Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P287T13 Lonicera japonica HOM05D003359 ORTHO05D019577 1.5e-32 142.1 64 100.0
Lj3C275T6 Lonicera japonica HOM05D003359 ORTHO05D004472 1.4e-30 135.6 64 95.3
Lj6C814T12 Lonicera japonica HOM05D003359 ORTHO05D004472 4.9e-28 127.1 63 90.5
Actinidia37443 Actinidia chinensis HOM05D003359 ORTHO05D004472 6.6e-25 116.7 63 81.0
TWI18G0898 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 1.5e-24 115.5 63 81.0
QL03p057181 Quercus lobata HOM05D003359 ORTHO05D004472 2.5e-24 114.8 63 77.8
Medtr8g089740 Medicago truncatula HOM05D003359 ORTHO05D004472 4.3e-24 114.0 63 74.6
Medtr8g089745 Medicago truncatula HOM05D003359 ORTHO05D004472 4.3e-24 114.0 63 74.6
Ciclev10030938m.g Citrus clementina HOM05D003359 ORTHO05D004472 7.3e-24 113.2 63 79.4
Sc14g0008780 Simmondsia chinensis HOM05D003359 ORTHO05D004472 1.2e-23 112.5 63 76.2
Prupe.1G247000 Prunus persica HOM05D003359 ORTHO05D004472 1.6e-23 112.1 63 77.8
Solyc05g013720.3 Solanum lycopersicum HOM05D003359 ORTHO05D004472 1.6e-23 112.1 63 73.0
Sopen05g008640 Solanum pennellii HOM05D003359 ORTHO05D004472 1.6e-23 112.1 63 73.0
Lj3A1060T75 Lonicera japonica HOM05D003359 ORTHO05D004472 2.1e-23 111.7 63 76.2
PGSC0003DMG400011728 Solanum tuberosum HOM05D003359 ORTHO05D004472 3.6e-23 110.9 63 71.4
CSS0009419 Camellia sinensis var. sinensis HOM05D003359 ORTHO05D004472 4.7e-23 110.5 63 76.2
CANSAT01G0511 Cannabis sativa HOM05D003359 ORTHO05D004472 4.7e-23 110.5 63 73.0
Migut.K00614 Erythranthe guttata HOM05D003359 ORTHO05D004472 4.7e-23 110.5 63 77.8
MD13G1098300 Malus domestica HOM05D003359 ORTHO05D004472 4.7e-23 110.5 63 74.6
Manes.13G022100 Manihot esculenta HOM05D003359 ORTHO05D004472 4.7e-23 110.5 63 76.2
Potri.010G048400 Populus trichocarpa HOM05D003359 ORTHO05D004472 4.7e-23 110.5 63 74.6
QL03p056989 Quercus lobata HOM05D003359 ORTHO05D004472 6.1e-23 110.2 63 73.0
QL03p057097 Quercus lobata HOM05D003359 ORTHO05D004472 8.0e-23 109.8 63 73.0
GSVIVG01000554001 Vitis vinifera HOM05D003359 ORTHO05D005275 8.0e-23 109.8 63 76.2
CiPaw.05G179800 Carya illinoinensis HOM05D003359 ORTHO05D004472 1.0e-22 109.4 63 74.6
CiPaw.11G025500 Carya illinoinensis HOM05D003359 ORTHO05D004472 1.0e-22 109.4 63 74.6
PSO478G4543 Papaver somniferum HOM05D003359 ORTHO05D004472 1.0e-22 109.4 63 74.6
TAR622G1186 Trochodendron aralioides HOM05D003359 ORTHO05D004472 1.0e-22 109.4 63 73.0
MD16G1099400 Malus domestica HOM05D003359 ORTHO05D004472 1.4e-22 109.0 63 73.0
Nn4g22564 Nelumbo nucifera HOM05D003359 ORTHO05D004472 1.4e-22 109.0 63 74.6
PSO017G1803 Papaver somniferum HOM05D003359 ORTHO05D004472 1.4e-22 109.0 63 74.6
QL08p013016 Quercus lobata HOM05D003359 ORTHO05D019577 1.4e-22 109.0 63 74.6
THA.LOC104805279 Tarenaya hassleriana HOM05D003359 ORTHO05D004472 1.4e-22 109.0 63 74.6
Aqoxy3G01254 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 1.8e-22 108.6 63 74.6
CAN.G272.4 Capsicum annuum HOM05D003359 ORTHO05D004472 1.8e-22 108.6 63 71.4
