Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 0.0e+00 3215.2 1622 100.0
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 0.0e+00 2133.6 1594 70.5
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 0.0e+00 2090.5 1689 66.2
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 0.0e+00 2087.0 1624 68.2
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 0.0e+00 2077.4 1595 68.5
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 0.0e+00 2068.5 1718 64.3
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 0.0e+00 1976.8 1568 66.6
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 0.0e+00 1402.9 1464 54.7
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 0.0e+00 1217.6 1670 45.1
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 0.0e+00 1197.6 1654 45.0
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 0.0e+00 1184.5 1434 49.7
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 0.0e+00 1171.4 1429 49.5
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 0.0e+00 1165.6 1501 47.0
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 0.0e+00 1117.4 1661 43.3
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 0.0e+00 1083.9 1663 42.2
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.2e-301 1039.3 1770 39.4
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 2.3e-299 1033.1 1717 40.1
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.8e-294 1015.8 1689 40.6
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 5.9e-287 991.9 1592 40.5
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 7.6e-287 991.5 1412 42.4
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 4.2e-285 985.7 1693 39.1
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 1.1e-282 977.6 1695 40.1
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 4.1e-280 969.1 1666 40.2
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 3.8e-278 962.6 1715 39.5
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 5.0e-278 962.2 1590 40.9
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 7.9e-276 954.9 1689 39.7
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 3.9e-275 952.6 1686 39.6
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 3.7e-265 919.5 1661 38.8
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 4.8e-249 865.9 1705 37.4
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 3.4e-242 843.2 1694 37.4
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 1.2e-239 834.7 1703 35.8
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 1.8e-235 820.8 1684 36.0
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 7.5e-234 815.5 1686 35.4
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 3.2e-232 810.1 1685 35.8
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 7.0e-232 808.9 1697 35.4
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 3.0e-230 803.5 1177 43.6
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 1.6e-228 797.7 1658 35.8
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 4.0e-227 793.1 1690 36.2
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.2e-226 791.6 1176 43.3
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 2.2e-225 787.3 1676 34.5
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 2.9e-225 786.9 1685 35.7
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 2.9e-225 786.9 1669 34.3
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 4.9e-225 786.2 1682 35.3
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.1e-224 785.0 1680 35.3
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 4.1e-224 783.1 1647 36.7
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.6e-223 781.2 1615 35.5
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 2.0e-223 780.8 1653 36.5
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 7.8e-223 778.9 1690 34.6
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.3e-222 777.3 1705 34.4
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 4.7e-220 769.6 1677 35.9
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 4.7e-220 769.6 1679 35.6
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 5.2e-219 766.1 1676 35.7
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 5.8e-218 762.7 1691 34.8
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 2.4e-216 757.3 1676 34.6
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 1.6e-215 754.6 1667 34.9
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 7.8e-215 752.3 1494 35.3
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 1.7e-214 751.1 1732 34.8
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 1.1e-213 748.4 1741 34.4
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 3.3e-213 746.9 1662 34.6
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 3.6e-212 743.4 1500 35.1
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.9e-209 733.8 1658 34.8
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 3.2e-208 730.3 1697 34.8
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.5e-205 721.5 1654 34.9
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 4.3e-205 719.9 1650 35.3
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 7.3e-205 719.2 1636 34.2
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 9.6e-205 718.8 1675 34.5
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 6.2e-204 716.1 1514 34.9
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 5.2e-203 713.0 1744 33.4
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.0e-198 698.7 1736 32.4
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.4e-194 683.7 1641 32.8
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 2.2e-193 681.0 1728 32.8
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 7.1e-192 676.0 1706 32.9
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 4.6e-191 673.3 1666 33.7
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 1.0e-182 645.6 784 49.7
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 1.8e-179 634.8 1643 32.4
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 9.3e-176 622.5 733 50.8
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 2.1e-167 594.7 819 44.2
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 8.5e-161 572.8 1131 35.6
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 5.1e-158 563.5 453 64.9
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 7.2e-152 543.1 1652 30.7
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.4e-150 538.9 1252 34.5
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 1.1e-147 529.3 1688 29.0
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 1.4e-147 528.9 1688 28.8
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 2.4e-139 501.5 1651 27.8
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 5.9e-138 496.9 1662 27.1
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 1.1e-136 492.7 858 37.9
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 2.0e-133 481.9 1638 28.3
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 3.8e-129 467.6 1633 28.6
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 8.0e-127 459.9 1572 29.2
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 4.0e-126 457.6 1545 29.1
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 1.3e-124 452.6 1345 29.4
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 6.3e-124 450.3 700 40.0
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 1.3e-121 442.6 1780 26.5
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.8e-121 441.0 983 35.2
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 1.5e-120 439.1 666 42.0
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 1.6e-114 419.1 765 38.4
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 3.9e-113 414.5 1654 26.9
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 5.8e-109 400.6 682 38.7
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 2.2e-108 398.7 738 38.9
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 2.3e-102 378.6 734 34.6
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 1.7e-92 345.9 791 32.9
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 2.4e-86 325.5 718 34.1
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.1e-81 307.8 502 40.6
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 1.9e-59 236.1 594 33.8
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 1.1e-56 226.9 504 36.3
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.1e-51 210.3 592 31.8
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 9.7e-48 197.2 566 27.7
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.0e-40 172.9 155 58.1
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 4.4e-40 171.8 233 39.1
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 5.2e-33 148.3 230 37.0
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 2.8e-31 142.5 214 40.2
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 1.3e-28 133.7 265 30.6
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 3.2e-27 129.0 164 39.6
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 4.4e-24 118.6 305 35.7
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 2.8e-23 115.9 519 23.9
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 7.0e-22 111.3 303 31.4
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 9.4e-19 100.9 243 33.3
Lalb_Chr19g0130841 Lupinus albus HOM05D005579 ORTHO05D006775 4.0e-17 95.5 92 56.5
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 4.4e-16 92.0 214 32.2
Medtr6g045353 Medicago truncatula HOM05D005579 ORTHO05D006775 7.5e-16 91.3 99 54.5
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 9.8e-16 90.9 215 34.9
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 8.3e-15 87.8 165 41.2
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 9.1e-14 84.3 206 37.4
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.7e-13 82.8 192 33.9
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 5.0e-12 78.6 98 49.0
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.0e-12 78.6 95 51.6
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.5e-11 76.3 98 51.0
arahy.Tifrunner.gnm1.ann1.G92CPV Arachis hypogaea HOM05D005579 ORTHO05D006775 1.6e-10 73.6 159 40.9
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 3.6e-10 72.4 144 30.6
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 1.0e-09 70.9 137 32.8
Lalb_Chr19g0130851 Lupinus albus HOM05D005579 ORTHO05D006775 4.4e-08 65.5 54 61.1


User provided reference genes

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