Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1471.4 743 100.0
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1339.3 742 89.8
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1337.4 742 89.6
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1329.7 738 89.2
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1328.5 743 88.6
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1328.5 743 88.6
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1328.2 743 88.4
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1327.4 743 89.0
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1320.4 743 87.3
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 743 88.0
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1318.5 743 88.2
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1318.1 743 88.4
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1316.6 742 87.5
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1315.1 743 87.6
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1314.7 743 87.6
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 737 88.7
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1312.4 743 86.9
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1311.6 743 87.5
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1311.2 743 87.1
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1310.8 743 87.9
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1310.8 743 87.1
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1310.8 742 86.8
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1310.0 743 87.9
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1309.7 743 87.6
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1309.7 743 87.1
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1309.3 743 87.5
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1309.3 743 86.7
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 742 87.2
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 746 88.1
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1308.5 740 87.4
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 743 87.2
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1307.0 743 86.7
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1306.6 740 87.3
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1305.4 739 87.7
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1305.4 745 87.2
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 744 86.8
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 743 87.6
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 743 87.9
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 742 87.5
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 742 87.5
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 743 86.7
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 749 86.2
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 743 86.4
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 742 87.2
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1299.3 743 87.2
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1299.3 744 86.6
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1297.7 742 86.5
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1297.3 743 86.0
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1297.3 743 85.9
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 743 85.9
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 745 86.8
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 743 86.0
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 744 86.4
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1295.8 742 86.9
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1295.4 742 86.3
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1295.0 744 85.9
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1295.0 743 86.0
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 744 85.9
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1293.5 743 85.6
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1292.7 744 85.6
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1291.6 743 85.9
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1291.6 743 87.9
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1289.2 743 86.7
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 742 85.8
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 743 85.7
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1286.9 743 85.9
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1286.9 738 85.9
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1286.9 738 86.7
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1284.2 770 83.4
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1281.9 744 86.0
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 743 86.1
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1279.6 744 84.7
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1279.2 765 84.4
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1279.2 765 84.4
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1277.7 747 84.9
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1277.3 738 85.0
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1276.2 742 85.2
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1274.6 742 84.6
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1274.6 738 85.0
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1274.2 738 84.6
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1273.8 745 85.1
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1271.9 738 85.0
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1271.9 742 85.2
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1270.8 709 88.9
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1269.6 743 85.3
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1268.8 742 84.9
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1268.4 738 85.0
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1268.1 742 84.8
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1267.7 738 84.4
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1267.3 738 84.3
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1266.9 709 88.9
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1265.4 742 84.8
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1265.4 738 84.3
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1263.8 738 85.8
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1262.7 738 84.0
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1261.5 824 78.9
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1260.4 738 83.7
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 738 83.7
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1259.2 738 84.7
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1257.3 739 84.6
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1256.9 746 84.0
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1249.6 805 79.0
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1247.6 713 86.7
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1242.6 738 83.2
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1242.6 743 83.0
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1239.9 722 85.3
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1239.6 712 86.8
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1239.2 758 82.2
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1237.6 748 82.2
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1235.3 738 82.8
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1229.9 746 82.3
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1221.8 738 84.8
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1221.5 747 81.5
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1216.8 737 81.8
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1216.1 774 79.1
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1204.1 669 89.2
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1188.7 750 81.1
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1178.7 748 78.9
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1169.5 675 85.5
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1121.3 683 80.2
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1118.2 739 75.8
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1115.1 744 74.3
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1109.7 613 88.7
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1104.0 632 86.1
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1103.6 740 73.8
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.9e-310 1068.1 686 75.5
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 3.7e-297 1024.6 633 80.4
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 2.0e-242 842.8 667 63.0
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.7e-228 796.6 691 59.0
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 7.7e-226 787.7 538 76.8
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 7.2e-216 754.6 644 61.6
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.5e-205 720.3 523 72.8
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 8.3e-204 714.5 743 54.8
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 5.4e-203 711.8 738 54.7
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 9.1e-203 711.1 466 77.7
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 5.5e-200 701.8 453 78.6
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 2.4e-134 483.8 263 90.1
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 1.0e-132 478.4 432 62.3
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 5.0e-100 369.8 220 83.6
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 6.8e-81 306.2 578 36.5
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 2.1e-74 284.6 151 90.1
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 1.2e-72 278.9 143 93.7
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.2e-58 232.3 170 72.4
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 1.7e-39 168.7 294 37.4
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 2.9e-39 167.9 84 94.0
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.1e-35 156.0 80 92.5
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.2e-32 146.0 98 71.4
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 6.7e-28 130.2 72 86.1
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 4.5e-24 117.5 71 76.1
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.9e-22 112.1 80 67.5
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 3.5e-21 107.8 69 72.5
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 6.7e-20 103.6 108 53.7
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 2.1e-18 98.6 77 66.2
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 6.2e-18 97.1 73 67.1
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.8e-17 95.5 222 33.8
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.1e-17 94.7 75 64.0
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 4.0e-17 94.4 85 55.3
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.6e-16 91.7 75 61.3
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 3.4e-16 91.3 85 54.1
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 7.6e-16 90.1 71 59.2
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 1.4e-14 85.9 47 89.4
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 2.5e-14 85.1 49 91.8
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 6.0e-13 80.5 61 63.9
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 8.2e-10 70.1 40 82.5
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 4.1e-09 67.8 43 69.8
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 3.4e-08 64.7 33 90.9
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 2.2e-07 62.0 145 30.3
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 1.4e-06 59.3 58 56.9
ATR0561G078 Amborella trichopoda HOM05D004298 ORTHO05D065354 1.9e-06 58.9 73 45.2
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.2e-06 58.2 47 57.4
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 9.4e-06 56.6 46 56.5


User provided reference genes

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