Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 0.0e+00 1402.5 706 100.0
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 2.4e-309 1065.1 730 74.9
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 3.4e-300 1034.6 742 72.4
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.7e-299 1032.3 742 72.2
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 2.1e-297 1025.4 736 72.4
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 2.4e-293 1011.9 732 71.2
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.6e-289 999.2 707 73.1
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 6.7e-288 993.8 734 69.6
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 3.8e-283 978.0 730 69.5
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 1.6e-281 972.6 740 68.4
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 4.7e-281 971.1 737 67.3
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 5.1e-280 967.6 732 67.9
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 7.4e-279 963.8 738 67.8
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 4.8e-278 961.1 746 68.8
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 6.3e-278 960.7 734 67.8
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 1.8e-277 959.1 711 70.5
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 3.1e-277 958.4 733 68.1
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 4.1e-277 958.0 734 67.3
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 1.5e-276 956.1 725 68.4
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 1.5e-276 956.1 725 68.4
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 4.5e-276 954.5 735 67.3
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 2.9e-275 951.8 734 67.2
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 1.1e-274 949.9 726 66.0
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.1e-274 949.9 721 68.9
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 4.2e-274 948.0 701 70.0
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 7.2e-274 947.2 724 68.4
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 9.4e-274 946.8 736 65.8
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.0e-272 943.3 718 68.5
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 1.4e-272 943.0 728 65.9
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 3.9e-272 941.4 713 69.0
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 5.2e-272 941.0 740 65.7
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 6.7e-272 940.6 765 65.6
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 1.1e-271 939.9 754 65.8
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 2.6e-271 938.7 737 65.0
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 4.4e-271 937.9 736 66.0
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 7.4e-271 937.2 728 65.5
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 7.4e-271 937.2 728 65.5
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 9.7e-271 936.8 729 65.8
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.3e-270 936.4 745 65.2
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 8.2e-270 933.7 724 66.7
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.0e-267 926.8 732 66.4
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 6.5e-267 924.1 733 65.8
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 9.4e-266 920.2 770 63.0
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 8.8e-264 913.7 718 66.0
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.2e-262 909.1 743 64.6
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.2e-262 909.1 743 65.0
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 6.3e-262 907.5 722 65.4
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 2.4e-261 905.6 720 65.4
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 5.9e-260 901.0 743 63.0
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 5.9e-260 901.0 734 63.8
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.0e-259 900.2 725 64.4
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.7e-259 899.4 741 63.6
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 2.9e-259 898.7 707 65.8
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 5.0e-259 897.9 725 65.0
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.9e-258 896.0 793 60.7
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 4.0e-256 888.3 705 66.0
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 3.4e-255 885.2 734 63.4
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 1.8e-253 879.4 724 62.8
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 4.5e-252 874.8 752 62.1
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 4.5e-252 874.8 728 63.5
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 4.5e-252 874.8 708 63.4
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 5.9e-252 874.4 734 63.1
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 3.6e-249 865.1 709 63.6
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 2.3e-248 862.4 699 63.9
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 8.9e-248 860.5 703 63.6
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.0e-247 859.4 699 63.7
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 7.5e-247 857.4 699 63.5
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 2.8e-246 855.5 708 63.4
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 8.3e-246 854.0 710 63.0
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 4.1e-245 851.7 706 62.2
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 1.6e-244 849.7 720 62.8
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 7.3e-242 840.9 968 49.9
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.6e-241 838.6 695 62.7
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 4.4e-239 831.6 749 59.8
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.7e-238 829.7 706 62.0
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 4.9e-238 828.2 711 60.8
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 2.7e-236 822.4 704 61.2
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 6.0e-236 821.2 736 62.2
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 1.5e-234 816.6 703 60.9
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 1.5e-234 816.6 704 60.9
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 3.6e-233 812.0 684 63.3
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.1e-232 810.4 701 59.9
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 1.4e-232 810.1 703 60.6
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.8e-232 809.7 701 59.8
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 3.1e-232 808.9 696 61.2
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 6.6e-227 791.2 630 66.3
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 6.6e-227 791.2 745 56.2
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.1e-226 790.4 949 48.8
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 1.1e-224 783.9 702 58.0
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 2.6e-223 779.2 851 51.2
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 5.4e-221 771.5 640 62.7
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 3.3e-218 762.3 728 55.9
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 9.6e-218 760.8 607 65.2
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 2.2e-214 749.6 706 56.8
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 1.2e-204 717.2 743 53.0
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 3.6e-201 705.7 496 73.2
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 3.1e-192 676.0 590 62.4
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.5e-181 638.6 588 60.7
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 1.8e-179 633.6 689 49.5
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 3.4e-175 619.4 541 62.1
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 1.2e-164 584.3 749 45.0
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 4.1e-160 569.3 733 47.3
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 7.0e-160 568.5 776 42.9
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 2.2e-142 510.4 387 65.1
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 1.8e-131 474.2 393 60.8
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.2e-112 410.2 643 40.7
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.9e-109 401.0 696 38.8
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 5.8e-106 389.4 451 46.8
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.1e-104 383.3 442 48.9
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.5e-103 380.2 461 46.6
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.1e-96 358.6 329 60.2
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 5.3e-91 339.7 310 58.4
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.4e-89 332.8 294 62.9
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.7e-81 308.1 295 58.0
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 1.2e-79 302.0 1007 27.5
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 2.1e-71 274.6 229 65.5
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 5.1e-70 270.0 277 57.8
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 1.4e-67 261.9 170 71.8
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 2.5e-64 251.1 160 75.6
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 1.6e-60 238.4 358 41.3
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.9e-55 219.5 273 42.1
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 4.3e-53 213.8 697 27.8
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 1.9e-48 198.4 163 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.6e-47 194.1 167 55.7
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 3.9e-46 190.7 124 71.8
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 6.1e-31 140.2 172 52.3
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.5e-29 135.6 164 46.3
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.8e-28 131.3 278 39.2
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.9e-25 121.3 104 59.6
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 8.0e-23 113.2 125 53.6
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 2.8e-20 104.8 189 33.9
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.7e-20 104.4 103 52.4
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 5.6e-16 90.5 64 73.4
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 4.1e-11 74.3 109 33.9
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 2.0e-10 72.0 183 31.1
Actinidia11567 Actinidia chinensis HOM05D005074 ORTHO05D006853 3.5e-10 71.2 75 53.3
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 1.9e-08 65.5 158 27.8
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 3.3e-08 64.7 162 26.5
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 5.6e-08 63.9 49 57.1


User provided reference genes

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