 359.8 331 56.5
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 3.6e-97 359.4 293 63.5
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 3.9e-96 355.9 279 60.9
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 4.1e-93 345.9 308 56.5
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.6e-92 344.0 335 53.7
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 3.8e-91 339.3 329 53.8
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 4.2e-90 335.9 318 56.3
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.3e-88 330.1 354 50.0
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.2e-87 327.8 291 57.7
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 3.3e-87 326.2 207 75.8
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 2.8e-86 323.2 327 49.5
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 4.8e-86 322.4 326 51.8
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.2e-82 309.7 216 71.8
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 2.7e-81 306.6 355 48.7
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 4.2e-74 282.7 394 39.8
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 1.2e-73 281.2 183 72.7
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 1.5e-71 274.2 234 59.8
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.3e-70 271.2 177 71.8
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 3.8e-67 259.6 359 40.1
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.9e-66 257.3 344 40.7
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 2.3e-64 250.4 327 41.9
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.5e-58 230.3 123 82.9
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 2.2e-54 217.2 258 48.4
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.2e-54 217.2 258 48.4
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 2.3e-51 207.2 202 53.0
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 3.9e-51 206.5 202 53.0
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 3.9e-43 179.9 100 83.0
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.5e-42 177.2 94 83.0
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 8.1e-41 172.2 203 52.2
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 7.6e-39 165.6 182 52.2
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 6.0e-36 156.0 83 83.1
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 7.8e-28 129.0 96 56.2
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 6.6e-27 125.9 119 58.0
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 5.3e-24 116.3 129 54.3
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.5e-18 98.2 124 49.2
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.4e-16 90.9 94 54.3
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.3e-14 85.1 108 37.0
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.8e-11 74.7 43 81.4


User provided reference genes

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