QL03p057173 Quercus lobata HOM05D003359 ORTHO05D004472 1.8e-22 108.6 63 74.6
RcHm_v2.0_Chr4g0433401 Rosa chinensis HOM05D003359 ORTHO05D004472 1.8e-22 108.6 63 69.8
Sed0021427 Sechium edule HOM05D003359 ORTHO05D004472 1.8e-22 108.6 63 71.4
Hund06039 Selenicereus undatus HOM05D003359 ORTHO05D004472 1.8e-22 108.6 63 73.0
MD13G1098400 Malus domestica HOM05D003359 ORTHO05D004472 2.3e-22 108.2 63 69.8
TPR.G6289 Trifolium pratense HOM05D003359 ORTHO05D004472 2.3e-22 108.2 63 73.0
Atru.chr11.2161 Acer truncatum HOM05D003359 ORTHO05D004472 3.0e-22 107.8 63 73.0
ClCG08G017630 Citrullus lanatus HOM05D003359 ORTHO05D004472 3.0e-22 107.8 63 71.4
Nitab4.5_0002787g0030 Nicotiana tabacum HOM05D003359 ORTHO05D004472 3.0e-22 107.8 63 69.8
Potri.008G185300 Populus trichocarpa HOM05D003359 ORTHO05D004472 3.0e-22 107.8 63 71.4
Potri.010G048300 Populus trichocarpa HOM05D003359 ORTHO05D004472 3.0e-22 107.8 63 71.4
Glyma.05G174200 Glycine max HOM05D003359 ORTHO05D004472 4.0e-22 107.5 63 73.0
Medtr8g089725 Medicago truncatula HOM05D003359 ORTHO05D004472 4.0e-22 107.5 63 71.4
Medtr8g089735 Medicago truncatula HOM05D003359 ORTHO05D004472 4.0e-22 107.5 63 71.4
Nn3g16675 Nelumbo nucifera HOM05D003359 ORTHO05D004472 4.0e-22 107.5 63 71.4
Peaxi162Scf00128g00456 Petunia axillaris HOM05D003359 ORTHO05D004472 4.0e-22 107.5 63 71.4
AL5G15150 Arabidopsis lyrata HOM05D003359 ORTHO05D004472 5.2e-22 107.1 63 73.0
MELO3C010698.2 Cucumis melo HOM05D003359 ORTHO05D004472 5.2e-22 107.1 63 69.8
FvH4_4g25930 Fragaria vesca HOM05D003359 ORTHO05D004472 5.2e-22 107.1 63 69.8
FAN07G2501 Fragaria x ananassa HOM05D003359 ORTHO05D004472 5.2e-22 107.1 63 69.8
FAN12G2341 Fragaria x ananassa HOM05D003359 ORTHO05D004472 5.2e-22 107.1 63 69.8
FAN12G3248 Fragaria x ananassa HOM05D003359 ORTHO05D004472 5.2e-22 107.1 63 69.8
Gohir.D02G157400 Gossypium hirsutum HOM05D003359 ORTHO05D004472 5.2e-22 107.1 63 71.4
Gorai.005G176600 Gossypium raimondii HOM05D003359 ORTHO05D004472 5.2e-22 107.1 63 71.4
Carub.0005s0430 Capsella rubella HOM05D003359 ORTHO05D004472 6.8e-22 106.7 63 71.4
Cfa009233 Carpinus fangiana HOM05D003359 ORTHO05D004472 6.8e-22 106.7 63 74.6
Cc11_g15950 Coffea canephora HOM05D003359 ORTHO05D004472 6.8e-22 106.7 63 73.0
Haze_12269 Corylus avellana HOM05D003359 ORTHO05D006537 6.8e-22 106.7 63 74.6
CsaV3_2G025010 Cucumis sativus L. HOM05D003359 ORTHO05D004472 6.8e-22 106.7 63 69.8
Glyma.11G243600 Glycine max HOM05D003359 ORTHO05D004472 6.8e-22 106.7 63 71.4
QL03p057135 Quercus lobata HOM05D003359 ORTHO05D004472 6.8e-22 106.7 63 73.0
Aa31LG2G6140 Aethionema arabicum HOM05D003359 ORTHO05D006537 8.9e-22 106.3 63 71.4
TPR.G6223 Trifolium pratense HOM05D003359 ORTHO05D004472 8.9e-22 106.3 63 71.4
TWI36G1577 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 8.9e-22 106.3 63 69.8
BcaB07g30230 Brassica carinata HOM05D003359 ORTHO05D004472 1.2e-21 105.9 63 71.4
A02p34540 Brassica napus HOM05D003359 ORTHO05D004472 1.2e-21 105.9 63 71.4
