Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 1.5e-109 399.4 194 100.0
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 3.7e-103 378.3 194 93.3
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 1.4e-102 376.3 194 93.3
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 9.0e-102 373.6 194 92.3
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 4.5e-101 371.3 194 90.7
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 1.0e-100 370.2 194 89.2
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 2.2e-100 369.0 193 91.2
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 3.8e-100 368.2 194 89.2
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 6.5e-100 367.5 194 88.1
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 6.5e-100 367.5 194 90.7
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 1.9e-99 365.9 194 89.2
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 3.2e-99 365.2 194 90.7
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 4.2e-99 364.8 194 90.2
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 5.5e-99 364.4 194 88.7
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 9.3e-99 363.6 194 89.7
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.2e-98 363.2 194 89.7
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 1.2e-98 363.2 194 90.7
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 1.3e-97 359.8 194 88.7
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 2.3e-97 359.0 194 86.6
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 3.0e-97 358.6 194 88.1
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 6.7e-97 357.5 194 87.6
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 8.7e-97 357.1 194 87.6
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 8.7e-97 357.1 194 87.6
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 8.7e-97 357.1 194 87.6
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 8.7e-97 357.1 194 87.6
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.1e-96 356.7 194 88.1
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.5e-96 356.3 194 87.6
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.5e-96 356.3 194 88.1
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.5e-96 355.5 194 86.6
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 7.4e-96 354.0 194 86.1
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 9.7e-96 353.6 194 87.1
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 1.3e-95 353.2 194 86.1
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.3e-95 353.2 194 86.6
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 1.6e-95 352.8 187 88.8
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 4.8e-95 351.3 194 85.6
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 4.8e-95 351.3 194 85.1
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 84.5
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 85.6
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 86.6
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 85.6
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 85.1
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 86.1
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 84.5
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 85.6
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 5.3e-94 347.8 194 85.6
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 9.0e-94 347.1 225 76.4
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 2.0e-93 345.9 194 86.1
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 2.6e-93 345.5 194 85.6
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 3.4e-93 345.1 194 83.5
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 83.5
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.9e-92 342.0 194 83.5
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 5.0e-92 341.3 200 81.5
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 81.4
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 1.9e-91 339.3 195 83.6
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 82.5
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 83.0
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 83.0
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 3.2e-91 338.6 194 81.4
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 3.2e-91 338.6 214 77.6
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 3.2e-91 338.6 194 82.0
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 82.0
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 5.5e-91 337.8 194 81.4
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 81.4
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 81.4
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 81.4
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.6e-90 336.3 194 82.5
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 2.7e-90 335.5 194 80.9
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 2.7e-90 335.5 194 80.9
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 81.4
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 4.6e-90 334.7 188 83.5
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 80.4
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 80.4
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 7.9e-90 334.0 194 80.9
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.0e-89 333.6 194 80.4
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.0e-89 333.6 214 76.6
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.0e-89 333.6 214 76.6
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 80.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 79.9
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 3.9e-89 331.6 235 71.5
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 5.1e-89 331.3 194 78.9
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 3.3e-88 328.6 194 77.8
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 79.9
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 79.4
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 4.8e-87 324.7 210 73.8
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 6.3e-87 324.3 178 84.3
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 1.4e-86 323.2 187 80.2
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 4.5e-85 318.2 210 75.7
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 1.7e-84 316.2 194 79.4
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 2.2e-84 315.8 193 78.2
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 5.0e-84 314.7 173 85.0
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 2.5e-83 312.4 194 75.8
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 4.2e-83 311.6 194 78.4
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 4.7e-82 308.1 297 56.6
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.8e-81 306.2 177 81.4
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.9e-81 305.1 194 76.3
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 2.6e-80 302.4 194 71.1
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.6e-80 302.4 194 71.1
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.3e-80 302.0 194 71.6
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 4.8e-79 298.1 161 88.2
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 6.3e-79 297.7 274 59.1
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 5.3e-78 294.7 195 68.7
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 5.3e-78 294.7 194 70.6
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 6.5e-76 287.7 283 55.8
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 8.5e-76 287.3 162 83.3
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 6.1e-74 281.2 160 82.5
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 4.1e-70 268.5 172 70.3
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 6.5e-60 234.6 120 90.0
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 5.5e-59 231.5 120 90.8
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 2.3e-57 226.1 120 87.5
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.7e-55 219.9 134 76.9
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 3.5e-53 212.2 178 56.7
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 5.0e-52 208.4 130 75.4
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.1e-51 207.2 123 78.0
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 6.1e-50 201.4 123 74.8
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 6.8e-49 198.0 114 83.3
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 8.9e-49 197.6 191 49.7
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.0e-45 186.4 114 76.3
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.0e-44 184.1 112 75.9
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 3.6e-42 175.6 93 87.1
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 1.8e-41 173.3 122 68.9
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 3.7e-39 165.6 99 76.8
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 4.1e-38 162.2 173 49.1
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 8.6e-36 154.5 92 80.4
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.2e-34 150.6 186 41.4
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 7.5e-32 141.4 88 77.3
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 7.5e-32 141.4 88 77.3
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 1.3e-31 140.6 76 81.6
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 6.4e-31 138.3 73 84.9
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 6.4e-31 138.3 73 84.9
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 6.4e-31 138.3 73 84.9
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 1.1e-30 137.5 73 82.2
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 7.1e-30 134.8 71 84.5
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 4.7e-26 122.1 64 84.4
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 6.0e-21 105.1 74 70.3
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.6e-20 101.7 59 81.4
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 7.1e-14 81.6 83 51.8
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 7.1e-14 81.6 83 51.8
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 9.3e-14 81.3 56 73.2
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.6e-13 79.0 88 52.3
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 1.1e-11 74.3 40 85.0
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 7.3e-11 71.6 93 44.1
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 8.1e-10 68.2 56 58.9


User provided reference genes

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