Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 8.1e-153 543.9 310 100.0
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.5e-119 433.3 320 80.9
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 7.9e-116 421.0 321 80.1
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 1.3e-115 420.2 323 79.3
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 6.7e-115 417.9 327 78.0
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 3.3e-114 415.6 335 75.5
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 3.3e-114 415.6 326 78.5
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.8e-112 409.8 326 77.3
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.8e-112 409.8 332 75.9
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 7.6e-111 404.4 328 75.9
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 1.7e-110 403.3 329 76.6
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 3.8e-110 402.1 359 69.6
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 4.9e-110 401.7 322 78.3
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 1.4e-109 400.2 325 75.7
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.4e-109 400.2 329 75.7
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 1.9e-109 399.8 327 75.2
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 4.2e-109 398.7 330 76.4
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 1.6e-108 396.7 324 75.6
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 7.9e-108 394.4 321 76.3
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 3.0e-107 392.5 322 74.8
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.1e-107 391.7 330 70.9
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 8.7e-107 391.0 327 74.3
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 1.1e-106 390.6 321 74.5
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.5e-106 389.4 332 73.2
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 4.3e-106 388.7 327 73.4
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 5.7e-106 388.3 323 75.5
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 9.7e-106 387.5 327 71.3
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 9.7e-106 387.5 325 72.9
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.6e-105 386.7 327 72.8
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.2e-105 386.3 322 71.4
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 2.8e-105 386.0 323 74.9
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 2.8e-105 386.0 321 73.2
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 6.3e-105 384.8 324 74.1
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 1.4e-104 383.6 334 71.3
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.8e-104 383.3 324 74.4
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 2.4e-104 382.9 322 72.7
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 2.4e-104 382.9 322 72.7
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 2.4e-104 382.9 322 70.8
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 2.4e-104 382.9 327 72.2
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 9.0e-104 380.9 326 72.4
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.4e-103 379.0 330 70.3
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 3.4e-103 379.0 336 69.6
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 4.5e-103 378.6 322 73.0
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 4.5e-103 378.6 318 72.3
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 1.3e-102 377.1 324 70.4
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.7e-102 376.7 330 71.8
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.7e-102 376.7 318 72.3
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.7e-102 376.7 326 71.8
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 2.2e-102 376.3 329 71.1
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 2.2e-102 376.3 329 69.6
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 3.8e-102 375.6 326 70.6
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 3.8e-102 375.6 322 72.0
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 5.0e-102 375.2 323 71.2
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 5.0e-102 375.2 330 72.7
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 6.5e-102 374.8 326 71.5
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 8.5e-102 374.4 330 72.1
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 8.5e-102 374.4 321 71.3
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.1e-101 374.0 327 70.0
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 1.1e-101 374.0 312 71.2
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.1e-101 374.0 283 77.0
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.4e-101 373.6 326 71.5
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.4e-101 373.6 322 71.1
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 1.9e-101 373.2 322 71.4
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 1.9e-101 373.2 322 71.4
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 1.9e-101 373.2 342 69.9
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 2.5e-101 372.9 330 70.6
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.2e-101 372.5 326 70.9
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 3.2e-101 372.5 328 68.9
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 4.2e-101 372.1 325 69.5
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 4.2e-101 372.1 322 69.9
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 5.5e-101 371.7 314 71.0
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 5.5e-101 371.7 323 70.9
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 7.2e-101 371.3 322 70.2
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 9.3e-101 370.9 323 72.1
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 9.3e-101 370.9 326 69.9
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 9.3e-101 370.9 326 69.6
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 1.2e-100 370.5 326 69.9
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.2e-100 370.5 329 69.3
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.6e-100 370.2 322 69.9
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.6e-100 370.2 336 69.3
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.6e-100 370.2 324 71.0
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.6e-100 370.2 325 71.1
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.7e-100 369.4 328 70.4
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 3.6e-100 369.0 314 71.7
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 3.6e-100 369.0 327 70.9
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 4.6e-100 368.6 322 69.6
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.6e-100 368.6 327 70.9
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 4.6e-100 368.6 328 68.6
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.6e-100 368.6 332 69.0
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 6.1e-100 368.2 334 68.0
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 1.0e-99 367.5 324 70.4
