Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 8.3e-156 553.9 332 100.0
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 2.9e-116 422.5 323 76.2
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.6e-114 416.8 333 73.0
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 4.6e-114 415.2 315 78.4
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.8e-113 413.3 336 74.1
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 2.3e-113 412.9 324 79.0
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 3.0e-113 412.5 324 71.9
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 5.1e-113 411.8 336 74.1
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 6.7e-113 411.4 321 76.9
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 1.9e-112 409.8 290 77.6
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 4.3e-112 408.7 334 75.1
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 9.7e-112 407.5 327 74.0
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 1.3e-111 407.1 331 73.4
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.6e-111 406.8 209 95.2
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.6e-111 406.8 209 95.2
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 1.6e-111 406.8 218 91.7
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 2.8e-111 406.0 209 95.2
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 2.8e-111 406.0 209 95.2
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 2.8e-111 406.0 209 95.7
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 4.8e-111 405.2 209 95.2
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 4.8e-111 405.2 317 77.9
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 4.8e-111 405.2 209 94.3
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 4.8e-111 405.2 209 94.3
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 6.3e-111 404.8 324 75.0
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 6.3e-111 404.8 209 95.2
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 6.3e-111 404.8 241 84.2
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 8.2e-111 404.4 209 94.7
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 8.2e-111 404.4 209 94.7
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 8.2e-111 404.4 209 94.7
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 8.2e-111 404.4 209 94.3
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.4e-110 403.7 209 94.7
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 1.4e-110 403.7 325 75.7
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.8e-110 403.3 334 72.5
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 1.8e-110 403.3 331 71.6
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 1.8e-110 403.3 209 94.3
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 1.8e-110 403.3 333 75.4
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 2.4e-110 402.9 209 94.7
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 2.4e-110 402.9 209 94.3
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 2.4e-110 402.9 209 94.3
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 3.1e-110 402.5 209 94.3
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 3.1e-110 402.5 334 73.1
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 3.1e-110 402.5 209 93.8
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 4.1e-110 402.1 321 73.2
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 4.1e-110 402.1 209 94.3
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 5.3e-110 401.7 318 74.5
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 6.9e-110 401.4 209 94.3
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 6.9e-110 401.4 332 75.6
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.2e-109 400.6 209 92.8
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 1.2e-109 400.6 209 91.9
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.0e-109 399.8 209 92.8
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 2.0e-109 399.8 209 92.8
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 2.6e-109 399.4 209 92.8
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 2.6e-109 399.4 209 93.8
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 3.4e-109 399.1 349 72.5
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 4.5e-109 398.7 209 93.8
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 4.5e-109 398.7 209 93.3
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 5.9e-109 398.3 209 92.3
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 5.9e-109 398.3 209 92.3
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 5.9e-109 398.3 209 92.3
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 5.9e-109 398.3 209 92.3
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 5.9e-109 398.3 209 92.8
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 7.6e-109 397.9 323 73.7
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.0e-108 397.5 209 93.3
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.3e-108 397.1 343 70.8
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 2.2e-108 396.4 209 92.8
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 2.2e-108 396.4 209 91.9
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 2.9e-108 396.0 209 92.3
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.9e-108 396.0 218 90.8
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 3.8e-108 395.6 209 92.3
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 3.8e-108 395.6 209 91.9
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 5.0e-108 395.2 209 91.9
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 5.0e-108 395.2 209 91.9
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 5.0e-108 395.2 209 92.8
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 6.5e-108 394.8 221 89.6
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 6.5e-108 394.8 209 90.4
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 6.5e-108 394.8 209 91.4
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 1.9e-107 393.3 330 73.3
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 2.5e-107 392.9 209 91.9
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 4.2e-107 392.1 215 88.8
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 9.3e-107 391.0 218 89.9
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 2.1e-106 389.8 215 88.4
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 2.1e-106 389.8 215 88.4
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 3.6e-106 389.0 209 90.9
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 4.6e-106 388.7 219 85.8
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 4.6e-106 388.7 219 85.8
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 6.1e-106 388.3 219 85.8
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 6.1e-106 388.3 219 85.8
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 6.7e-105 384.8 209 90.4
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 6.7e-105 384.8 212 91.0
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 6.7e-105 384.8 212 91.0
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 1.1e-104 384.0 209 88.5
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.9e-104 383.3 209 90.0
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 3.3e-104 382.5 209 90.0
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 7.4e-104 381.3 208 92.3
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 9.7e-104 380.9 209 89.0
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 1.3e-103 380.6 229 84.7
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 1.3e-103 380.6 393 62.6
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 4.1e-102 375.6 209 85.6
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 4.1e-102 375.6 215 87.0
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 5.3e-102 375.2 395 59.0
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 2.0e-101 373.2 209 87.1
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 3.8e-100 369.0 207 87.0
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 1.4e-99 367.1 209 84.2
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 2.8e-95 352.8 210 82.9
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 2.2e-92 343.2 211 80.6
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 8.0e-90 334.7 181 91.7
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 2.0e-88 330.1 339 56.0
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 1.2e-85 320.9 286 72.0
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 2.6e-85 319.7 211 74.4
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 3.2e-83 312.8 209 74.2
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 2.0e-80 303.5 213 74.2
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 3.6e-74 282.7 243 64.6
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 1.8e-73 280.4 216 64.4
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.7e-71 273.9 189 72.0
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 3.7e-71 272.7 145 91.7
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.8e-70 270.4 206 71.4
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 4.2e-67 259.2 538 35.5
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 2.1e-66 256.9 153 85.0
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 8.0e-66 255.0 209 64.6
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 2.8e-63 246.5 132 91.7
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 5.4e-62 242.3 128 92.2
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 7.0e-54 215.3 148 74.3
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.2e-53 214.5 107 98.1
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.6e-53 212.6 218 54.6
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 4.6e-53 212.6 107 98.1
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.0e-52 209.9 108 95.4
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 3.1e-49 199.9 139 71.9
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 5.2e-49 199.1 107 90.7
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.3e-47 194.5 106 91.5
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.9e-47 193.4 118 78.8
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 1.2e-45 188.0 222 59.0
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 4.6e-45 186.0 102 87.3
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 2.3e-44 183.7 92 95.7
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 3.6e-42 176.4 95 91.6
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 3.1e-41 173.3 95 90.5
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 3.0e-36 156.8 99 76.8
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 1.9e-35 154.1 105 74.3
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.2e-34 149.1 202 57.4
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 1.4e-33 147.9 76 90.8
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 1.2e-32 144.8 71 95.8
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 1.2e-32 144.8 71 95.8
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 3.4e-32 143.3 80 87.5
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 2.2e-31 140.6 76 86.8
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 7.1e-22 109.0 184 53.3
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 4.6e-21 106.3 58 87.9
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.1e-19 101.7 119 56.3
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.6e-18 97.8 58 79.3
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 3.3e-11 73.6 103 48.5
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 4.8e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.1e-10 68.9 38 86.8
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 4.9e-07 59.7 45 64.4


User provided reference genes

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