Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 0.0e+00 1089.3 538 100.0
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 2.0e-263 912.1 527 83.9
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 6.3e-262 907.1 539 83.9
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 2.0e-260 902.1 558 79.9
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 8.5e-259 896.7 531 82.3
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 3.2e-258 894.8 538 82.5
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 5.5e-258 894.0 531 82.1
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 1.7e-243 845.9 538 79.4
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 3.8e-243 844.7 488 84.6
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 2.5e-242 842.0 514 80.5
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 5.8e-223 777.7 462 82.9
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 9.8e-223 776.9 540 70.6
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 8.6e-219 763.8 543 68.9
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 1.1e-218 763.5 539 70.1
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 2.5e-218 762.3 545 70.5
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 3.6e-217 758.4 557 68.6
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 1.4e-216 756.5 538 70.3
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 5.2e-216 754.6 538 68.8
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 5.2e-216 754.6 542 69.7
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.5e-215 753.1 538 69.3
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 2.0e-215 752.7 541 70.4
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 5.8e-215 751.1 546 67.8
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 2.2e-214 749.2 546 67.4
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 2.9e-214 748.8 539 68.8
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 8.3e-214 747.3 539 67.3
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 1.9e-213 746.1 544 68.0
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 4.1e-213 745.0 548 68.8
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 9.2e-213 743.8 541 69.3
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.3e-211 740.0 539 69.2
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 3.9e-211 738.4 550 68.2
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 1.9e-210 736.1 540 69.4
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 1.6e-209 733.0 538 69.0
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 4.7e-209 731.5 543 68.3
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 4.7e-209 731.5 545 69.0
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 1.8e-208 729.6 543 67.2
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 3.1e-208 728.8 540 68.7
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 3.1e-208 728.8 569 65.0
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 6.8e-208 727.6 543 67.4
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 8.9e-208 727.2 548 67.9
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 1.2e-207 726.9 548 66.6
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 1.3e-206 723.4 540 66.7
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 2.9e-206 722.2 545 67.2
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 3.7e-206 721.8 542 67.7
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 4.9e-206 721.5 540 68.1
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 6.4e-206 721.1 538 67.3
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 6.4e-206 721.1 511 70.6
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 3.2e-205 718.8 543 66.9
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 4.1e-205 718.4 543 65.6
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 2.1e-204 716.1 549 65.6
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 7.8e-204 714.1 548 65.7
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 2.3e-203 712.6 541 67.5
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 2.3e-203 712.6 554 65.3
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.9e-203 711.8 549 66.8
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 1.1e-202 710.3 543 67.0
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 5.6e-202 708.0 557 64.3
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 7.3e-202 707.6 524 67.2
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 1.2e-201 706.8 565 64.1
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 2.1e-201 706.1 541 67.3
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.1e-201 706.1 544 66.4
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 3.6e-201 705.3 549 64.5
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 8.1e-201 704.1 532 66.7
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 8.1e-201 704.1 545 65.7
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 3.1e-200 702.2 521 67.0
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 4.0e-200 701.8 542 66.8
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 4.0e-200 701.8 542 66.8
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 5.2e-200 701.4 565 64.6
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 5.2e-200 701.4 545 66.1
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 6.8e-200 701.0 538 65.4
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 1.5e-199 699.9 542 67.0
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.7e-198 696.4 638 58.5
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 6.4e-198 694.5 555 63.2
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 1.4e-197 693.3 587 62.0
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.4e-197 693.3 564 63.1
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 1.9e-197 693.0 596 61.1
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 1.9e-197 693.0 541 65.8
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 3.2e-197 692.2 553 63.5
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 2.1e-196 689.5 545 64.8
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 7.8e-196 687.6 539 64.6
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.8e-192 676.4 567 62.1
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 5.8e-191 671.4 541 63.0
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 8.4e-190 667.5 543 63.9
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 2.4e-189 666.0 525 63.0
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 2.3e-187 659.4 538 62.1
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 6.6e-187 657.9 562 61.6
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 1.6e-185 653.3 578 59.7
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.5e-183 646.7 477 67.7
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 3.5e-180 635.6 507 63.5
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 5.6e-178 628.2 461 69.6
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 7.4e-178 627.9 480 67.3
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 6.2e-177 624.8 539 60.3
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 8.4e-174 614.4 563 54.7
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.3e-171 606.3 567 57.0
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 3.0e-171 605.9 390 76.2
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.0e-168 594.3 540 60.2
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.5e-167 593.6 556 57.2
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.6e-159 566.2 537 55.7
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 1.4e-155 553.9 423 65.2
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 8.8e-155 551.2 554 54.2
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 1.1e-152 544.3 439 63.8
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.9e-149 533.5 538 51.1
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 1.5e-143 513.8 548 48.4
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 6.7e-139 498.4 271 84.1
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 9.1e-136 488.0 275 82.5
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 3.1e-128 463.0 460 52.8
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 1.2e-124 451.1 531 49.9
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 2.2e-121 440.3 378 60.3
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.0e-118 431.4 342 59.9
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.7e-110 404.1 518 45.0
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 2.1e-108 397.1 320 57.5
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 2.3e-102 377.1 363 56.7
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.9e-101 374.0 217 78.3
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.7e-94 350.9 392 51.0
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.8e-92 343.6 270 63.0
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 6.2e-92 342.4 402 48.5
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 6.8e-91 339.0 186 84.4
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 9.9e-90 335.1 186 83.9
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.1e-85 321.6 540 36.7
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 5.6e-85 319.3 265 64.5
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 6.8e-83 312.4 501 37.5
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.4e-81 305.8 292 57.9
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.2e-79 301.6 490 36.5
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.8e-75 287.7 208 66.3
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 9.6e-69 265.4 314 43.3
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 4.9e-65 253.1 269 54.6
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 4.2e-64 250.0 271 50.6
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 4.6e-63 246.5 314 41.1
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 8.7e-62 242.3 140 77.9
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.0e-58 231.1 283 51.2
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 2.2e-57 227.6 119 88.2
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.2e-42 178.7 251 45.4
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.5e-42 178.3 360 33.3
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 8.5e-41 172.6 93 87.1
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 2.0e-37 161.4 584 26.2
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 6.9e-35 152.9 124 59.7
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 7.7e-34 149.4 453 24.1
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 3.2e-32 144.1 82 79.3
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 1.6e-26 125.2 101 63.4
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 4.4e-21 107.1 62 77.4
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 1.5e-16 92.0 204 31.4
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 4.7e-15 87.0 55 72.7
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.2e-13 82.4 60 61.7
PRCOL_00003580 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 1.9e-08 65.1 168 27.4
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 2.7e-07 61.2 45 62.2
FvH4_6g44671 Fragaria vesca HOM05D005206 ORTHO05D006219 8.8e-06 56.2 35 77.1


User provided reference genes

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