BraA02t08464Z Brassica rapa HOM05D003359 ORTHO05D004472 1.2e-21 105.9 63 71.4
COL.COLO4_23483 Corchorus olitorius HOM05D003359 ORTHO05D004472 1.2e-21 105.9 63 69.8
AT3G26380 Arabidopsis thaliana HOM05D003359 ORTHO05D004472 1.5e-21 105.5 63 71.4
BcaC03g17337 Brassica carinata HOM05D003359 ORTHO05D004472 1.5e-21 105.5 63 71.4
C02p52860 Brassica napus HOM05D003359 ORTHO05D004472 1.5e-21 105.5 63 71.4
BolC2t11365H Brassica oleracea HOM05D003359 ORTHO05D004472 1.5e-21 105.5 63 71.4
Ca_17782_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 1.5e-21 105.5 63 73.0
Gohir.A03G133100 Gossypium hirsutum HOM05D003359 ORTHO05D004472 1.5e-21 105.5 63 69.8
Dinv14737 Davidia involucrata HOM05D003359 ORTHO05D004472 2.0e-21 105.1 63 73.0
Thhalv10003806m.g Eutrema salsugineum HOM05D003359 ORTHO05D004472 2.0e-21 105.1 63 71.4
Glyma.08G131400 Glycine max HOM05D003359 ORTHO05D004472 2.0e-21 105.1 63 71.4
Sabra10G0020500 Salix brachista HOM05D003359 ORTHO05D006537 2.0e-21 105.1 63 73.0
SalBow2G3613 Salvia bowleyana HOM05D003359 ORTHO05D004472 2.0e-21 105.1 63 71.4
Haze_07805 Corylus avellana HOM05D003359 ORTHO05D004472 2.6e-21 104.8 63 73.0
DCAR_029363 Daucus carota HOM05D003359 ORTHO05D004472 2.6e-21 104.8 63 68.3
Medtr2g096530 Medicago truncatula HOM05D003359 ORTHO05D004472 2.6e-21 104.8 63 71.4
CARHR147390 Cardamine hirsuta HOM05D003359 ORTHO05D004472 3.4e-21 104.4 63 68.3
Cpa.g.sc33.46 Carica papaya HOM05D003359 ORTHO05D004472 3.4e-21 104.4 63 66.7
Ca_25137_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 3.4e-21 104.4 63 69.8
Eucgr.H02478 Eucalyptus grandis HOM05D003359 ORTHO05D004472 3.4e-21 104.4 63 71.4
Eucgr.H02479 Eucalyptus grandis HOM05D003359 ORTHO05D004472 3.4e-21 104.4 63 71.4
Oeu057546.1 Olea europaea HOM05D003359 ORTHO05D004472 3.4e-21 104.4 63 66.7
Sp2g15530 Schrenkiella parvula HOM05D003359 ORTHO05D004472 3.4e-21 104.4 63 69.8
Thecc.02G263100 Theobroma cacao HOM05D003359 ORTHO05D004472 3.4e-21 104.4 63 69.8
unitig_22.g6428 Utricularia gibba HOM05D003359 ORTHO05D004472 3.4e-21 104.4 63 66.7
arahy.Tifrunner.gnm1.ann1.6M8RVH Arachis hypogaea HOM05D003359 ORTHO05D004472 4.4e-21 104.0 63 71.4
arahy.Tifrunner.gnm1.ann1.9A08C8 Arachis hypogaea HOM05D003359 ORTHO05D004472 4.4e-21 104.0 63 71.4
AUR62005500 Chenopodium quinoa HOM05D003359 ORTHO05D004472 4.4e-21 104.0 63 69.8
AUR62024240 Chenopodium quinoa HOM05D003359 ORTHO05D004472 4.4e-21 104.0 63 69.8
Duzib251G0748 Durio zibethinus HOM05D003359 ORTHO05D004472 4.4e-21 104.0 63 69.8
Lalb_Chr23g0277621 Lupinus albus HOM05D003359 ORTHO05D004472 4.4e-21 104.0 63 71.4
PSO067G0007 Papaver somniferum HOM05D003359 ORTHO05D004472 4.4e-21 104.0 63 71.4
Phvul.001G255500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 4.4e-21 104.0 63 68.3
Aqoxy5G03710 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 5.7e-21 103.6 63 68.3
Aqoxy5G03712 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 5.7e-21 103.6 63 71.4
