Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 1.3e-249 865.9 427 100.0
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.2e-183 646.7 427 77.5
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.2e-183 646.7 440 76.1
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 4.6e-183 644.8 431 74.7
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 7.9e-183 644.0 426 76.5
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 3.9e-182 641.7 421 76.7
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 6.7e-182 641.0 433 74.4
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 9.6e-181 637.1 424 75.0
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 8.2e-180 634.0 429 74.8
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.4e-179 632.5 429 73.7
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 7.6e-178 627.5 419 74.9
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 7.6e-178 627.5 388 78.4
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 8.4e-177 624.0 425 75.5
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 1.1e-176 623.6 440 72.7
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.1e-176 623.6 418 75.1
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 1.1e-176 623.6 379 81.0
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.4e-176 623.2 432 74.3
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 1.9e-176 622.9 455 71.0
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 2.5e-176 622.5 445 72.8
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 3.2e-176 622.1 403 75.9
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 4.2e-176 621.7 427 74.0
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 5.5e-176 621.3 436 72.5
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 5.5e-176 621.3 436 72.5
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 9.3e-176 620.5 455 70.3
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 3.5e-175 618.6 434 73.7
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 3.5e-175 618.6 427 73.1
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 3.5e-175 618.6 394 76.6
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 4.6e-175 618.2 429 75.1
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 4.6e-175 618.2 383 79.1
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.0e-174 617.1 431 73.1
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 1.0e-174 617.1 383 79.1
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 1.3e-174 616.7 416 74.8
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.3e-174 616.7 431 71.9
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 2.3e-174 615.9 424 73.3
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 3.0e-174 615.5 378 78.8
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 3.0e-174 615.5 428 73.1
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 6.7e-174 614.4 395 77.7
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 8.7e-174 614.0 413 75.1
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 3.3e-173 612.1 377 78.2
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 4.3e-173 611.7 378 78.6
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 7.4e-173 610.9 377 79.8
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 9.7e-173 610.5 434 72.1
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 9.7e-173 610.5 427 72.1
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.3e-172 610.1 378 78.3
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.3e-172 610.1 378 78.3
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.3e-172 610.1 378 78.3
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 1.6e-172 609.8 382 79.3
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.6e-172 609.8 378 78.3
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 4.8e-172 608.2 439 72.0
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 8.2e-172 607.4 376 77.9
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 8.2e-172 607.4 440 72.0
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 4.1e-171 605.1 378 77.5
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 4.1e-171 605.1 393 76.6
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 5.3e-171 604.7 376 78.2
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 5.3e-171 604.7 426 72.3
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.2e-170 603.6 453 70.2
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 3.4e-170 602.1 480 67.1
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 2.2e-169 599.4 385 78.4
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 2.2e-169 599.4 406 75.1
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 6.5e-169 597.8 446 69.5
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 4.2e-168 595.1 379 76.8
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 7.2e-168 594.3 400 73.5
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.6e-167 593.2 374 77.5
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.6e-167 591.7 428 72.7
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 3.9e-166 588.6 420 72.1
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 3.9e-166 588.6 439 70.4
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.9e-165 586.3 427 70.7
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.5e-165 585.9 420 72.1
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 3.3e-165 585.5 442 70.1
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 5.7e-165 584.7 389 75.1
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 7.4e-165 584.3 430 68.6
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.7e-164 583.2 389 74.0
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 2.8e-164 582.4 443 69.1
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 2.8e-164 582.4 434 70.5
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 3.7e-164 582.0 431 69.8
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 5.3e-163 578.2 378 75.9
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 5.3e-163 578.2 395 73.4
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 3.4e-162 575.5 410 70.2
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 7.7e-162 574.3 422 69.7
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.3e-161 573.5 436 68.3
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 3.8e-161 572.0 388 72.2
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 5.0e-161 571.6 388 74.0
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.9e-160 569.7 386 73.3
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 1.9e-160 569.7 410 70.7
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 4.2e-160 568.5 430 68.4
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 5.5e-160 568.2 415 70.8
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 7.2e-160 567.8 402 72.6
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 9.4e-160 567.4 378 74.3
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.6e-159 566.6 368 76.6
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 2.7e-159 565.8 405 74.1
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.0e-158 563.9 378 73.8
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 2.3e-158 562.8 501 59.7
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 2.2e-156 556.2 374 71.7
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.7e-156 555.4 374 73.3
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 6.3e-156 554.7 411 72.5
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 6.3e-156 554.7 447 66.2
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 8.2e-156 554.3 430 66.3
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 8.2e-156 554.3 353 77.1
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.0e-153 545.0 348 75.9
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.0e-153 545.0 348 75.9
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.1e-152 543.9 390 69.7
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.9e-152 543.1 550 55.8
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 5.7e-149 531.6 582 53.1
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 3.1e-147 525.8 380 67.1
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.8e-142 510.0 412 63.3
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 4.8e-140 501.9 380 66.8
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 3.5e-138 495.7 491 55.8
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.1e-135 486.5 427 62.5
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.6e-122 443.7 432 58.6
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.7e-116 423.7 354 62.4
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.2e-114 417.5 352 59.7
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 5.2e-110 402.1 230 84.8
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 6.8e-110 401.7 382 52.1
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 2.7e-106 389.8 203 91.6
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.2e-103 380.9 396 51.8
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 9.3e-75 285.0 319 46.7
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 1.3e-57 228.0 117 92.3
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.5e-56 223.8 333 37.8
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 3.1e-54 216.9 143 74.1
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.4e-49 201.4 181 61.9
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 3.0e-41 173.7 111 75.7
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 2.2e-39 167.5 211 49.3
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 1.4e-30 138.3 101 65.3
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 4.5e-29 133.3 69 87.0
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.5e-27 126.3 69 91.3
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.6e-24 117.5 84 66.7
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 2.8e-23 114.0 82 65.9
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 3.5e-21 107.1 80 66.2
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.2e-18 98.6 53 81.1
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 3.5e-13 80.5 43 83.7
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 7.7e-13 79.3 62 64.5
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 5.5e-11 73.2 70 60.0
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 3.6e-10 70.5 43 76.7
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.5e-08 65.1 60 53.3
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 2.0e-08 64.7 39 74.4
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.3e-07 62.0 38 68.4


User provided reference genes

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