Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.8e-274 948.7 501 100.0
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 2.7e-251 871.7 508 90.9
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 2.2e-240 835.5 510 85.9
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 4.1e-239 831.2 510 85.7
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 4.4e-233 811.2 510 83.1
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 5.9e-230 800.8 510 83.7
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 2.6e-225 785.4 505 82.2
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 2.8e-224 781.9 521 80.6
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 7.2e-220 767.3 496 82.5
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 5.4e-215 751.1 490 82.4
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 1.4e-210 736.5 496 77.6
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 1.8e-210 736.1 513 76.8
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 2.0e-209 732.6 516 76.7
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 6.0e-206 721.1 496 76.0
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 2.2e-200 702.6 510 73.3
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 1.4e-199 699.9 509 73.3
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 1.9e-199 699.5 496 72.6
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 9.2e-199 697.2 508 72.6
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 6.0e-198 694.5 521 70.6
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 1.7e-197 693.0 449 78.6
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 6.6e-197 691.0 507 71.8
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 8.6e-197 690.6 445 79.8
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 2.5e-196 689.1 498 72.5
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 3.3e-196 688.7 497 71.6
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 3.3e-196 688.7 504 72.2
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 4.3e-196 688.3 461 76.6
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 1.2e-195 686.8 507 71.6
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 2.8e-195 685.6 507 71.6
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 6.2e-195 684.5 500 72.4
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 5.2e-194 681.4 452 76.5
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.6e-193 679.1 528 69.1
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 7.5e-193 677.6 495 70.5
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 3.7e-192 675.2 452 77.4
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 3.7e-192 675.2 496 70.4
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 8.3e-192 674.1 495 70.7
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 1.4e-191 673.3 499 70.5
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 9.2e-191 670.6 474 74.1
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 2.7e-190 669.1 464 74.6
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 4.6e-190 668.3 504 69.8
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 7.8e-190 667.5 497 70.2
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 2.3e-189 666.0 501 69.3
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 3.9e-189 665.2 509 69.5
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 5.1e-189 664.8 453 74.4
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 5.1e-189 664.8 486 71.8
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 1.1e-188 663.7 482 70.3
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 2.5e-188 662.5 512 68.6
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 3.3e-188 662.1 447 76.3
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 3.3e-188 662.1 446 74.7
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 4.3e-188 661.8 488 69.5
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 2.4e-186 656.0 486 70.4
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 5.2e-186 654.8 513 66.5
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 2.0e-185 652.9 446 74.0
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.0e-185 652.9 506 68.4
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 3.4e-185 652.1 471 69.6
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 3.4e-185 652.1 445 74.6
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 4.4e-185 651.7 516 66.5
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 5.8e-185 651.4 447 73.8
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 7.6e-185 651.0 523 65.0
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 6.4e-184 647.9 473 69.6
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 1.9e-183 646.4 448 73.2
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 3.2e-183 645.6 447 74.5
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 5.4e-183 644.8 565 63.2
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 9.2e-183 644.0 446 72.9
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 1.2e-182 643.7 471 70.7
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.1e-182 642.9 440 73.6
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 4.6e-182 641.7 516 65.7
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 7.8e-182 641.0 471 68.2
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 1.0e-181 640.6 447 71.1
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 2.3e-181 639.4 447 71.4
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 2.3e-181 639.4 447 72.5
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 8.7e-181 637.5 447 70.7
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 8.7e-181 637.5 506 67.6
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 1.1e-180 637.1 447 70.9
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 1.1e-180 637.1 450 72.0
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 1.9e-180 636.3 447 70.7
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.9e-180 636.3 472 69.9
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 2.5e-180 636.0 506 67.0
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 2.5e-180 636.0 445 73.0
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 4.3e-180 635.2 511 65.4
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 4.3e-180 635.2 447 70.9
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 4.3e-180 635.2 447 70.9
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 9.6e-180 634.0 449 73.1
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 9.6e-180 634.0 449 73.1
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 9.6e-180 634.0 445 71.9
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 1.2e-179 633.6 447 70.5
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 2.8e-179 632.5 481 67.8
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 3.6e-179 632.1 447 72.3
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 6.2e-179 631.3 501 65.1
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 1.8e-178 629.8 447 70.0
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 1.2e-177 627.1 509 64.8
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.3e-176 623.6 503 65.6
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.3e-176 623.6 504 66.1
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 1.7e-176 623.2 456 69.7
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 1.7e-176 623.2 507 65.3
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 8.4e-176 620.9 507 65.1
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 1.1e-175 620.5 507 65.3
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 1.4e-175 620.2 515 64.7
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.4e-175 619.4 444 70.5
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 3.2e-175 619.0 443 71.1
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 2.7e-174 615.9 449 68.6
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 1.7e-173 613.2 439 72.9
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 3.3e-172 609.0 445 70.8
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 5.4e-167 591.7 464 68.3
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 8.1e-163 577.8 447 66.0
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 8.1e-163 577.8 443 66.8
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 2.9e-160 569.3 449 64.6
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 5.1e-157 558.5 475 59.6
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 1.1e-156 557.4 454 65.4
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 3.4e-153 545.8 504 59.3
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 6.3e-147 525.0 387 69.0
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 1.2e-145 520.8 515 59.4
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 5.0e-144 515.4 311 82.3
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 4.2e-143 512.3 449 61.9
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 2.1e-142 510.0 450 57.3
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 1.1e-138 497.7 447 57.7
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 3.1e-138 496.1 445 62.7
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.3e-136 490.7 497 56.5
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 9.4e-135 484.6 501 52.5
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 9.1e-130 468.0 480 52.9
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 8.0e-110 401.7 312 68.3
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 7.2e-103 378.6 233 79.4
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 3.5e-81 306.6 427 43.8
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 6.0e-81 305.8 444 39.0
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 1.1e-77 295.0 243 62.1
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 1.1e-69 268.5 371 45.0
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 5.2e-69 266.2 205 66.3
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 2.4e-66 257.3 249 57.4
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 2.7e-65 253.8 174 73.6
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 1.3e-62 245.0 352 45.2
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 4.0e-61 240.0 469 32.0
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 5.6e-55 219.5 315 37.1
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.8e-48 198.0 179 61.5
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 5.1e-48 196.4 405 36.8
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 4.8e-38 163.3 132 64.4
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 6.2e-38 162.9 172 55.2
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 7.1e-34 149.4 96 76.0
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 8.8e-24 115.9 78 73.1
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 4.3e-23 113.6 66 80.3
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 4.1e-21 107.1 57 89.5
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 2.0e-20 104.8 132 52.3
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 3.8e-19 100.5 70 68.6
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 9.4e-18 95.9 131 48.9
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 5.1e-16 90.1 85 61.2
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 2.2e-14 84.7 64 65.6
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 3.1e-13 80.9 49 77.6
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 3.1e-13 80.9 49 77.6
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 1.1e-10 72.4 68 61.8


User provided reference genes

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