arahy.Tifrunner.gnm1.ann1.JIIR6A Arachis hypogaea HOM05D003359 ORTHO05D004472 5.7e-21 103.6 63 68.3
Ciclev10003125m.g Citrus clementina HOM05D003359 ORTHO05D004472 5.7e-21 103.6 63 65.1
TPR.G30530 Trifolium pratense HOM05D003359 ORTHO05D004472 5.7e-21 103.6 63 68.3
Duzib268G0493 Durio zibethinus HOM05D003359 ORTHO05D004472 7.5e-21 103.2 63 69.8
Nitab4.5_0000229g0100 Nicotiana tabacum HOM05D003359 ORTHO05D004472 7.5e-21 103.2 63 66.7
vmacro16179 Vaccinium macrocarpon HOM05D003359 ORTHO05D004472 7.5e-21 103.2 63 69.8
Lj6g0024639 Lotus japonicus HOM05D003359 ORTHO05D004472 9.8e-21 102.8 63 68.3
HanXRQChr08g0208381 Helianthus annuus HOM05D003359 ORTHO05D004472 1.3e-20 102.4 63 68.3
Lsat_1_v5_gn_8_152721 Lactuca sativa HOM05D003359 ORTHO05D004472 1.3e-20 102.4 63 69.8
MBI19_g09304_MAGBIO Magnolia biondii HOM05D003359 ORTHO05D004472 1.3e-20 102.4 63 68.3
Psat5g091760 Pisum sativum HOM05D003359 ORTHO05D004472 1.3e-20 102.4 63 68.3
MSTRG.7949 Avicennia marina HOM05D003359 ORTHO05D004472 1.7e-20 102.1 63 69.8
Medtr3g086580 Medicago truncatula HOM05D003359 ORTHO05D004472 1.7e-20 102.1 63 68.3
SGA_v2.0_scaffold100G29574 Striga asiatica HOM05D003359 ORTHO05D004472 1.7e-20 102.1 63 71.4
VMungo0647G2422 Vigna mungo HOM05D003359 ORTHO05D000417 1.7e-20 102.1 63 66.7
TPR.G15855 Trifolium pratense HOM05D003359 ORTHO05D004472 2.2e-20 101.7 63 68.3
arahy.Tifrunner.gnm1.ann1.5678GR Arachis hypogaea HOM05D003359 ORTHO05D004472 2.9e-20 101.3 63 68.3
PGR119G1467 Punica granatum HOM05D003359 ORTHO05D004472 2.9e-20 101.3 63 69.8
Phvul.002G259200 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 3.7e-20 100.9 63 68.3
Lalb_Chr07g0185431 Lupinus albus HOM05D003359 ORTHO05D004472 6.4e-20 100.1 63 66.7
Lalb_Chr04g0250081 Lupinus albus HOM05D003359 ORTHO05D004472 8.3e-20 99.8 63 61.9
SEGI_05831 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 8.3e-20 99.8 63 68.3
VMungo1383G0093 Vigna mungo HOM05D003359 ORTHO05D004472 8.3e-20 99.8 63 66.7
ATR0824G097 Amborella trichopoda HOM05D003359 ORTHO05D004472 1.1e-19 99.4 63 68.3
Eucgr.H02477 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.1e-19 99.4 63 66.7
Glyma.14G049900 Glycine max HOM05D003359 ORTHO05D004472 1.1e-19 99.4 63 63.5
Psat7g058680 Pisum sativum HOM05D003359 ORTHO05D004472 1.1e-19 99.4 63 63.5
SEGI_30194 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 1.4e-19 99.0 63 63.5
SEGI_37368 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 1.8e-19 98.6 63 61.9
Glyma.02G267700 Glycine max HOM05D003359 ORTHO05D004472 7.0e-19 96.7 63 61.9
Lalb_Chr04g0250101 Lupinus albus HOM05D003359 ORTHO05D004472 7.0e-19 96.7 63 58.7
Eucgr.H02480 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.2e-18 95.9 63 65.1
Phvul.008G214500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 1.2e-18 95.9 63 63.5
Lalb_Chr04g0250051 Lupinus albus HOM05D003359 ORTHO05D004472 1.6e-18 95.5 63 60.3
Lalb_Chr04g0250071 Lupinus albus HOM05D003359 ORTHO05D004472 1.6e-18 95.5 63 60.3