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 1.0e-99 367.5 336 68.5
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.0e-99 367.5 329 69.9
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 1.3e-99 367.1 317 70.3
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.3e-99 367.1 321 72.0
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.8e-99 366.7 334 69.2
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.8e-99 366.7 331 68.9
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.3e-99 366.3 321 72.0
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 6.7e-99 364.8 328 68.6
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 8.7e-99 364.4 319 70.2
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.1e-98 364.0 315 70.8
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 1.1e-98 364.0 327 69.1
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 2.5e-98 362.8 330 69.1
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.5e-98 362.8 277 75.1
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 2.5e-98 362.8 356 65.4
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 5.7e-98 361.7 279 76.0
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 7.4e-98 361.3 324 69.4
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 9.7e-98 360.9 320 69.4
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 9.7e-98 360.9 320 69.4
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.3e-97 360.5 328 67.4
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 2.2e-97 359.8 330 67.3
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.8e-97 359.4 315 70.2
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 2.8e-97 359.4 322 70.2
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 2.8e-97 359.4 328 68.3
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.8e-97 358.6 318 69.5
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.8e-96 356.7 330 66.1
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-96 356.7 320 68.8
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.8e-96 356.7 320 68.8
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.8e-96 356.7 322 68.6
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.4e-96 356.3 239 85.8
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 2.4e-96 356.3 320 68.8
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 2.4e-96 356.3 328 67.4
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 4.1e-96 355.5 325 67.7
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 5.3e-96 355.1 328 67.4
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 1.5e-95 353.6 303 70.0
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 2.0e-95 353.2 307 70.4
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 5.5e-93 345.1 300 72.0
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 2.1e-92 343.2 261 77.8
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 6.1e-92 341.7 295 70.8
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.4e-91 340.5 235 71.9
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.4e-91 340.5 298 69.8
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 8.8e-91 337.8 231 83.5
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 8.8e-91 337.8 305 68.2
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.1e-90 337.4 231 83.5
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.5e-90 337.0 309 67.6
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 7.4e-90 334.7 312 66.0
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 9.7e-90 334.3 307 59.6
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 2.2e-89 333.2 253 72.7
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 2.8e-89 332.8 335 66.6
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.4e-88 329.7 277 70.4
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 3.1e-88 329.3 297 69.4
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 5.3e-88 328.6 310 63.9
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 6.5e-86 321.6 234 77.4
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.8e-83 313.5 320 55.0
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.7e-81 305.8 206 86.4
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 8.2e-81 304.7 297 69.7
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 2.1e-76 290.0 192 89.1
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 3.6e-76 289.3 237 68.4
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 8.0e-76 288.1 325 60.9
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 8.0e-76 288.1 325 60.9
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 3.0e-75 286.2 295 56.3
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.4e-74 282.3 276 58.3
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 3.7e-73 279.3 360 56.1
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.4e-72 277.3 256 73.4
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 7.0e-72 275.0 234 65.8
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.7e-70 270.4 239 56.9
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 4.2e-69 265.8 242 54.1
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 2.3e-62 243.4 207 73.4
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.9e-61 240.4 237 73.0
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 2.3e-59 233.4 243 68.7
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 6.3e-57 225.3 149 72.5
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 7.0e-56 221.9 149 77.9
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.2e-52 211.1 236 51.7
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 2.3e-51 206.8 295 40.0
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.6e-50 203.4 125 76.8
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.9e-46 189.5 124 72.6
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 1.5e-37 161.0 192 64.1
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.0e-34 150.6 165 65.5
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.3e-30 137.1 108 73.1
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.9e-30 136.3 135 60.7
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 7.6e-26 122.1 100 66.0
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.8e-25 119.8 240 38.8
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 3.2e-24 116.7 138 53.6
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 2.3e-22 110.5 65 83.1
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 3.2e-16 90.1 159 52.2
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 3.2e-16 90.1 107 62.6
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 9.3e-16 88.6 90 57.8
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.7e-15 87.0 83 75.9
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 2.7e-15 87.0 122 45.9
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 5.1e-14 82.8 153 49.7
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.1e-11 75.1 93 44.1
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 6.7e-06 55.8 36 77.8


User provided reference genes

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