SGA_v2.0_scaffold71G23972 Striga asiatica HOM05D003359 ORTHO05D004472 1.6e-18 95.5 62 64.5
SMO356G0596 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 2.0e-18 95.1 64 65.6
ATR0824G135 Amborella trichopoda HOM05D003359 ORTHO05D019577 5.9e-18 93.6 63 58.7
Os01g0518500 Oryza sativa ssp. japonica HOM05D003359 ORTHO05D004472 1.3e-17 92.4 63 61.9
Pp3c11_18080 Physcomitrium patens HOM05D003359 ORTHO05D004472 1.3e-17 92.4 63 58.7
ATR0824G255 Amborella trichopoda HOM05D003359 ORTHO05D004472 5.0e-17 90.5 63 55.6
Lj4g0008357 Lotus japonicus HOM05D003359 ORTHO05D004472 6.6e-17 90.1 64 60.9
Zm00001eb409230 Zea mays HOM05D003359 ORTHO05D004472 1.1e-16 89.4 63 58.7
LjContig00029g0017310 Lotus japonicus HOM05D003359 ORTHO05D004472 1.5e-16 89.0 63 58.7
Mapoly0033s0125 Marchantia polymorpha HOM05D003359 ORTHO05D004472 2.5e-16 88.2 64 60.9
SMO164G0149 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 3.3e-16 87.8 64 56.2
Sabra08G0140300 Salix brachista HOM05D003359 ORTHO05D006537 5.6e-16 87.0 50 70.0
arahy.Tifrunner.gnm1.ann1.CUSE89 Arachis hypogaea HOM05D003359 ORTHO05D019577 7.3e-16 86.7 63 60.3
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 1.6e-15 85.5 63 55.6
AagrBONN_evm.TU.Sc2ySwM_362.590 Anthoceros agrestis HOM05D003359 ORTHO05D004472 2.1e-15 85.1 64 56.2
RcHm_v2.0_Chr3g0454341 Rosa chinensis HOM05D003359 ORTHO05D004472 2.1e-15 85.1 63 61.9
arahy.Tifrunner.gnm1.ann1.ISLL24 Arachis hypogaea HOM05D003359 ORTHO05D019577 8.0e-15 83.2 63 57.1
HPP92_023372 Vanilla planifolia HOM05D003359 ORTHO05D004472 2.3e-14 81.6 63 52.4
FvH4_6g05560 Fragaria vesca HOM05D003359 ORTHO05D004472 3.1e-14 81.3 63 58.7
FAN14G5485 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.1e-14 81.3 63 58.7
HPP92_023360 Vanilla planifolia HOM05D003359 ORTHO05D004472 4.0e-14 80.9 63 54.0
HPP92_023373 Vanilla planifolia HOM05D003359 ORTHO05D004472 4.0e-14 80.9 63 54.0
FAN05G3491 Fragaria x ananassa HOM05D003359 ORTHO05D004472 5.2e-14 80.5 63 58.7
Mapoly0016s0175 Marchantia polymorpha HOM05D003359 ORTHO05D004472 8.9e-14 79.7 63 50.8
FAN09G1504 Fragaria x ananassa HOM05D003359 ORTHO05D004472 1.5e-13 79.0 63 57.1
Lju551A3T2 Lonicera japonica HOM05D003359 ORTHO05D019577 2.4e-11 71.6 54 64.8
EL10Ac6g13871 Beta vulgaris HOM05D003359 ORTHO05D004472 3.2e-11 71.2 45 66.7
SMO147G0306 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 3.2e-11 71.2 64 42.2
SMO238G0039 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 4.1e-11 70.9 64 48.4
FAN14G4241 Fragaria x ananassa HOM05D003359 ORTHO05D004472 7.0e-11 70.1 81 45.7
VMungo1383G2745 Vigna mungo HOM05D003359 ORTHO05D005153 2.1e-07 58.5 38 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5836 Anthoceros agrestis HOM05D003359 ORTHO05D004472 4.7e-07 57.4 63 41.3
Glyma.02G267600 Glycine max HOM05D003359 ORTHO05D019577 8.1e-07 56.6 35 62.9
QL08p013031 Quercus lobata HOM05D003359 ORTHO05D004472 3.1e-06 54.7 33 69.7


User provided reference genes

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